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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053225 ID=TCONS_00053225|Name=TCONS_00053225|organism=Clytia hemisphaerica|type=transcript|length=2204bp
AAACATCCCAGCTGCAAACAAAGTTTCAATAGCTGCCTTCACACCTCAAT
TCGTGAATGCAGGAAATGCTGGAAAATTGTCTACATTGTTTACAACTGCT
GGACAATTCTTGGATCATGACATGACGGTATCAAACCATGGCAAATGTAA
TATCAAAGActgTAGCTCAAATTCCGCCTTCAAGTATCCATGCTTCCCAA
TCAAGTTTGACGATGGAACATCAAAATGTACGCCTTTCGTCCGTGCATTT
GCTGCATGCCAATCAGCATCTCCAAGCAGAAGAAGACAAAGACAACAAGT
GAACACTATAACAGCATTTGTTGATGGATCGCAAATCTATGGACATAATG
CGCGTTTGGCACGATCATTGCGTAAGCTTGATGGTAGTGGTCAATTAAGA
ACCAGAAGAGGTGATCTTATACCTCTGAAGAGGTTAACAACTCCATGTGA
TCTTCTAGTGGGTTGTTCCCTGGCTGGTGATATCAGAGCTGACGAAAACA
TTGCTCTACACTCAATGCATACCGTTTGGGTACGCGAGCACAACAGAGTA
GCTTCCCAACTAAGATTATTTAACTACCATTGGAGAGAAGAGAAGCTATA
CCAGGAAGCTAGAAAGATTGTTATCGCTGAATGGCAACATGTTGTTTTCA
ATGAATGGGTACCTCGAATTGTTGATCTTGGAAGATATAGAAGATATAAC
TCGAAATTGAACCCCAGCATTATTAATGCATTTGCAACAGCTGCTTTCAG
ATTCGGTCACAGTCTAGCACCAAACGCATGGAGTCAACTTGACAATAATT
TTGATATGAAGTTTGAAAAGATCAGTCTTCGAGAATCTTTCTTTAACATT
CAAAGCATCAATCAGAGAGGAATTGAACCAACCATGTTTGGTCTTGTTGG
AAATCAATCAAACACAGTCGACGATGTGTTCGCTTTTGGATTGCTCCGGA
AATTATTTGTCCCACCTGGTGAAGAAGGCCATATGGATTTGACAGCATTC
AACATCCAAAGAGGTCGTGACCATGGATTGCCAACGTACGGAAAATGGAG
ACAGTTTTGCAAGCTGCCAGCCATCTCGTCATTCAGGGAGCTTGAATATC
ACATGCCCGCAAGAGTTGCTAAGAAGTTCTCAATATTGTTCAATAGTCCA
GCAGATATTGATCTCTTTGCAGCTGGAATTTCAGAGAATCACGTACCAGG
ATTCCAAACAGGTCCAACATTCAAATGTTTGTTTTGGCATCAATTCAGTC
GATTGAGAGATGGTGATCGATATTATTACCTCAATCCTGGTGTTTTCACT
GCAGAGCAGCAATCAGAATTGAAGAAAACATCAATGTCGAAAGTTTTGTG
CAACAACTTGAAAGGAATCGTGTCGATCAACAAAGATGCTTTTGTTCAGA
CAAAAGAAAAACGCACTCCATGTAATGATATCCCTGGGCCAAATCTTAAT
GTGTTTTAACAACATATAATGGAAcatcaattcaattttttttttcaatt
taattctTAATTTGTATTTTAAACTACCAAAGTAAGTAACACCAAGACGA
TTCATAAGTCTTATAGGCAAAAGGCGTGTTCTTAACAAAAGAGGGTCTGC
TACACAGATCTataaagctcgaagggctagatgtcgtgctttaagccatc
acaggccaaaaaaagtgaatagCGCAAGAAATAtagttgctattgttttc
aaaaatccgAGAAGCTTCTAATTGGTCAAACGCTGAAATTGTATATTATt
ctcacgtgacttaggtaggatttcctacctagatacgacacacttttcag
cacgacatctagcccttcggactttataaatctatggtctgCTAGTTTCT
AGATCTGCTATATACAGAACCGAGATAATTTAGTAGAACGATCATGGTTT
TTCAAATAAATTAGTTGAAACtaatattttcaagatttttgtaCTGAAAA
TTGACGTCATCTTAAGACGACCCAAAAAGGGTTTAAATCTTTTCGATTCA
ACTGCGGGTTTATTAGCTGTTCTTGAACCCATAAGAAACCTCTCTGTTAT
ATTTCAGCTACGTATGATTTATGTTAAGGTTAGGGTCTTCTTTGAGCTAA
TTGTCTATCAGACAATTCTTGTATATCAATCGATCTAAAATTCGATACTG
ATTATTTTTAAGATATGAAactgtttttatttaatttactTAACTCGACA
ATAT Run BLAST on NCBI transcript from alignment at scaffold_227:365652..382271+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053225 ID=TCONS_00053225|Name=TCONS_00053225|organism=Clytia hemisphaerica|type=transcript|length=16620bp|location=Sequence derived from alignment at scaffold_227:365652..382271+ (Clytia hemisphaerica)
AAACATCCCAGCTGCAAACAAAGTTTCAATAGCTGCCTTCACACCTCAAT
TCGTGAATGCAGGAAATGCTGGAAAATTGTCTACATTGTTTACAACTGCT
GGACAATTCTTGGATCATGACATGACGGTATCAAACCATGGCAAATGTAA
TATCAAAGAGTAAGCTAATTAgacaaatatttgaaatgtctTAAAATTAA
GAAGTGAAGAAAAGCATATCTCAACAAGAACAACTGCGCTTAATAACATT
ATCAAGAATCTGTTTATCAGCAGACAACATATGAAAGTCAATAAATCACA
AGGCTTATTTTATATGGTAGAATTTACTACTTTTCCCTAAGCTcttcgaa
aaaaacttttgccgACAGTGTGTCTTTTATTAGCGATTTTATGtagaggg
ggtttatctaaagaatcctgcattactaaaaacaGGCAAAACGagcgaca
aatttcataaaaaacgacatatttcgccgtctACAACCCCGatcgaaagt
gactgtaccacgcCTATCGATTCATTCCCCTTCGTTTATCAGGGGAaata
actacatgtggtttaaaaagaacgacaaattacacttgcgtgttacaatg
caggattctttagaggaacagattggtatttgcacttttgaggaagTTTT
AACCCACAAAATCGAgaacggtaaaagtgctgattcaCCATTGTCCTTAG
CTGGTCAGGATTTACTCAaatagaaccttaccgtctttGTCGCAGAAAAA
GTTTTCTAATTGTTTGGCAGTTACATTTTTCCCTTTCAAATCTTAGCTGT
AGTTGTTTATGTGTagtatattatttttatttttcaaattttagctgTAG
CTCAAATTCCGCCTTCAAGTATCCATGCTTCCCAATCAAGTTTGACGATG
GAACATCAAAATGTACGCCTTTCGTCCGTGCATTTGCTGCATGCCAATCA
GCATCTCCAAGCAGAAGAAGACAAAGACAACAAGTGAACACTATAACAGC
ATTTGTTGATGGATCGCAAATCTATGGACATAATGCGCGTTTGGCACGAT
CATTGCGTAAGCTTGATGGTAAGTGGATGTACCTACCTTATTCATAACTT
CGatccttttttttttacaacCACGTCTCACAGCACTGGGCAGGCTAATG
ACATCCACAAGTggactaaagtctattcacgataagtgtgcactcttttt
tcttttacctataacttttgaaggaattcttcaatctttataaatttggt
attatcggaaagatattagtgagtggaacaatttaaaataaaaaatcttc
aaaaaaattctaaaaatgaagatgaaaatgaagaagaaaaaatgaagatc
ttgtagaaaagtgctttaactttcattttcactggagagattttttgatc
ttagggaatcatcactgtgaaaaaatttcattaaaatatttattcaatat
aaagttatgatacaaagttaataagtgattgaccccaaaaaacagcaaaa
aactgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNcatttttttcttcttcattctcatcttcatttttagaattttttta
aatatttttttatttcaaattattccactcactaatatcattccgatgat
accaaatttataaggattaaagaattccttcaaaaattataggtaaatga
aaaaagagtgcacacttatcgtgaatagactttagatctCTTTATCAATA
TATTATTGGCATTTTTGTAGAGGTTTTTGATTCAGGCTAAGGACTGGATG
GATctaaatagaccttatcggagtttttttcctaaaaaagcgatgcattg
tgggattgttttacTCGCTGAAAGAATTCAGCAAAGAGATCTTTCCCCTA
TGAGAAGAGCACCCTGAAAATTTATCTGCATTAAGAACTACGCTGAACTC
TCATCCTTACTGGGAAAGATGCTTATAAGTTTGTATCCACATCTCCATTG
GCATTTAAATTCCTACTAGGTAGGAAAATCTAAGTAGATTGCTTAAATGG
ATTGGGGTGTTTCTTTAAATATCTTCAAGGCTATccatttaaaatgtaaa
aacttATTATCTTGCAGGTAGTGGTCAATTAAGAACCAGAAGAGGTGATC
TTATACCTCTGAAGAGGTTAACAACTCCATGTGATCTTCTAGTGGGTTGT
TCCCTGGCTGGTGATATCAGAGCTGACGAAAACATTGCTCTACACTCAAT
GCATACCGTTTGGGTACGCGAGCACAACAGAGTAGCTTCCCAACTAAGAT
TATTTAACTACCATTGGAGAGAAGAGAAGCTATACCAGGAAGCTAGAAAG
ATTGTTATCGCTGAATGGCAACATGTTGTTTTCAATGAATGGGTACCTCG
AATTGTTGATCTTGGAAGATATAGAAGATATAACTCGAAATTGAACCCCA
GCATTATTAATGCATTTGCAACAGCTGCTTTCAGATTCGGTCACAGTCTA
GCACCAAACGCATGGAGTCAACTTGACAATAATTTTGATATGAAGTTTGA
AAAGATCAGTCTTCGAGAATCTTTCTTTAACATTCAAAGCATCAATCAGA
GAGGAATTGAACCAACCATGTTTGGTCTTGTTGGAAATCAATCAAACACA
GTCGACGATGTGTTCGCTTTTGGATTGCTCCGGAAATTATTTGTCCCACC
TGGTGAAGAAGGCCATATGGATTTGACAGCATTCAACATCCAAAGGGGTC
GTGACCATGGATTGCCAACATACGGACGCTGGAGAAGATACTGCAGACTA
CCGGCCATCACAAATTTCCGTCAACTGGCCAGAGTGATGCCAAGAGAAGT
TGCCCAAAAGTTCTCAACCCTGTATAAGAAGCCAGCAGATATTGATCTCT
TTGCGGCTGGCATTTCAGAGCACCATGTGCGAGGCTTCCAAACAGGTCCC
ACCTTCCAATGTCTGTTTCGTCGGCAATTCGAACGCCTGAGGGATGGTGA
TCGTTATTATTATCTCAACCGTGGAGTTTTTACACCAAAACAACGGAATG
AATTGAAGAAGACCTCAATGGCGAAAATCCTGTGTGACAACTTGAAAGGA
ATAGTCTCAATCAACAAAGATGCTTTCATCCAGACTTCAAAGAAACGCAC
GCCTTGTAACAATATCCGTGGACCAGATCTTAGTGTTTTCTGAACTGATA
TCTCCATCATTTAGAAGCTGTACTATTTTAATAAATTGCAATGTCAACCT
TTTTTTTCAGTTCATCTTTGAgggaaatatattttaaaaattctttatcG
CTTGTACATTTCTTGTTCATTTACTATAGGATTTTAAGCATCCGCCGTGC
GTTTAGTTGAGGCCTCTACCCCTTGAAAGAAATAACTTTTTGCAATCCGT
TATTGTTTCTTCAATAATCTATATATGGTTGACATtgaaactaaaaataa
attccttattttaatATATTACCCCCTATCTTTTATTCACTTTAATACTT
TGAGCTCCGATTTTGCATTTAAGTCCCTTTCAGCATAATTTAAAAGAGTT
AGAGGCCTTATATTCTTACATAGAAATCGTGTATTAGCATTTATGAGCTT
CTCGCTCGAAATTTACAATTCCTTATCTTTGGACTGGAATGTGTCACTTT
GACCaatcaatttcatcattttaACAATAAGCGAACGTTTTGGTAAGCtg
ccaaaaatttcaattcgAATGACCTAATTTTCATAATAGAAACCAGTATT
GAAAAACAAAGCGAAGTGAAGCGAGAAGATTGGTCTcgacatgaacatat
aaacgactggacgtctatcttttattgtctctttgaagcgagcttcgttg
ccgcctgtatttcaaaattggtatgaaaaatccgacaatattccgtcata
attttatttctttgaattatttaggtaaaaggaatgatagagcttgaaca
ttactcctaatgcacaaaaaaattattttcgaattttttcacaagtttgc
aatatattttatctacattttcaactctaaaatgcagaatttcaactgcg
tgtatacttttgaatcccttttgtcaccccaataattttttttatgactt
gaaaaaaatagcttgtcaaagttgagagcctgtttcataagaatatcgaa
attagaatgtgacactctctaaaattattagacactttcaagtcaaaatt
tagaaatattagtcggagttttgacaagctgacgatgattttgcctctgt
tatctttgttatgatatagataaacgacttgagaagagtagaacaacaga
gagacttttgtcgaagttctgagttgttagcaaggtattcccaagtggta
tatcatcaaaatcttttgtttcattttatgcttttaacgaggcggcaacg
aagctagcagccttttctacaaaacgacaaaggagatggatgtccagtcg
tttatatgttcatggtcaTACCAGAATATAGCCAATAAGCTTGATAAATT
TGAAtagattttttttgtaaaaacgtCTGTTNTCGATCAACCCGCTATGT
CTTGTACTTTTACATTATATAATCTACAACCACTATTCTTTTATcgagct
aatttcaaaattgatttcgaGCAAATGCTTTAAATTAAGATAAAAAATAT
CTTGCGTGCTAAAGTCCAATTAAAAACGACAATTTTAGGCAGTTAATTAA
GGAACAATTGACAATAAACAAGCTGCAAGTTAATTGGACTAGCGTTATCT
AACATTTCGTAAAAAAGGATCGATTGTAAAGATATTTCCTTGTCACAGGC
CCAGTTGTTCCCGTTTCCCATCGGCTAGAAAAATTATATGAATTCTCATC
CTTATTGGAAACTACATCGTTTAATCCCCACTTtctaagggagtggtcag
atcTACTAGGGGGAGTgaagtatatttaaaaaattccaaaaaagttTAAT
TGGACTAGTGCAGTAACAGTTGTAACAGTTATCTGACATTTCgtaaaaaa
gaatcaaaattgtAAAGATACTTCCATGTCACAGGCCCAGTCGTTCCCGT
TTCCCACCAGCTTGAAGAATATTCCGAATCGTCATCCTTATATCGGATGA
CAACTTAGCGGATGAGTAGCTGAGATTGGGTGATCtaatctaggcggtaa
gttactgggagctgagggTAAGTGcagcgctccacctcagcattcgaacT
ACACTAAACCTGCAAATAGAAAAAGGAATAGattccctcactcccggctt
cgccgacagccaccagatgaatgaatatacttactacttacttacTTGGA
GATGAACATAATAAACTATGAATAAAACTCCCACATTCGCTACAACAGCT
TTGCAATGTATCATGGACTGAAAATGACAAACATTCCTAAGTAACAAACT
TTTTTGACAGCCTGAGATGTTTCACCAGTTTTACCGGCTAAACCATACAT
AACCATAGGCTAGAAGATCCATgtaagctgtttcaccagtttcacggatt
ctcaagtaTATATCAATAGCCAAAAGAGCTCTTCGTCTCTTATagtagcc
ataactttcattaaggtgccatcacagcaaaacgaacacatagaattgaa
tttgcgttcaaaaggaatgatcttagccctaaagtaatttttgttaagag
tgacctctcatctgaaacaaaattctttcaaatgctagcAAATGTGTCAa
tggagtgatttacagtctacttagagtgacatccgtgccttgtcttacac
gttttttataagaacaatttcataagaatacgaggctNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAA
ACACACACAAtccatcaaaaaaatatttcaaatagtaTGTTTTGAAACCA
AGTGTTTTCTCCGTTCTCTCTTTTTTCCTTTAATCCTAGGAAGCGTTTCT
CTTTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacacgtt
ttttataagaacaatttcataagaatacgaggctgaaatttggccaaaac
ctaagaacaaattaagaagaatctgaacatcagatttcagaaattactga
taagtacatgtttccattttaattaatattgacatttaaggctgaaaagc
tcatataaatttaagagcagcccaaccagaatcatatgacttaaTGGTTT
TTCCAATGAAAAGCGTATATAtatgaagatactgctcttcattatgtttt
tttactaatgtacggcatacaggaaaactgggagccgggaggcgggaggc
tgaaccgggagccgggagtcgggaggctgaaatcgaaagtgggaggcggg
aggcgggagTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
AACTGCTGATGCaagatttaattacaaaaaaatataacatgatAGTTTTC
GAGTGTTATATATATTTAGTGCAATCGGCTCTTGCATGttggaaataatc
taaaataatttctttaagaagtcaataccttgacagggtaaaatTATACA
AGTCGTGGCAAAATAAAGGTCTCATGATAATCATTGTTCACTACTTTTAC
ACATCATCTGTGCGGCCGAGTGGATAAGTCGATGAACCGGCAACTAAAGG
GTAATGATATTAgagagttcgaatcctatacggtgcgacgaaaattgtgt
tattttgtctgttttgtcaacattgatcaaactttttctgcttttatatc
ttgttgatatttttgaaaatttccgttaaaattttaagaaataaaaattg
ggggggggggcagtcaggcaaattgaacGACGCCGCGACGGGTATCTGCG
GCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTAt
cttataaacacttttttcagaaccacaagtgaaaagaaaagcaaaactga
ctgaatatgctgccaaaaaagtgattgacaggtctagAAAATGATTGCCA
CAGGGTTAGATATTTcgttatatttatcaaaaagtaatatACTTGTGGAA
AGCCCAATTATTCTACTTTTTCGAATGCTGTgtcatggaatttttttaac
aattaaatAGAACGGAGTTTCCTCTGATGTAAACAAACCTCGAGTCCTAT
CCTGAAAATTNACCTCGAGTCCTCTCTTGAAAATTGACATTGGgcgtaga
aaaaaagacaaatgaaagtattttcctttttaattcatATTTCCAATAAT
TAAAGACTAACTTGAAAACACCAAGAGTGAAATGTAGCTAAATGCTTAGA
ACACCTTgcgacttagaattttttttcaaaactgaaaatttgaccccggc
tcgaactaCCAAATTCTCTTGTCATTGATTCTGAGTCCGGCACGCTAGCA
ATGTACTATCTAGCCGatacaaaattttgcaatttaaaaatcattataaa
aaacactactaCATATACGGGTGAACTGACCTCATGGGCTAGGCTAACTG
TTTAGATCAATTACATACTCCAGGCTCCGTAAGGTTCCttattataattg
aaaaagCGTATACTAACAAACGATACGTAACTCGTGAGAGTGCTTTTTAA
ACCGTTGTCTTTGTTTATCTTCACaagattttgtttatctttgcaaCTTA
GTTCTCGCTTTCGGCCTTTCGTCTATTCGTTTTCAGCCTATCAccttcga
tttcagcctcccgactcccacctcccgcctcccagctttcgttttcagcc
tcccgcctcccactttcgttttcagcctcccgcctctcactttcaatttc
agcccCCCGCCTCCTACTTTCTATTTCAGCTTctcgcctcccactttcgt
tttcagcctcccgcctcccgcctcccactttcgatttcagcctcccgact
cccggctcccggttcagcctcccgcctcccggctcCCAGTTCTCCTGCCT
ATTCCCCTCCCATTTCACGGGTTGACGCAGATgaaggtatattcacttgc
caagaGAATCGTAGAGACACGGTGGGTATCAAATTCGAGCCTCCCAGTGT
AAACCAGTGTAAAATAATCACTGCAAATATTTCAATCCAGAAAAGTAAGG
TCCTTAAATTCACATATTTCTTACCAGTTGAGTTAAAAAGAAACACTTTA
ATTAACTAGAACTTATGAGAAGCACCTTCACAGCAATGAGTCCATAGCAA
CAACTTTGATTGAGAAAACTTCTTTAATAAGGTGGCTCCTATctaaacac
ccctttctcatagacccactgggaacccttctcAATGGAAAAATGTGGCA
AATTATACTCTAATCTTTTCCCCACTGATAATTCCATCCCCACTAAATTT
TCTAGCTAGAAAACAATAGCATTCAAGTCCCCAGCAATAAAAAACATGGA
ATATCAATCTCTATAGAAAATCCAGAAAACTCGTTGattaaccctattca
aactaggcttttaggggcggttcagaactagggggggggggcttttcctg
taccaccccttaacttttgatctagtgggtctttttggatgaaatttggc
acacaagatccttgtcatgtaatgtaacttttgacaaaaattctttttga
tgacgtcactcatcatgcccaaagtgagcaaaaaccgaaattttccattg
ttcttataaatagctattgtattctaacaaaggctttagaaaattgtggc
ctgagtttaaaatgcttattttatcctaaatattcaataaattacggttt
aaacgatatatttgacattaaaaataaatttgtattggaaaagtgtcaat
gtttgtgacaccttactgtcagtaatgtcatcatgctcaaggtgtgaaaa
tatttaggtgtcaaatatttttttattttgaagcaaaataaaagttggga
atttacagaaaatttcacggcaaaagctctattatttcaggagctattgc
caatagtttgacttccgaacagaaagagccccccctagtccgaatagggt
taaaggttATTCCTTTCAGAGTGTAGGTAAGAATCATGCGTTTCTAAAAA
GTGACAATACCGGCCATTAAACTGAACCCTGATCCCTTCAGGTCCCTGGA
AAATACTCGTTTCAAGGGCCTGTTCTTACACCATTCTTCTCAGCAACCGT
TTGTTGAACagagtcaaatttttgaaaaagtgttAATTGATAACCAATGA
TAACCAatgtgttttgaatttttttacaccaATCGAAGCATTTCTTGTTG
ATCAATACAGCTTTAAAGGTAAAATTTCCGATAAAAActgataaatttga
taaaatcgaaTGAATAAATCCAAGTACCAAAAGGAATAATTCTGATTATT
TGATGAAAACGAACGGCTTTATTACTTTCAGTGATAACTAAAAATTTCGT
GTCAAAAAGCCTTTCCGTTCTTCAAAAATTTAgtgtaaaagtttgaaaag
tgctgtttgaaggaattcttaaaTGCTATGAAGTCAGACATTCACAGCTT
TTTTCGATGAGATTTCTAAAAGCCCAACATTTCAGTACAATCAAAATGTC
TTCAAAGTCACAATGGTCACTAACGATGAGCCAAGGTCTATCCTtactaa
gaccatgttcagacgtttctTTGCGATAGAGCAAGGAGATTCCCTTTGGA
CACTCCAGAAAAGCCTGTAGAAAGTGAGACATGGGTATGTGGAATATGTA
CAAAAAATGtgtttgaattttcatttatttcgaaaaaaattgctAGCATA
GACTCTTGAAAATCTAATTAGAGAAGGGCAACTATATAAAAAAAGCCTGG
GAGGTACTAGgacaaaatgggttacggggatgcgccgctggtccttttta
acctccacaagtcccaggtagggtcgcaaaaacacgaaaatagaaaaaat
cagtccctcgtagggtgcctttttttggaaaatttggggaaaaaagtaga
aaatttgagaaaattttagaatttcagtccacttttttcgcaaatttcgg
caaacattttgaaaaaaccagtcccacgtagggtccatttttcaaccCTC
AACGGAGCACCCctgtcggtcgacaagggtagctCCCCCACTCCCGGGAA
AAAAAGGGTTGAACAGATTGATTTCCATTGGCCAAGAACCCTATGTGCAT
TTCTATTTTCAGAATGATCCTTTTTCTTGAGTTTAACCAGTTTACTTATT
AAAATTTAAGTCCTCGGTAGTACATGCaaacaaacattcgaatcaATTAA
CAAATAAATGCTTAGTTAACATTGAAATTAAGCTTGATTgctaaagataa
aaattaaaaaaatttacagtcATTTGAGCGTGACAAAGCAAGTCTAACTA
ATTGAGCAAAAACTTGTCAgggcatttttgattttaatcgATTATAAGAT
CTGCAGCTTCATTGCTTCTTTACTTATCGATTGATTAAGATGAagattta
acaaaaattactttcagtTTCCTTTGCATCTACGTTAAGATAAAAGTCTA
CGTTAAGACCTAGGTCCCTCCCTTTAATCAGTATAAATATAGCTGAATCT
GTAATAACAAAATCAATTCAAAGTTTCCAAGTGAAGCGGTAAGATTCTGA
AGTTGACAAATGGTTGCCATGATGGAGAAGATATTATTGGTTTTATTTGT
CgttttccggttcgcaaagtcTTTCGACGCAGGTAAGGGAATGGTTAGAC
AGAATGGTGGGGTGGAAGATATTTTCTAAAAACCCAAAACAAATTCCCAC
CCCTTTGATAtcctgaaaaaaatacaaacccCTCCCCACTTAACCAGTCA
ATATGTATTTTGTACCCCTCTCTATTATAGGTCACAAATATGTTCTTTAA
TTTGATTGACGGATTAACGGATTATTTGAAGCTAAGATAATAGCAGCTGC
CAAAGGCGTAGCCACAAGTTTTCGTTCGGGGAGcgagattgaaaaaaaaa
agaacttttgtTAGGGAAAATTTCTTCGAAAACTTTTCTTTTAACTTAAG
CCCCGCAGGCGAAAAGTTTTGCTCTAAGAAAGCTCAAATAGCATCAAAAG
GGCTTGAAAAGGTTTAAGTTAGCGAGAGAAAAGCtaaagaaaagtaaaga
aagCATGGAGACACCCCCCCCCACCTAAGGGTGGGAAAAGATTTTTGCGA
GAATTCAATAAACCTGCAAGAGCCTTAAATTCCACAGGGTGTGTCACTAA
AAGCTGAACCTCCTCATCAATGTAAAACAAATTGAAAGTCTATGAGATCT
AAATTTCCAATAGTCCAGAAAATCATACAAGcttcttaagaaacatttaa
aaatcaaatcatttcGTTCCAGGAGATACATACATCGATTGCgtcaaaac
aacacaaaatcCCGCCTCGTGCTCTGCATATGAAGACGTTGGAAAGAATT
ATCGAAGGTTTGATGGACTTTGCAACAATCTCAAGTTCCCAACTATTGGT
GCTATTAACACACCTTTCAGAAGAGTACTTTGTAAGTAATGCATAATGCA
ATTTTTGACCAGCAATAAAATATGGAGCTACTTATCGAAAGTTAGACCCA
AAAATAAAACCCAAAGCtgacatcaaaattttttcaaatgtttttcaatc
TTGAAACTCTGCAATTATATCCAATTATATCCATATTtgcaattttggct
attttaccacttttcaaaaattgaagtttgaGCGAGTCAATTTCGGGCCG
CTTCAACTTGATtccattgattatttcgatctgggaaaGATTTATTGGTT
CTACTGGACCATcattgaacttttggatcctgagatcctaaggtcctaac
tCTGAAGTCTAGCATTAAAACTCAGAGtgaaaactctacccttccaacct
aatttagagcgcttcaaaattgtttgtggttataaaatttcgggggggat
ttcccttttgtgccaagtattttgtcactgatggTAGATAGTTTACCGCT
CTTTATATCTAAAACCCATTAAAGCCGTTCAAAATTGTCTTCGTTGAATT
AtcataaacaaaattttaacttttagcTGCAAACTATGTTGATCGCCGTC
AAGTGGATACACCAAGAGGATTCCCTGGAACAAATCCTTCAAACATCCCA
GCTGCAAATAAAGTTTCAATAGCTGCCTTCACACCTCAATTCGTGAATGC
AGGAAATGCTGGAAAATTGTCAACATTGTTTACTACTGCTGGACAATTCT
TGGATCATGATATGGCAATTTCTCTGCATGGCAAATGCGACATCAAAAAG
TAAGAACTACTAGTTTCGacttagactagtaaaccacgtcgttgtatttc
gctgcagaatagactttcaatgggatctatttttttttatgttcactgaa
tccaatccactctcccgcggcaatttctattttttataagaactctttat
tataagcactattcccgcgttcctgtgtccaaggaaagacagacgcttgc
tagtctagtTTCGACTGGATTCTTTTTGCGTTCTTTTTGCCTcgttttaa
gcattttaaagttcgggcgagaaagttgcTTTTGGGCTGTTTGTTGAAtt
taattgaatatttcaatttgggtggggtttatagacttccaggccaTAAT
ATGAGCCATAATGGACTGTTCTTAAACGTTTGGATCCCaagctcctaagt
cttaagtttcatgttaaaactcagagttacgGAACGTTACAGTTCCAACC
TAACTTATAGGGCATCCATGTCTCTTGTCGTAGCAAAAATGTGTAACTTC
TCAATGTTTTATTTGAAAGATTCGTGTATTCACTTTCTATCTTGATTACA
GCTGCAGTTCAGACTCTGCCTTCAAGTATCCATGCTTCCCAATCAAGTTT
GATGATGACACATCTGAATGTACACCTTTCACTCGTGCTTTTGCTGAATG
CCAATTATATCCTGAACACAGAAGAACTGACAGACAACAAGTCAACACTT
TAACAGCATTTGTTGATGGATCACAAATCTATGGACATAATGAGGCTCGG
GCAAGATCATTACGACGTCTTGATGGTAAGTGACTGTAAAAATTAAGGCG
AAACATTATGttaaaaaatgcattttcatAAATCAAAATATACAAAGAGA
AAGGCACTATAAGAATCTGTAAATTATATACGACATGTGGAAAATCAGTA
GGAACTATTGATATAAGACTGACAACtgccaaatatctcaaaagTTTCAA
ATGCCTTGAAAgtaacatccccttctcacagaccaggTGGGATTTCATCA
GCTAGTGGGGGTAAAAAGTGGGCctaaactcgatggggattgatattccc
cgTGTTTTTTTATGACTGAGGATTTCAATTATATTGTTTTCTAGCCTGAA
AATTCGGTGGGGCTGGAAAAATAGCATGATACTTTGCaatgaggatttgc
ttatctgattatttcaGCGAGGAAAAATAGGGGggagtgggtttaccaac
tacggtatgtgcggcgaaaagattggcttttagaattgcacccttacagt
gcagaaagaATCgttgaaattcatacccttacattgcattttttcaaact
cttttagagcaaaaagatcaagatttttgagcaaaaatttagaatttttc
ctagatttgaTGAAATTGTcacccatacagtgcatttatcaaaagtccac
ccttacagtgcatttctgatattttgaaaaacatacccttaaccaccgca
catacccgtcggtcaatttgcctgactgcgcCCCCGGGCAGTAGGTCTGT
GGAACGGGGTGCAACGTCTATTTCTTTATCAATTACCATTTATTCACAGG
TACTGGAAAATTGAAAACGCGAAGTGGAAATCTTCTACCTCTAAAGAGGT
TGACAACTCCATGCGATCTTCTAGAAGGCTGTTCTATTGCTGGTGATATC
AGAGCTGACGAAAACATTGCTCTACACTCAATGCATACCGTTTGGGTACG
CGAACACAATAGAGTTGTTATAGAGCTCAAACAAAATCATAATAATTGGG
GTGAAGAGAAACTCTACCAAGAAGCTAGAAAGATTGTTAGTGCTGAATGG
CAACATGTCGTTTTCAATGAATGGGTACCAAGAATTGTTGATCTTGGATC
TTATGGTGGCTATAATTCTGGACTGGAACCAAGAATTATCAATGCTTTCT
CGACAGCTGCTTTCAGATTTGGTCACAGTTTAGCACCAAACGCATGGAGT
CAACTTGACAATAATTTTGAtgtgaaatttcaaaagatcagTCTTCGAGA
ATCTTTCTTCAATATTGAAAGCATCAATGAGAGAGGAATTGAACCAACCA
TGTTAGGTCTCGTTGGAAACCAATCAAATACAGTCGACGATATTTTTGCT
TTTGGATTGCTCCGAAAGTTATTCGTCCCGCCTGGTGAAGAAGGCCATAT
GGATTTGACAGCTCTCAACATCCAAAGAGGTCGTGACCATGGATTGCCAA
CGTACGGAAAATGGAGACAGTTTTGCAAGCTGCCAGCCATCTCGTCATTC
AGGGAGCTTGAATATCACATGCCCGCAAGAGTTGCTAAGAAGTTCTCAAT
ATTGTTCAATAGTCCAGCAGATATTGATCTCTTTGCAGCTGGAATTTCAG
AGAATCACGTACCAGGATTCCAAACAGGTCCAACATTCAAATGTTTGTTT
TGGCATCAATTCAGTCGATTGAGAGATGGTGATCGATATTATTACCTCAA
TCCTGGTGTTTTCACTGCAGAGCAGCAATCAGAATTGAAGAAAACATCAA
TGTCGAAAGTTTTGTGCAACAACTTGAAAGGAATCGTGTCGATCAACAAA
GATGCTTTTGTTCAGACAAAAGAAAAACGCACTCCATGTAATGATATCCC
TGGGCCAAATCTTAATGTGTTTTAACAACATATAATGGAAcatcaattca
attttttttttcaatttaattctTAATTTGTATTTTAAACTACCAAAGTA
AGTAACACCAAGACGATTCATAAGTCTTATAGGCAAAAGGCGTGTTCTTA
ACAAAAGAGGGTCTGCTACACAGATCTataaagctcgaagggctagatgt
cgtgctttaagccatcacaggccaaaaaaagtgaatagCGCAAGAAATAt
agttgctattgttttcaaaaatccgAGAAGCTTCTAATTGGTCAAACGCT
GAAATTGTATATTATtctcacgtgacttaggtaggatttcctacctagat
acgacacacttttcagcacgacatctagcccttcggactttataaatcta
tggtctgCTAGTTTCTAGATCTGCTATATACAGAACCGAGATAATTTAGT
AGAACGATCATGGTTTTTCAAATAAATTAGTTGAAACtaatattttcaag
atttttgtaCTGAAAATTGACGTCATCTTAAGACGACCCAAAAAGGGTTT
AAATCTTTTCGATTCAACTGCGGGTTTATTAGCTGTTCTTGAACCCATAA
GAAACCTCTCTGTTATATTTCAGCTACGTATGATTTATGTTAAGGTTAGG
GTCTTCTTTGAGCTAATTGTCTATCAGACAATTCTTGTATATCAATCGAT
CTAAAATTCGATACTGATTATTTTTAAGATATGAAactgtttttatttaa
tttactTAACTCGACAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053225-exon-scaffold_227-1491911889:365652..365810 | TCONS_00053225-exon-scaffold_227-1491911889:365652..365810 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1510915933:365652..365810 | TCONS_00053225-exon-scaffold_227-1510915933:365652..365810 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1575043694:365652..365810 | TCONS_00053225-exon-scaffold_227-1575043694:365652..365810 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1491911889:366496..366719 | TCONS_00053225-exon-scaffold_227-1491911889:366496..366719 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1510915933:366496..366719 | TCONS_00053225-exon-scaffold_227-1510915933:366496..366719 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1575043694:366496..366719 | TCONS_00053225-exon-scaffold_227-1575043694:366496..366719 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1491911889:368269..368888 | TCONS_00053225-exon-scaffold_227-1491911889:368269..368888 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1510915933:368269..368888 | TCONS_00053225-exon-scaffold_227-1510915933:368269..368888 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1575043694:368269..368888 | TCONS_00053225-exon-scaffold_227-1575043694:368269..368888 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1491911889:381071..382271 | TCONS_00053225-exon-scaffold_227-1491911889:381071..382271 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1510915933:381071..382271 | TCONS_00053225-exon-scaffold_227-1510915933:381071..382271 | Clytia hemisphaerica | exon |
| TCONS_00053225-exon-scaffold_227-1575043694:381071..382271 | TCONS_00053225-exon-scaffold_227-1575043694:381071..382271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:365652..382271 + |
Blast
BLAST of TCONS_00053225 vs. Swiss-Prot (Human)
Match: PXDN (Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2) HSP 1 Score: 288.115 bits (736), Expect = 1.811e-82 Identity = 183/494 (37.04%), Postives = 266/494 (53.85%), Query Frame = 2
Query: 101 GQFLDHDM--TVSNHGKCNIKD---CSSNSAFKYPCFPIKFDDGTSK------CTPFVRAF----XXXXXXXXXXXXXXXXVNTITAFVDGSQIYGHNARLARSLRKLDG-SGQLRT----RRGDLIPLKRLTT--PCDLL-------VGCSLAGDIRADENIALHSMHTVWVREHNRVASQLRLFNYHWREEKLYQEARKIVIAEWQHVVFNEWVPRIV------DLGRYRRYNSKLNPSIINAFATAAFRFGHSLAPNAWSQLDNNFD-MKFEKISLRESFFN-IQSINQRGIEPTMFGL--VGNQSNTVDDVFAFGLLRKLFVPPGEEGHMDLTAFNIQRGRDHGLPTYGKWRQFCKLPAISSFRELEYHMP-ARVAKKFSILFNSPADIDLFAAGISENHVPGFQTGPTFKCLFWHQFSRLRDGDRYYYLNPGVFTAEQQSELKKTSMSKVLCNNLKGIVSINKDAF--VQTKEKRTPCNDIPGPNLNVF 1456
GQFLDHD+ TV + D CS+ + PCF + S+ C FVR+ + S + R+Q+N +T+++D S +YG ARS+R L G LR R G PL T P + + + C LAGD RA+E + L SMHT+W REHNR+A++L N HW + +Y E RKIV AE QH+ + W+P+I+ LG Y Y+ +N I NAFATAAFRFGH+L +LD NF + + + L ++FF+ + +N+ GI+P + GL V + + L +LF +DL A NIQRGRDHG+P Y +R +C L A +F +L+ + + +K L+ S +IDLF A + E+ VPG + GPT CL QF RLRDGDR +Y NPGVF+ Q +++K+TS++++LC+N I + D F + C++IP +L V+
Sbjct: 822 GQFLDHDLDSTVVALSQARFSDGQHCSNVCSNDPPCFSVMIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVYGSTEHEARSIRDLASHRGLLRQGIVQRSGK--PLLPFATGPPTECMRDENESPIPCFLAGDHRANEQLGLTSMHTLWFREHNRIATELLKLNPHWDGDTIYYETRKIVGAEIQHITYQHWLPKILGEVGMRTLGEYHGYDPGINAGIFNAFATAAFRFGHTLVNPLLYRLDENFQPIAQDHLPLHKAFFSPFRIVNEGGIDPLLRGLFGVAGKMRVPSQLLNTELTERLFSM-AHTVALDLAAINIQRGRDHGIPPYHDYRVYCNLSAAHTFEDLKNEIKNPEIREKLKRLYGSTLNIDLFPALVVEDLVPGSRLGPTLMCLLSTQFKRLRDGDRLWYENPGVFSPAQLTQIKQTSLARILCDNADNITRVQSDVFRVAEFPHGYGSCDEIPRVDLRVW 1312
The following BLAST results are available for this feature:
|
