TCONS_00053216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053216
Unique NameTCONS_00053216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2068

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053216 ID=TCONS_00053216|Name=TCONS_00053216|organism=Clytia hemisphaerica|type=transcript|length=2068bp
GCCGTGTTTCAGTATAAATAGGGCTTGCCCTGCAAGACGAAATCAGTTCA
ACTTTCAACAGTCAAATTGAGAATAATAGGACAAAAAACAAGAGTTTTGA
AAACATCAAAAGATTTGACAATCAGTGAAGTAGAAATCAATATGATGAAA
GGATTACTTTTGGTGTTGTTTGCTGTCGTCCAACTTATTGCAGCAATTGA
TCCAGGAGACACATATATCGATTGTATCAAAACAACACCTAACCCTGCCT
CTTGCACAGCATATAACAACGTTGCAACAAGTTATCGAAGGTTTGATGGA
CTTTGCAACAATCTCAGATTCCCAACTGTTGGTGCTATCAACACACCCCT
TAGAAGAGTAATTTTTGCAGAATATGTTGACAGACGTCAAGTGGATTTGC
CAAGAGGATTCCCTGGCAGCAATCCTTCAAACATTCCATCAGCTAACAAA
GTGTCGACAGTTGTTTTCAAAGCCAAACAAGAGAACAAAGGAAACAATGC
CTTATTATCTACATTGTTTATGACGGCTGGTCAATTCTTGGATCATGATA
TGGCTTTATCTCTGCATGGTAAATGCGATATCAAAGATTGCAGTTCAGAT
TCCGCCTTTAAATATCCATGTTTTCCAATCAAGTTCGACGATGACACTTC
AGCCTGTACCCCATTTACTCGAGCATTTGCTGCATGCCAATCAGCATCTC
CATCCAGAAGAACTGATCGACAACAAGTCAATGATTTGACAGCCTTCGTT
GATGGTTCGCAAATTTATGGACATAATGAAGCTCTGGCACAATCACTGAG
AAAACTTGATGGTACTGGTCAATTGAAAGTCCGCAGTGGAAATTTATTAC
CTTTCCAACCATCCAGCAAACCATGTAGCACACCAGGTGGTTGTTCCTTG
TCTGGTGATATTAGAGCTGATGAGAATATTGCTCTTCACGCTATGCATAC
CGTTTGGGTACGCGAGCATAATAGAGTGGTTACCAAACTGGCACAACTCT
ACGATAACTGGAATGAAGAGAAGTTATACCAGGAAGCCAGAAAGATTGTT
ATCGGCGAATGGCAACATGTTGTTTTCAATGAATGGGTACCACGTGTGGT
TAACATTGGATCTTATGGTGGCTACAAATCAGGATTAGATCCAAGAATCA
TCAATGCTTTCTCGACAGCTGCCTTCAGATTTGGTCACAGTCTTGTACCC
AACTCATGGAGTCAACTTAACAACAATTATGACAAACTTTTCCCAAAGAT
TGGTCTTCAAGAATCCTTCTTTAATATTCAGAGCATCAATATCAGAGGTA
TTGAACCGACGATGTTGGGTCTTGTTGGTAACCAATCTAATACGGTGGAT
GATGAATTTGCTTTTGACTTGATCCGAAGATTATTCGTTCCACCAGGTCA
GTCAGGACATATGGATTTGACAGCTCTCAACATCCAAAGAGGTCGTGACC
ATGGATTGCCAACGTACGGAAAATGGAGACAGTTCTGCAATCTACCAGCC
ATCTCATCATTCAGTGAGCTTGCCAATCACATGCCTGCAGAAGTTGCTCA
GAAGTTCTCAACATTGTTCAATAGTCCAGCAGATATCGATCTCTTTGCAG
CTGGTATTGCTGAAAACCATGTACCAGGATTCCAAACTGGCCCAACATTC
AGATGTTTGTTTTGGCATCAATTCAGTCGATTGAGAGATGGTGATCGTTA
TTTCTATCTCAATCCTGGTGTTTTCACTGCAACACAACGATCTGAATTGA
CCAAAACCTCAATGTCGAAAATCCTGTGTGACAACTTAAATGGAATTGTC
TCAATCAACAAAGATGCTTTCattcaaaccaaaacaaaacgtACACCATG
TGCTAATATCGCTGGACCTGATCTCAGCGTGTTCTAATTGTATCATTATC
GaactttattattttgttgtttaacTGTTTATAATTAATTggacacattt
ttttttttggttgaatCTTATATGGGAAtagaatttaaagaattttttcg
ttgttttttgaaatattagtaATAATTACAATATGATAATagaatttaaa
atttaagatatatattat
Run BLAST on NCBI

transcript from alignment at scaffold_227:343349..347973+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053216 ID=TCONS_00053216|Name=TCONS_00053216|organism=Clytia hemisphaerica|type=transcript|length=4625bp|location=Sequence derived from alignment at scaffold_227:343349..347973+ (Clytia hemisphaerica)
GCCGTGTTTCAGTATAAATAGGGCTTGCCCTGCAAGACGAAATCAGTTCA
ACTTTCAACAGTCAAATTGAGAATAATAGGACAAAAAACAAGAGTTTTGA
AAACATCAAAAGATTTGACAATCAGTGAAGTAGAAATCAATATGATGAAA
GGATTACTTTTGGTGTTGTTTGCTGTCGTCCAACTTATTGCAGCAATTGA
TCCAGGTAATGTTTTATGATTCTTTGTAAATACATAGCAGTTATTTTATA
AGAGCAAACCGTATAAGAATATAAGGCTTCGATGGACAAAATGTTAAGAA
CAAGTTGAGAACATTTTAAGGGTTTGTGAACTCTAGAATACTCATTTTCT
TAGAAAATTGGACAAAAATACTTGCAGAATGGCGAAAATAACAATCTATT
AACAACATTTCTAAGCTTAAAACTCAAAAAGTTAAGAACATTCGAAAGCT
TTAAAAATTTTGGATGTTCCTTAAAAAAAACGTGTATTCCAGCCTCTTTC
AGATCTCGAAAATCAAGCTAGTTGGAAATTTCTAGAATTTCTGGTAGAAA
TCTTTTCAAATACATTTTCGATGGCTTTAAATCGGTTCTAATTTAGACAG
TTTGAAGGAATGGCAAACAAATAGGTACCTTATAAGAAACCCTACCCAGA
AAAGTCGGTGGTCTCAGCTTATAAACAGTATCATCAAGTAAGCAAGGAAT
TACGGAAATATCTTTATGAAAGAATGTTCTTTAACCCTTAGAAGCCAGAA
TACGTATATAACGTTTTGAAAAGGCTATTTTACCGATACACAGTCTTTTG
ATTATAACTCCTGACCACTTGAGATTCAGAGAAAAGAAATCCGCTAATTT
TTGTAGCTGAGAAAAAGGGGTTTCCAACGATACCAAAGTTGATACCTGAA
TCgtttgtcctggtcgagaaattgcctttgaaagaataaatttccagaaa
aaaatgatgaactttttggcctttttcaaaaaagttagcggctttgaaag
gttaagaaAGGCAACATCCTACTCATGATACGcgtcattgcaatgtcttc
tgacattacatcacggacccaacattGATAAAATTAAATCAGTGAATAct
taaccaatcagctgttgggtgcGTGAAAGACATTGTAAttatgcatatca
tgaatatattgGTATCGATAATGATAGTtaccaagaaaattaattcaTGC
ATCTTCAGCCAATTTAAAAAATGGATTAATGATTTTCCGATAATCGCTCG
ATttaaaatcagagaaaattgcTGTCAATTAGAAAGCATAATCATTTTAG
CATTCAGAAATATTGTAGCTCATTTACAGAtctgttttcttataaaaaat
ctatATTGCAAAtgcatttttagccaatttaagAGATCTAATTAAGGGGA
CATAAAAGCCATTATCATTTCCTTTAGCcattatgtccctttaaatcaTT
CCATGTTTTGCCTTTGTTTTCAACCAATATCAAGCTTAATTGATAAACTT
ATGTTTATAAACTTTGTGCCAAGAATTGAAAAGATTATGCTGCCGATATA
AGTGCCTAATTATCATAAAGTCTAGCTACtttatgaaaaacgaaaaagag
tGCCATTAAAATCACAACAAAAGCCAGTAAAGTTAAATTAAATGTACTTA
ATTTTCTATTCCAGGAGACACATATATCGATTGTATCAAAACAACACCTA
ACCCTGCCTCTTGCACAGCATATAACAACGTTGCAACAAGTTATCGAAGG
TTTGATGGACTTTGCAACAATCTCAGATTCCCAACTGTTGGTGCTATCAA
CACACCCCTTAGAAGAGTAATTTGTAAGTAATTATTTTAGATCTCAAGAA
ATATTTACCAATGACCTTTTATGAATAACAAAAACATCCATCCCCTTGAA
GCTACGTTAAatacttttttacatgaaaaaaaCTACAGGGACCTTTTTGC
TACCGTATGGAAGCCACTCTTAAAGGATTTGGTCCCATTAAACTGGCATG
GTGTTCACTCAAGGCGAAGAGACTTTAGTTTGAAACCATGTTAAGATCAT
GCTGATATAAAATCTTAATTCTAATTTCTTTCAGTTGCAGAATATGTTGA
CAGACGTCAAGTGGATTTGCCAAGAGGATTCCCTGGCAGCAATCCTTCAA
ACATTCCATCAGCTAACAAAGTGTCGACAGTTGTTTTCAAAGCCAAACAA
GAGAACAAAGGAAACAATGCCTTATTATCTACATTGTTTATGACGGCTGG
TCAATTCTTGGATCATGATATGGCTTTATCTCTGCATGGTAAATGCGATA
TCAAAGAGTAAGCTACATTTTAAACACTCTTTTAAAAGATCCCCAAAGAA
GTTTTGACAACAGCAATGACAGATTCCTTTAGATGAATGGGGAAATTCTT
TTTCCAATACTCAAATAAGTTTTTCGCTTTTTCAAGTATTCATCGGTTGA
CTTTcttcaatgaaaaattaaatagatTGGGGCAACAAGGGGGGTTATAA
TTTAGAAGATTAGAGATAATTAAGTACTATgataatacccctgtctcaca
accccggtTGGAATTCTTTTCTCATTAGGGatgaaaattcctattgaaat
cctaatgaGATAGCAAGAAAGAGGAATCCAGTGggtatggttttggagtg
caatttttaaacattaaatttcaagtggggatgaaatcaaagtcaatctc
tCAGTTGGGCTgcaattccagggtattttccaagtgggaaatttttgcca
aattttccattgggtctgtgagacagaggtgtcTTCTTTCATTTCCTCAG
GTCATCATTTCTTGTATTAGTTATAACCATTACTGGTTCCAGAAAACTTC
CAAAGGGTTTTCTGAAACACGgaagtcaaaaatttccaactttATAAGAT
TTAATTtgctaatctttttttttccttcaatttttacAGTTGCAGTTCAG
ATTCCGCCTTTAAATATCCATGTTTTCCAATCAAGTTCGACGATGACACT
TCAGCCTGTACCCCATTTACTCGAGCATTTGCTGCATGCCAATCAGCATC
TCCATCCAGAAGAACTGATCGACAACAAGTCAATGATTTGACAGCCTTCG
TTGATGGTTCGCAAATTTATGGACATAATGAAGCTCTGGCACAATCACTG
AGAAAACTTGATGGTGAGTTGCTTTGTTGCAAGTTAAAGAGCTAAAGAAA
AACTAGATCATTATTATTGACAAACTATGCAAATTCAGCGCTAGCCAGAG
TGtcaaacattcaaaattatCACTAcacatctttgaaaaattataataaG
AATTTAAAACTTAATGTAAGTCAcacaaatttatcaaattcaTAACGAAT
TTCATTTAATTCTTTCAGGTACTGGTCAATTGAAAGTCCGCAGTGGAAAT
TTATTACCTTTCCAACCATCCAGCAAACCATGTAGCACACCAGGTGGTTG
TTCCTTGTCTGGTGATATTAGAGCTGATGAGAATATTGCTCTTCACGCTA
TGCATACCGTTTGGGTACGCGAGCATAATAGAGTGGTTACCAAACTGGCA
CAACTCTACGATAACTGGAATGAAGAGAAGTTATACCAGGAAGCCAGAAA
GATTGTTATCGGCGAATGGCAACATGTTGTTTTCAATGAATGGGTACCAC
GTGTGGTTAACATTGGATCTTATGGTGGCTACAAATCAGGATTAGATCCA
AGAATCATCAATGCTTTCTCGACAGCTGCCTTCAGATTTGGTCACAGTCT
TGTACCCAACTCATGGAGTCAACTTAACAACAATTATGACAAACTTTTCC
CAAAGATTGGTCTTCAAGAATCCTTCTTTAATATTCAGAGCATCAATATC
AGAGGTATTGAACCGACGATGTTGGGTCTTGTTGGTAACCAATCTAATAC
GGTGGATGATGAATTTGCTTTTGACTTGATCCGAAGATTATTCGTTCCAC
CAGGTCAGTCAGGACATATGGATTTGACAGCTCTCAACATCCAAAGAGGT
CGTGACCATGGATTGCCAACGTACGGAAAATGGAGACAGTTCTGCAATCT
ACCAGCCATCTCATCATTCAGTGAGCTTGCCAATCACATGCCTGCAGAAG
TTGCTCAGAAGTTCTCAACATTGTTCAATAGTCCAGCAGATATCGATCTC
TTTGCAGCTGGTATTGCTGAAAACCATGTACCAGGATTCCAAACTGGCCC
AACATTCAGATGTTTGTTTTGGCATCAATTCAGTCGATTGAGAGATGGTG
ATCGTTATTTCTATCTCAATCCTGGTGTTTTCACTGCAACACAACGATCT
GAATTGACCAAAACCTCAATGTCGAAAATCCTGTGTGACAACTTAAATGG
AATTGTCTCAATCAACAAAGATGCTTTCattcaaaccaaaacaaaacgtA
CACCATGTGCTAATATCGCTGGACCTGATCTCAGCGTGTTCTAATTGTAT
CATTATCGaactttattattttgttgtttaacTGTTTATAATTAATTgga
cacatttttttttttggttgaatCTTATATGGGAAtagaatttaaagaat
tttttcgttgttttttgaaatattagtaATAATTACAATATGATAATaga
atttaaaatttaagatatatattat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033595XLOC_033595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053216-exon-scaffold_227-1491911889:343349..343553TCONS_00053216-exon-scaffold_227-1491911889:343349..343553Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1510915933:343349..343553TCONS_00053216-exon-scaffold_227-1510915933:343349..343553Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1575043694:343349..343553TCONS_00053216-exon-scaffold_227-1575043694:343349..343553Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1491911889:345013..345171TCONS_00053216-exon-scaffold_227-1491911889:345013..345171Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1510915933:345013..345171TCONS_00053216-exon-scaffold_227-1510915933:345013..345171Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1575043694:345013..345171TCONS_00053216-exon-scaffold_227-1575043694:345013..345171Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1491911889:345433..345655TCONS_00053216-exon-scaffold_227-1491911889:345433..345655Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1510915933:345433..345655TCONS_00053216-exon-scaffold_227-1510915933:345433..345655Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1575043694:345433..345655TCONS_00053216-exon-scaffold_227-1575043694:345433..345655Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1491911889:346288..346511TCONS_00053216-exon-scaffold_227-1491911889:346288..346511Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1510915933:346288..346511TCONS_00053216-exon-scaffold_227-1510915933:346288..346511Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1575043694:346288..346511TCONS_00053216-exon-scaffold_227-1575043694:346288..346511Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1491911889:346717..347973TCONS_00053216-exon-scaffold_227-1491911889:346717..347973Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1510915933:346717..347973TCONS_00053216-exon-scaffold_227-1510915933:346717..347973Clytia hemisphaericaexon
TCONS_00053216-exon-scaffold_227-1575043694:346717..347973TCONS_00053216-exon-scaffold_227-1575043694:346717..347973Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_227supercontigscaffold_227:343349..347973 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0381686	0.0191417	0	0.0217243	0.0257363	0	0.0490718	0.0229702	0	0.179281	0	0	7.19461	13.502	0.464932	0.739971	0.764163	1.63197	37.6927	360.519	0.0738072	0	0	0	0	0	0.0261684	0.0279276	0	0.0215812
Blast
[Close]
BLAST of TCONS_00053216 vs. Swiss-Prot (Human)
Match: PXDNL (Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3)

HSP 1 Score: 340.502 bits (872), Expect = 3.496e-101
Identity = 211/575 (36.70%), Postives = 311/575 (54.09%), Query Frame = 1 
Query:  283 YRRFDGLCNNLRFPTVGAINTPLRRVIFAEYVDRRQVDLPRGFPGSNPSNIPSANKVSTVVFKAKQENKGNNALLSTLFMTAGQFLDHDM-----ALSLHGKCDIKDCSSDSAFKYPCFPIKFDD-----DTSACTPFTRAFAACQSASPSRRTD----RQQVNDLTAFVDGSQIYGHNEALAQSLRKLDGTGQLKVRSGNLLPFQPSSKP-----------CS---TPGGCSLSGDIRADENIALHAMHTVWVREHNRVVTKLAQLYDNWNEEKLYQEARKIVIGEWQHVVFNEWVPRVVN------IGSYGGYKSGLDPRIINAFSTAAFRFGHSLVPNSWSQLNNNYDKLFP-KIGLQESFFN-IQSINIRGIEPTMLGLVGNQSNTVDDEFAF--DLIRRLFVPPGQSGHMDLTALNIQRGRDHGLPTYGKWRQFCNLPAISSFSELANHMP-AEVAQKFSTLFNSPADIDLFAAGIAENHVPGFQTGPTFRCLFWHQFSRLRDGDRYFYLNPGVFTATQRSELTKTSMSKILCDNLNGIVSINKDAFIQTKTKR--TPCANIAGPDLSVF 1884
            YR  DG CNNL+ PT GA  T   R++   Y D  +     G P  +   +P    V+TV  +A      ++   + + M  G FL+HD+     ALS     D + CSS      PCFP+           + C  F R+  AC S  PS   D    R+Q+N  TA++DGS +YG +E  +Q+LR       L +++G   P+ PS KP           C+       C L+GD RA+E++AL AMHT+W REHNR+ T+L+ L  +W    +YQEARKIV  E QH+ ++ W+P+V+       +  Y GY   ++  IIN+F+TAAFRFGH+L+     +LN    ++    +   ++ F+  + I   GI+P + GL G  +      +    +L +RLF     S  +D  A  IQRGRDHG+P Y  +R FCNL ++ +F +L N +  +E+ QK   L+ SP DIDL+ A + E+ +PG + GPT  CLF  QF RLRDGDR++Y NPGVFT  Q ++L + S+S++LCDN + I  +  D F++ +  +    C+ I   DL V+
Sbjct:  727 YRAHDGTCNNLQQPTWGAALTAFARLLQPAYRDGIRAPRGLGLPVGSRQPLPPPRLVATVWARAAAVTPDHS--YTRMLMHWGWFLEHDLDHTVPALSTARFSDGRPCSSVCTNDPPCFPMNTRHADPRGTHAPCMLFARSSPACASGRPSATVDSVYAREQINQQTAYIDGSNVYGSSERESQALRDPSVPRGL-LKTG--FPWPPSGKPLLPFSTGPPTECARQEQESPCFLAGDHRANEHLALAAMHTLWFREHNRMATELSALNPHWEGNTVYQEARKIVGAELQHITYSHWLPKVLGDPGTRMLRGYRGYNPNVNAGIINSFATAAFRFGHTLINPILYRLNATLGEISEGHLPFHKALFSPSRIIKEGGIDPVLRGLFGVAAKWRAPSYLLSPELTQRLFSA-AYSAAVDSAATIIQRGRDHGIPPYVDFRVFCNLTSVKNFEDLQNEIKDSEIRQKLRKLYGSPGDIDLWPALMVEDLIPGTRVGPTLMCLFVTQFQRLRDGDRFWYENPGVFTPAQLTQLKQASLSRVLCDNGDSIQQVQADVFVKAEYPQDYLNCSEIPKVDLRVW 1295
The following BLAST results are available for this feature:
BLAST of TCONS_00053216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PXDNL3.496e-10136.70Peroxidasin-like protein OS=Homo sapiens GN=PXDNL ... [more]
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