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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053211 ID=TCONS_00053211|Name=TCONS_00053211|organism=Clytia hemisphaerica|type=transcript|length=1151bp
aatagatgtaaacaaagaaaataaaatagagaaaagaaaacaaagaaaaa
tgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCATTAAGATC
GCTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATGACGACTTATTT
TGACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTTCTTCATTGCAA
CTAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCATCACCTTTTTA
ACAAGTCAATGCTATCGAACGCCATCACCCACAAAAATGCTCATTATTGG
TATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGGAGCCTTGG
TCATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCATCGCATAT
CACGAATGTACGATACAGAAATACAATTGTGCAGCGGCCTTTGGTATCAT
CTCATCAATTCTGTTCTTGATCGATGGAGCACTCCACATTGTACAACGTA
AGAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAGCATCCATGACA
GAAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCATCAACGGAAAA
AGCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGACAAAAGAGGCTA
CGGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGGCTACGGAGTCG
AAAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACAATAGG
TTGATTGAAGGGAGATGAAACAGGATTAAACTTAAGCAATGAACGAGAAA
GCCAATCCCTTCCAAAAGCTTGTAGGGCCTTTTAGATCGTCAGCTTAGGG
GGGCTTAGGGCCTTACGTCAGAATTAGTTCTATGCCATGCCATTACTGTT
GGAATccagattttgaaagaaatgccACCATAGTTTTTCATTTAGCGAAA
AAAAAGAAGCTAATCCTCCAGAATCCTCTAATTGTATTATTAAATAATTT
CCAGAAATGATTTGAGAATGGGATCGGGATGTTCATGGGGTATATCATTT
TAGTGTATTTATTGATATCATATTTGTCCATTGTTATTTTTAGAGtttat
tcattgaaatatttatgACAAATTATCAAATAATCAATGTGTcaataaat
c Run BLAST on NCBI protein sequence of TCONS_00053211-protein >TCONS_00053211-protein ID=TCONS_00053211-protein|Name=TCONS_00053211-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
IDVNKENKIEKRKQRKMKLELDYVKSYFGIIKIAEFSSLGISWICMTTYF
DSMFSQMGGKNVFFIATSMASWIIVLLWFITFLTSQCYRTPSPTKMLIIG
ILHLVFFNLHLISGALVIDSKTNSEMSCRTIAYHECTIQKYNCAAAFGII
SSILFLIDGALHIVQRKRLFPASMSVEEPASMTEEVVLEITTQSKSSTEK
ATESTTEEATDSTKEATDSTKEVTDSTKEATESKKEASEPTTEASEPTIG Run BLAST on NCBI transcript from alignment at scaffold_227:278289..283087+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053211 ID=TCONS_00053211|Name=TCONS_00053211|organism=Clytia hemisphaerica|type=transcript|length=4799bp|location=Sequence derived from alignment at scaffold_227:278289..283087+ (Clytia hemisphaerica)
aatagatgtaaacaaagaaaataaaatagagaaaagaaaacaaagaaaaa
tgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCATTAAGATC
GCTGAATTTGTAAGTCATACAATCTTTTATAAGACGATATAGTAGTTTTC
GACCACAGTTAAATGGTTATCTACCCTAGGGTATGGGATGAGCGTCACTC
TTTTTCCCTGGATCGCTCCTCCCTTGATCTTTTAATTACCAAGCATCAAG
CAAAGAGGAATCTATGCATCTTTGTCAAATAAAACACGAATATTTTAacc
tttctattgttttcataaaacctagaatgttttgaaaataaggaaaaata
tttgtattttaTAGGTTAGGTGAAATAGTAGCTTTGCATTTTATAGGCGG
CCAGTATCAAGGGCACAGGGTGTGCACGCATTTTGCACAGTCAGGCAACT
ATTTTTTGCACGTTAACTAGATGAAATTCGTAGGGAGACCTTGAAAATTG
TCCAGCATTTTACCAGTAATATGGAAATGTCACGATACTTATGTGATAAT
TAAATGTACGACTTTATTTTTCAGTCTTCACTTGGTATTAGCTGGATATG
TATGACGACTTATTTTGACAGTATGTTCAGTCAGATGGGAGGCAAAAATG
TCTTCTTCATTGCAACTAGTATGGCATCTTGGATTATTGTTCTTCTTTGG
TTCATCACCTTTTTAACAAGTCAATGCTATCGAACGCCATCACCCACAAA
AATGCTCATTGTAAGTATGTGGTCTGGGTGGACCGGGGCCGGGGAAGGAG
AGGCAAAACGAGGTATGAGTGAGAGATGTAAGACAGGGTTCTTTAGAATT
TAGTTGTAAACTGCTGATTGAAGGTCAAAAACTTCTAAACGAAAAAAATC
ATGAAGTTTTATTTTGACACATATCGTGTTTTGGTACCATTAGGTTAACA
CTTTTTCTAAAAACTTGTAGTGCGGGGTCgcataatttacaggaaaaaaa
taagatctagctgaaactttctccagaccttctctacaGGATGCTTATgt
ctcaggaaaaaatcccctaaaatcccactggtggaacatcccgtttttgg
gcaatttcttttttccctaggcaaaaccctaagggcgaaagtttttgaaa
gttttaaactcattttcagacaatatcatgtatgcCATTCGAAGGCTCTC
AAAataactatatagaagactttcaaacggttatagccgatttccttacc
taGCTCCTTACACTAAGTTAATCACGTTATATTTTGTTACAGATTGGTAT
CTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGGAGCCTTGGTCA
TTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCATCGCATATCAC
GAATGTACGATACAGAAATACAATTGTGCAGCGGTGAGTAAACGTTTCAT
ACCATAGTTTTAAAAAGCCCAAACGGCTAGATAGAGaactttggctgaaa
agtatGCTGTggctaggtaggaaatcctacctaggtcacgtgacattaca
atataatttcagcgcttgaccaatcagaagcttcgcggattttcgaaatc
aatagcaacaatattgtCTGCCATATTCACTTtattttgcttagaaaagc
tttAATCACTCCATCTAGTCCTTCgtgctttacagaaatctgtgtcGCTT
ACTTGTtactacactcttttttataaaaaccagtaaattCTTTATTAAGT
CTCAACACtgccctgtctcacagccccggtggaactctTTCTCATCGGGG
ATAGaaactcctattgaaatcccaatgggaatagaaattccattgttcca
aggttgaaaaattcagtggggatatggttttgaagtgcaatttctaagca
ctgaatttcgaatggggataagattaaagtcaatttcccagtggggttta
aattctagggtattttcacaccggggacgaaatattttctaaattttcca
gtggggctggggtcccagtgggtttgtgacacaggggtgtctcaaCTGTT
CTTAACTGTTTGTTACTTTGAGgctcattgttttaaattgttcttatttt
aggataaaattttcagaccgtagagtctctttaaccatgaacatataaac
gactggacatccatctcctttgtctttttgtagaaaagactgctagcttc
gttgccgcctcgttaaaagcataaaatgatacaatagattttgatgatat
accacttgggaaaaTCTTgttaacaacgtcaaaacttcgacaaaattCTC
TTTTGTTCTACTCTTCTTAAgccttttatctatatcataacagagaggag
gcaaaatcatcgtcagcttgtcaaaactccgactaatatttctaaatttt
gacttaaaagtgtctaataattttagggAGTGTCATAttctaatttaaaa
aattattggagtgacaaaagggattcaaaagtatacacacagttgaaatt
ttgcattttagagttgaaaatgttgataaaatatattgcaaacttgtgaa
aaaattcaaaaataatttttttgtgcattactgtaggagtaatgttaaag
ctctatcaatccttttacctaaataattcaaagaaataaaattatgacgg
aatattgtcggatttttcataccaattttgaaatacaggcggcaacgaag
ctcgcttcaaagagacaatgaAAGATAGACGTCAAGTCGTTTATATGTCC
ATgttttaactcgaacctctataactcaaatggTTCCTTCATTACCCtga
gaccaataatagaaattttatcgcgcacgtgtcaatctaatcactgctAG
AAAGAATAAAAGATGAAGAGCAAGTATTACCATagtaatgtctagcagac
tgtatcagtatgcagtttactatttacgaatcccccagaaacctccaagt
gtagttgaaatgagtttctttcaaaagaaatcttttacatgattccGAAG
TGtctaacagtaattactaaacttttgattatggaaatgtcacttttaat
agCACTTCATCGTGCAAACGTCatgattattacttctctcatttgaccga
aattcaatcccacaatccttttcgtcttaattcaaaagtcgtgaaagtta
ttactttttctttgtaattgagtgtaatttgcgtgaagcgtaataaacgc
aaagggtgattgatgggattgaatttcagtcaaagataaaaatcaatgtc
tatttttagatttgcgacggtatgctattgaatcgaaataatagacagac
tttatgttatgattctctatcactgactctttttaaaaagcgttgatttc
atttttgagttgtgttttcaacgacgggaataaaaatatcaactttgaac
ttcatccaaaatcttggatggtcgtcatggttacttttaatctgcgttga
ttgcgcgctgaatagaatctggattggtcggcaaagcgtcgatatatgat
ttcgatctgtgcttttcacggtattcCTTCAtttgaacaagttttatggt
cccctCTGTTAGAAATGCCTTGTAAacattaccttaagggaacttatttt
ggcgggacctaattttggcgagcggcgaaaatcttaaaaaaatttaattt
tggtgggaactaattttggcgagtcaacgaaatttttgattttggcggga
actaattttggcgaatgacagcgtaaatatggtctattttgccttatttt
gagcaattttgatgaatttcaggaattatttaggcaaggaaacaaaaaat
ttaattttggcgggaactaattttggcgaatttcgtctaaattcgccaaa
tccgccaaaattagttccaaatCTGTGTTCCCTGTGCggattcgagttat
ggagactccactgtattttgaaattgatttatAACAATTTTTCCACTATT
AACCATAGGCCTTTGGTATCATCTCATCAATTCTGTTCTTGATCGATGGA
GCACTCCACATTGTACAACGTAAGAGATTGTTCCCAGCATCTATGTCAGT
AGAAGAACCAGCATCCATGACAGAAGAGGTAGTACTAGAAATAACAACAC
AGTCTAAGTCATCAACGGAAAAAGCTACGGAGTCCACAACAGAAGAGGCT
ACGGATTCGACAAAAGAGGCTACGGATTCGACAAAAGAGGTCACGGATTC
AACTAAAGAGGCTACGGAGTCGAAAAAAGAGGCTACAGAGTCAACAACAG
AGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACAATAGAGGCTTCT
GAGCCAACAACAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAAC
AGTAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACAATAGGTT
GATTGAAGGGAGATGAAACAGGATTAAACTTAAGCAATGAACGAGAAAGC
CAATCCCTTCCAAAAGCTTGTAGGGCCTTTTAGATCGTCAGCTTAGGGGG
GCTTAGGGCCTTACGTCAGAATTAGTTCTATGCCATGCCATTACTGTTGG
AATccagattttgaaagaaatgccACCATAGTTTTTCATTTAGCGAAAAA
AAAGAAGCTAATCCTCCAGAATCCTCTAATTGTATTATTAAATAATTTCC
AGAAATGATTTGAGAATGGGATCGGGATGTTCATGGGGTATATCATTTTA
GTGTATTTATTGATATCATATTTGTCCATTGTTATTTTTAGAGtttattc
attgaaatatttatgACAAATTATCAAATAATCAATGTGTcaataaatc Coding sequence (CDS) from alignment at scaffold_227:278289..283087+ >TCONS_00053211 ID=TCONS_00053211|Name=TCONS_00053211|organism=Clytia hemisphaerica|type=CDS|length=3765bp|location=Sequence derived from alignment at scaffold_227:278289..283087+ (Clytia hemisphaerica)
atagatgtaaacaaagaaaataaaatagagaaaagaaaacaaagaaaaat
gaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCATTAAGATCG
CTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATGACGACTTATTTT
GACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTTCTTCATTGCAAC
TAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCATCACCTTTTTAA
CAAGTCAATGCTATCGAACGCCATCACCCACAAAAATGCTCATTATTGGT
ATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGGAGCCTTGGT
CATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCATCGCATATC
ACGAATGTACGATACAGAAATACAATTGTGCAGCGGCCTTTGGTATCATC
TCATCAATTCTGTTCTTGATCGATGGAGCACTCCACATTGTACAACGTAA
GAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAGCATCCATGACAG
AAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCATCAACGGAAAAA
GCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGACAAAAGAGGCTAC
GGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGGCTACGGAGTCGA
AAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACAATAGGT
TGAatagatgtaaacaaagaaaataaaatagagaaaagaaaacaaagaaa
aatgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCATTAAGA
TCGCTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATGACGACTTAT
TTTGACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTTCTTCATTGC
AACTAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCATCACCTTTT
TAACAAGTCAATGCTATCGAACGCCATCACCCACAAAAATGCTCATTATT
GGTATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGGAGCCTT
GGTCATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCATCGCAT
ATCACGAATGTACGATACAGAAATACAATTGTGCAGCGGCCTTTGGTATC
ATCTCATCAATTCTGTTCTTGATCGATGGAGCACTCCACATTGTACAACG
TAAGAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAGCATCCATGA
CAGAAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCATCAACGGAA
AAAGCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGACAAAAGAGGC
TACGGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGGCTACGGAGT
CGAAAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACAATA
GGTTGAatagatgtaaacaaagaaaataaaatagagaaaagaaaacaaag
aaaaatgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCATTA
AGATCGCTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATGACGACT
TATTTTGACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTTCTTCAT
TGCAACTAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCATCACCT
TTTTAACAAGTCAATGCTATCGAACGCCATCACCCACAAAAATGCTCATT
ATTGGTATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGGAGC
CTTGGTCATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCATCG
CATATCACGAATGTACGATACAGAAATACAATTGTGCAGCGGCCTTTGGT
ATCATCTCATCAATTCTGTTCTTGATCGATGGAGCACTCCACATTGTACA
ACGTAAGAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAGCATCCA
TGACAGAAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCATCAACG
GAAAAAGCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGACAAAAGA
GGCTACGGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGGCTACGG
AGTCGAAAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCAACA
ATAGGTTGAatagatgtaaacaaagaaaataaaatagagaaaagaaaaca
aagaaaaatgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCATCA
TTAAGATCGCTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATGACG
ACTTATTTTGACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTTCTT
CATTGCAACTAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCATCA
CCTTTTTAACAAGTCAATGCTATCGAACGCCATCACCCACAAAAATGCTC
ATTATTGGTATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTCTGG
AGCCTTGGTCATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAACCA
TCGCATATCACGAATGTACGATACAGAAATACAATTGTGCAGCGGCCTTT
GGTATCATCTCATCAATTCTGTTCTTGATCGATGGAGCACTCCACATTGT
ACAACGTAAGAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAGCAT
CCATGACAGAAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCATCA
ACGGAAAAAGCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGACAAA
AGAGGCTACGGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGGCTA
CGGAGTCGAAAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAGCCA
ACAATAGGTTGAatagatgtaaacaaagaaaataaaatagagaaaagaaa
acaaagaaaaatgaagctgGAACTGGATTATGTGAAGTCATATTTTGGCA
TCATTAAGATCGCTGAATTTTCTTCACTTGGTATTAGCTGGATATGTATG
ACGACTTATTTTGACAGTATGTTCAGTCAGATGGGAGGCAAAAATGTCTT
CTTCATTGCAACTAGTATGGCATCTTGGATTATTGTTCTTCTTTGGTTCA
TCACCTTTTTAACAAGTCAATGCTATCGAACGCCATCACCCACAAAAATG
CTCATTATTGGTATCTTACACTTGGTTTTCTTCAATTTGCATTTAATCTC
TGGAGCCTTGGTCATTGATAGTAAAACAAATTCAGAGATGTCATGCAGAA
CCATCGCATATCACGAATGTACGATACAGAAATACAATTGTGCAGCGGCC
TTTGGTATCATCTCATCAATTCTGTTCTTGATCGATGGAGCACTCCACAT
TGTACAACGTAAGAGATTGTTCCCAGCATCTATGTCAGTAGAAGAACCAG
CATCCATGACAGAAGAGGTAGTACTAGAAATAACAACACAGTCTAAGTCA
TCAACGGAAAAAGCTACGGAGTCCACAACAGAAGAGGCTACGGATTCGAC
AAAAGAGGCTACGGATTCGACAAAAGAGGTCACGGATTCAACTAAAGAGG
CTACGGAGTCGAAAAAAGAGGCTTCTGAGCCAACAACAGAGGCTTCTGAG
CCAACAATAGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053211-exon-scaffold_227-1491911889:278289..278397 | TCONS_00053211-exon-scaffold_227-1491911889:278289..278397 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1510915933:278289..278397 | TCONS_00053211-exon-scaffold_227-1510915933:278289..278397 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1575043694:278289..278397 | TCONS_00053211-exon-scaffold_227-1575043694:278289..278397 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1491911889:278863..279048 | TCONS_00053211-exon-scaffold_227-1491911889:278863..279048 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1510915933:278863..279048 | TCONS_00053211-exon-scaffold_227-1510915933:278863..279048 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1575043694:278863..279048 | TCONS_00053211-exon-scaffold_227-1575043694:278863..279048 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1491911889:279581..279721 | TCONS_00053211-exon-scaffold_227-1491911889:279581..279721 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1510915933:279581..279721 | TCONS_00053211-exon-scaffold_227-1510915933:279581..279721 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1575043694:279581..279721 | TCONS_00053211-exon-scaffold_227-1575043694:279581..279721 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1491911889:282247..282519 | TCONS_00053211-exon-scaffold_227-1491911889:282247..282519 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1510915933:282247..282519 | TCONS_00053211-exon-scaffold_227-1510915933:282247..282519 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1575043694:282247..282519 | TCONS_00053211-exon-scaffold_227-1575043694:282247..282519 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1491911889:282646..283087 | TCONS_00053211-exon-scaffold_227-1491911889:282646..283087 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1510915933:282646..283087 | TCONS_00053211-exon-scaffold_227-1510915933:282646..283087 | Clytia hemisphaerica | exon |
| TCONS_00053211-exon-scaffold_227-1575043694:282646..283087 | TCONS_00053211-exon-scaffold_227-1575043694:282646..283087 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_227 | supercontig | scaffold_227:278289..283087 + |
Blast
The following BLAST results are available for this feature:
|
