TCONS_00053187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053187
Unique NameTCONS_00053187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053187 ID=TCONS_00053187|Name=TCONS_00053187|organism=Clytia hemisphaerica|type=transcript|length=2308bp
gggcccttttgcaaattttgccgtTTTCCAGGGGATATCCACACATTTCT
AAGAATCTATTTTTGCtatgaaaaggttcgtccaccctccCGTACGGAAA
TTTAATTGAACAGCCCTGAACCATTTAGCTCTAGTTAAGACGGTCGACCT
TCTGCCTTGCCTTCCTTCGTTTTTTTGACGAAAGTCTTTTACATCGAAAG
GAGGCAAGgaagaaagtcggccgtctataAGTGTATTCTCAGATTTTAGT
CATGTAATGTGTAATTAAATAAATTATCTTATTTTTCTTAGAcaataaaa
attaagaaaatgtaaaaagtaaatTAAGAAGGTGAAAAGTGACGAGACAA
GAAAGACACAATTAGATTGGTTGATTAATTCAAATGGAAGTGGTATTGAT
TTGATTTCTTATTCATGCATGGCACAACAAAGTTTGGACGGGCACGTCAA
TGGCGAGTTAAAAATTACCATCAAAACTGAAGAAGAAGATCCATATTTTG
ATAACACTTGTAAGGACAATAATGTTAATAAAACAGTTGATCTTTTGGCG
ACTGAGCCTCGTACTGATGATTTGATTAAAATAAAGACTGAGACCGAGTC
AGACCGAGCATctgctaaaaaattaaaagtcaaCTCTAGAGAAAATGGGA
ATCCTGCTTCCTTTGTGCCAGGATCTCATTTACACGATGTGGATGGCTCC
AATGTACTGAGTACCCCTGGATTAAAGACTGTCATAGAAATACGACATTC
TAACAGTCCAGtaagtgtttttgaaaaacGTAGTGTCCTTAATGCTAAAG
CTGATGAGCTCCTCCGCAAGAAACACCCAGCAGGGAATATACAACATTTT
CGCAAGCTTTTTAAGTGTAAGGAATGTGGAGCGGGTTTTACATCAAACTT
TAGCATGCAAAGACATATGTGGATCCATACTGATAAAAAACCCTTTCAAT
GTAGATATTGTGGGGCTAAACTTAGCAGAAAAGACAAACTAAAAGACCAT
GAAGATGGACATGTAGGCatgtataaatataaaaaaagggAGCGATCGAT
CaaaccctctaaaccatgtGGAAACTGTGGAAAaacttttcaattaaaaa
tactATCTTTACAATGTAACCATGCTGGCGAGAAACATGATCACGTGTGT
GAACTAAATACAAAGAAAGTTACCGAGAACTTTTTAACTTCTTCTGAAAG
ACATGTTGGTGAAACCAAAATAAATCAATGCTGcgaatgtggtaaatgtt
ttgcaAATAAACTTCTCTTGGCAGATCACATCAGTATTGTTCACCGAAGT
TTTTCATTCATCATGTGTAATGTTTGTGGTTATACATCTCGTTCGAAGAG
TGTGTCTACAAGACATCAAACACTCCACCACCCAAACatggattttgatt
tttcattatttgaagcttcattttgtgaagaatgtggttaaaaatacacg
ggttgcaaaattatatcagtgcagtcaaaacatgtgattactggAAAAag
gttcacgtgattttattcccatgttacttggtTGATAACTTTTCGAGTTT
CGAGTAAAAGCATGAAAAGTAAAAGCTGTCTCCAGGCACCACCTTGGTGA
GGGGTGTCTCCATCTCATCTGTtgttcatttcaatttcaatttcgcATTT
TAGCACCAGGATCTTCTGTCACAGCAGTCTTTATTGCATAAAATCTGCAA
TTTTAGTCAATCTTCACCCCAAAGACAATCAaccagatttttttcttttg
caacCTAACTACTTATTTGTACAGTCTTGGGGTTCCAAGTCAACTAAATA
TAAATgcaaatattttgcatattcCACCTCCATAGCACAAGGTTCAAAAT
TATGAGAACAACAACTTTGATATCCAAGCCTAAGAACTCACACAAATCTA
CCTTCCCATTCAGCTTGTTGCGACAAAATTCGGCCCACTAACACTCTACT
AATAATCCTATAACCTCTGTTATCACAACTCCTGATGTGCACGACCGGCT
ATCATCCAGATGACTTGTATCATCTTGGGATCCGTCCTAAAATGATGCTT
GTCTCATCTTGATGATATTATTAAAGACCAATGAGAagtaaatgtcatgt
aacaagcaccatttcgagtaaaagcgtgatttgtcttcatactttaattt
tgcaacctgtgtattgtcAAAAATTTGATGATATTTCTGTATTTTTGTAT
ATCTTAATTTATTATTGTTGAACGTTTTTGAATTTATTCTAAGTTGACTG
CATTTGATCCATTGTGTACAAATCAAAAGCTTTATCTTGGTATTTTATTA
GCTTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00053187-protein

>TCONS_00053187-protein ID=TCONS_00053187-protein|Name=TCONS_00053187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MAQQSLDGHVNGELKITIKTEEEDPYFDNTCKDNNVNKTVDLLATEPRTD
DLIKIKTETESDRASAKKLKVNSRENGNPASFVPGSHLHDVDGSNVLSTP
GLKTVIEIRHSNSPVSVFEKRSVLNAKADELLRKKHPAGNIQHFRKLFKC
KECGAGFTSNFSMQRHMWIHTDKKPFQCRYCGAKLSRKDKLKDHEDGHVG
MYKYKKRERSIKPSKPCGNCGKTFQLKILSLQCNHAGEKHDHVCELNTKK
VTENFLTSSERHVGETKINQCCECGKCFANKLLLADHISIVHRSFSFIMC
NVCGYTSRSKSVSTRHQTLHHPNMDFDFSLFEASFCEECG
Run BLAST on NCBI

transcript from alignment at scaffold_226:145430..147737

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053187 ID=TCONS_00053187|Name=TCONS_00053187|organism=Clytia hemisphaerica|type=transcript|length=2308bp|location=Sequence derived from alignment at scaffold_226:145430..147737 (Clytia hemisphaerica)
ATAAAAGCTAATAAAATACCAAGATAAAGCTTTTGATTTGTACACAATGG
ATCAAATGCAGTCAACTTAGAATAAATTCAAAAACGTTCAACAATAATAA
ATTAAGATATACAAAAATACAGAAATATCATCAAATTTTTgacaatacac
aggttgcaaaattaaagtatgaagacaaatcacgcttttactcgaaatgg
tgcttgttacatgacatttactTCTCATTGGTCTTTAATAATATCATCAA
GATGAGACAAGCATCATTTTAGGACGGATCCCAAGATGATACAAGTCATC
TGGATGATAGCCGGTCGTGCACATCAGGAGTTGTGATAACAGAGGTTATA
GGATTATTAGTAGAGTGTTAGTGGGCCGAATTTTGTCGCAACAAGCTGAA
TGGGAAGGTAGATTTGTGTGAGTTCTTAGGCTTGGATATCAAAGTTGTTG
TTCTCATAATTTTGAACCTTGTGCTATGGAGGTGgaatatgcaaaatatt
tgcATTTATATTTAGTTGACTTGGAACCCCAAGACTGTACAAATAAGTAG
TTAGgttgcaaaagaaaaaaatctggtTGATTGTCTTTGGGGTGAAGATT
GACTAAAATTGCAGATTTTATGCAATAAAGACTGCTGTGACAGAAGATCC
TGGTGCTAAAATgcgaaattgaaattgaaatgaacaACAGATGAGATGGA
GACACCCCTCACCAAGGTGGTGCCTGGAGACAGCTTTTACTTTTCATGCT
TTTACTCGAAACTCGAAAAGTTATCAaccaagtaacatgggaataaaatc
acgtgaacctTTTTccagtaatcacatgttttgactgcactgatataatt
ttgcaacccgtgtatttttaaccacattcttcacaaaatgaagcttcaaa
taatgaaaaatcaaaatccatGTTTGGGTGGTGGAGTGTTTGATGTCTTG
TAGACACACTCTTCGAACGAGATGTATAACCACAAACATTACACATGATG
AATGAAAAACTTCGGTGAACAATACTGATGTGATCTGCCAAGAGAAGTTT
ATTtgcaaaacatttaccacattcgCAGCATTGATTTATTTTGGTTTCAC
CAACATGTCTTTCAGAAGAAGTTAAAAAGTTCTCGGTAACTTTCTTTGTA
TTTAGTTCACACACGTGATCATGTTTCTCGCCAGCATGGTTACATTGTAA
AGATagtatttttaattgaaaagttTTTCCACAGTTTCCacatggtttag
agggtttGATCGATCGCTccctttttttatatttatacatGCCTACATGT
CCATCTTCATGGTCTTTTAGTTTGTCTTTTCTGCTAAGTTTAGCCCCACA
ATATCTACATTGAAAGGGTTTTTTATCAGTATGGATCCACATATGTCTTT
GCATGCTAAAGTTTGATGTAAAACCCGCTCCACATTCCTTACACTTAAAA
AGCTTGCGAAAATGTTGTATATTCCCTGCTGGGTGTTTCTTGCGGAGGAG
CTCATCAGCTTTAGCATTAAGGACACTACgtttttcaaaaacacttaCTG
GACTGTTAGAATGTCGTATTTCTATGACAGTCTTTAATCCAGGGGTACTC
AGTACATTGGAGCCATCCACATCGTGTAAATGAGATCCTGGCACAAAGGA
AGCAGGATTCCCATTTTCTCTAGAGttgacttttaattttttagcagATG
CTCGGTCTGACTCGGTCTCAGTCTTTATTTTAATCAAATCATCAGTACGA
GGCTCAGTCGCCAAAAGATCAACTGTTTTATTAACATTATTGTCCTTACA
AGTGTTATCAAAATATGGATCTTCTTCTTCAGTTTTGATGGTAATTTTTA
ACTCGCCATTGACGTGCCCGTCCAAACTTTGTTGTGCCATGCATGAATAA
GAAATCAAATCAATACCACTTCCATTTGAATTAATCAACCAATCTAATTG
TGTCTTTCTTGTCTCGTCACTTTTCACCTTCTTAatttactttttacatt
ttcttaatttttattgTCTAAGAAAAATAAGATAATTTATTTAATTACAC
ATTACATGACTAAAATCTGAGAATACACTtatagacggccgactttcttc
CTTGCCTCCTTTCGATGTAAAAGACTTTCGTCAAAAAAACGAAGGAAGGC
AAGGCAGAAGGTCGACCGTCTTAACTAGAGCTAAATGGTTCAGGGCTGTT
CAATTAAATTTCCGTACGggagggtggacgaaccttttcataGCAAAAAT
AGATTCTTAGAAATGTGTGGATATCCCCTGGAAAacggcaaaatttgcaa
aagggccc

Coding sequence (CDS) from alignment at scaffold_226:145430..147737

>TCONS_00053187 ID=TCONS_00053187|Name=TCONS_00053187|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_226:145430..147737 (Clytia hemisphaerica)
ttaaccacattcttcacaaaatgaagcttcaaataatgaaaaatcaaaat
ccatGTTTGGGTGGTGGAGTGTTTGATGTCTTGTAGACACACTCTTCGAA
CGAGATGTATAACCACAAACATTACACATGATGAATGAAAAACTTCGGTG
AACAATACTGATGTGATCTGCCAAGAGAAGTTTATTtgcaaaacatttac
cacattcgCAGCATTGATTTATTTTGGTTTCACCAACATGTCTTTCAGAA
GAAGTTAAAAAGTTCTCGGTAACTTTCTTTGTATTTAGTTCACACACGTG
ATCATGTTTCTCGCCAGCATGGTTACATTGTAAAGATagtatttttaatt
gaaaagttTTTCCACAGTTTCCacatggtttagagggtttGATCGATCGC
TccctttttttatatttatacatGCCTACATGTCCATCTTCATGGTCTTT
TAGTTTGTCTTTTCTGCTAAGTTTAGCCCCACAATATCTACATTGAAAGG
GTTTTTTATCAGTATGGATCCACATATGTCTTTGCATGCTAAAGTTTGAT
GTAAAACCCGCTCCACATTCCTTACACTTAAAAAGCTTGCGAAAATGTTG
TATATTCCCTGCTGGGTGTTTCTTGCGGAGGAGCTCATCAGCTTTAGCAT
TAAGGACACTACgtttttcaaaaacacttaCTGGACTGTTAGAATGTCGT
ATTTCTATGACAGTCTTTAATCCAGGGGTACTCAGTACATTGGAGCCATC
CACATCGTGTAAATGAGATCCTGGCACAAAGGAAGCAGGATTCCCATTTT
CTCTAGAGttgacttttaattttttagcagATGCTCGGTCTGACTCGGTC
TCAGTCTTTATTTTAATCAAATCATCAGTACGAGGCTCAGTCGCCAAAAG
ATCAACTGTTTTATTAACATTATTGTCCTTACAAGTGTTATCAAAATATG
GATCTTCTTCTTCAGTTTTGATGGTAATTTTTAACTCGCCATTGACGTGC
CCGTCCAAACTTTGTTGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033570XLOC_033570Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053187-proteinTCONS_00053187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053187-exon-scaffold_226-1491911889:145430..147737TCONS_00053187-exon-scaffold_226-1491911889:145430..147737Clytia hemisphaericaexon
TCONS_00053187-exon-scaffold_226-1510915933:145430..147737TCONS_00053187-exon-scaffold_226-1510915933:145430..147737Clytia hemisphaericaexon
TCONS_00053187-exon-scaffold_226-1575043694:145430..147737TCONS_00053187-exon-scaffold_226-1575043694:145430..147737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:145430..147737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.0869	16.7131	14.9063	12.6725	4.78665	3.49122	4.75897	4.21117	2.72045	3.61671	2.1919	1.96994	1.3939	1.39241	1.33407	1.49346	2.83216	2.00281	0.70073	1.14888	2.11855	1.81186	9.0398	7.02644	2.27522	3.35255	1.13564	0.915171	3.59797	4.44138
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00053187 vs. Swiss-Prot (Human)
Match: ZFP69 (Zinc finger protein ZFP69 OS=Homo sapiens GN=ZFP69 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.910e-19
Identity = 80/268 (29.85%), Postives = 113/268 (42.16%), Query Frame = 2 
Query:  713 TPGLKTVIEIRHSNSPVSVFEKRSVLNAKADELLRKKHPAGNIQHFR-----KLFKCKECGAGFTSNFSMQRHMWIHTDKKPFQCRYCGAKLSRKDKLKDHEDGHVGMYKY---------------KKRERSIKPSKP--CGNCGKTF-QLKILSLQCN-HAGEKHDHVCELNTKKVTEN-FLTSSER-HVGETKINQCCECGKCFANKLLLADHISIVHRSFSFIMCNVCGYTSRSKSVSTRHQTLHHPNMDFDFSLFEASFCEECG 1438
            TP  +   ++   N P S    ++      +++   K P    +H R     K F+CKECG  F+ + S+  H  IHT +KPF+C  CG     +  L  H   H G   Y                +  R+    KP  C  CGKTF Q++ LS     H GEK  + C    K  +   +LT  +R H GE +  +C ECGK F  ++ L++H   VH       CN CG   R  S   +HQ  H     ++        C ECG
Sbjct:  247 TPTKRNTYKLDLINHPTSYIRTKTYECNICEKIF--KQPIHLTEHMRIHTGEKPFRCKECGRAFSQSASLSTHQRIHTGEKPFECEECGKAFRHRSSLNQHHRTHTGEKPYVCDKCQKAFSQNISLVQHLRTHSGEKPFTCNECGKTFRQIRHLSEHIRIHTGEK-PYACTACCKTFSHRAYLTHHQRIHTGE-RPYKCKECGKAFRQRIHLSNH-KTVHTGVKAYECNRCGKAYRHDSSFKKHQRHHTGEKPYE--------CNECG 501
The following BLAST results are available for this feature:
BLAST of TCONS_00053187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZFP694.910e-1929.85Zinc finger protein ZFP69 OS=Homo sapiens GN=ZFP69... [more]
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