TCONS_00053180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053180
Unique NameTCONS_00053180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053180 ID=TCONS_00053180|Name=TCONS_00053180|organism=Clytia hemisphaerica|type=transcript|length=811bp
gggtaccttttttaacctccacgagtcccaggtagggtcgcaaaaacacc
caAATAGAAATTTCAGTCCCTCGtaggtgccttttttggaaaattggagg
aaaaagtagaaaatttaagaaagttttggaatttcaatcccattcagggt
cactttttcgcaaatttcggcaaaatttttgaaaaaacgagtcccacgta
gggtccatttttcgaacctcagcggagcacccctgttggtcggcaagggt
agttcCCCCCCACCCGGGGTAGTGTCACGTTTCTTTCGAATTAACCAAAA
AATTACTTCTCTGTGCCTAAGATAAAATCTTTTAGTCTGTAAATTCTCAT
TTTACTTTGagattttgtttttactttttgtgCATAGttattttcgtttt
tcttgGAATTGATCAAATCAAGCAAATTGTCTACCTAACCCACACTCTGC
ACCGCAAGCCTAGCCCTTTTCTGAAcctttattttaaatatttttaatca
gTAAAGATAAAACTTTCCGAATGTCtgaaaaaattataacatttcttgga
aaatactaaaaattaGTGTATTGTGGAAAATTCTTGTTTTTACGCCTCTC
TCTccgataaattatttttttctaacaaTCATGCACGTAATTGCGAAAAG
GAAATTCCCCTTAGCAGAAAAGAGAGTGTTTCCTTAAAACGGAATGGCAT
GTAGCTCAGCTTTACGCTGTGACAGCACACCGGTATCAGCTTATCTTAGG
TATATCCTTTGGAATCACAgtaagaaatattattttgtcTAATTGGGAGG
TCAGAAATCAA
Run BLAST on NCBI

transcript from alignment at scaffold_226:8232..9042

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053180 ID=TCONS_00053180|Name=TCONS_00053180|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at scaffold_226:8232..9042 (Clytia hemisphaerica)
TTGATTTCTGACCTCCCAATTAgacaaaataatatttcttacTGTGATTC
CAAAGGATATACCTAAGATAAGCTGATACCGGTGTGCTGTCACAGCGTAA
AGCTGAGCTACATGCCATTCCGTTTTAAGGAAACACTCTCTTTTCTGCTA
AGGGGAATTTCCTTTTCGCAATTACGTGCATGAttgttagaaaaaaataa
tttatcggAGAGAGAGGCGTAAAAACAAGAATTTTCCACAATACACtaat
ttttagtattttccaagaaatgttataattttttcaGACATTCGGAAAGT
TTTATCTTTActgattaaaaatatttaaaataaaggTTCAGAAAAGGGCT
AGGCTTGCGGTGCAGAGTGTGGGTTAGGTAGACAATTTGCTTGATTTGAT
CAATTCcaagaaaaacgaaaataaCTATGcacaaaaagtaaaaacaaaat
ctCAAAGTAAAATGAGAATTTACAGACTAAAAGATTTTATCTTAGGCACA
GAGAAGTAATTTTTTGGTTAATTCGAAAGAAACGTGACACTACCCCGGGT
GGGGGGgaactacccttgccgaccaacaggggtgctccgctgaggttcga
aaaatggaccctacgtgggactcgttttttcaaaaattttgccgaaattt
gcgaaaaagtgaccctgaatgggattgaaattccaaaactttcttaaatt
ttctactttttcctccaattttccaaaaaaggcacctaCGAGGGACTGAA
ATTTCTATTtgggtgtttttgcgaccctacctgggactcgtggaggttaa
aaaaggtaccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033563XLOC_033563Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053180-exon-scaffold_226-1491911889:8232..9042TCONS_00053180-exon-scaffold_226-1491911889:8232..9042Clytia hemisphaericaexon
TCONS_00053180-exon-scaffold_226-1510915933:8232..9042TCONS_00053180-exon-scaffold_226-1510915933:8232..9042Clytia hemisphaericaexon
TCONS_00053180-exon-scaffold_226-1575043694:8232..9042TCONS_00053180-exon-scaffold_226-1575043694:8232..9042Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:8232..9042 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.120331	0.0592893	0.300761	0.675179	0.406204	0.588418	1.02922	1.28174	0.701004	0.626636	1.14111	0.743929	1.68509	1.36952	2.11397	1.83449	3.30682	5.71779	0.443437	0.681231	1.2425	1.2747	1.00707	0.550661	0.666946	0.522222	1.93462	1.63337	3.65474	1.95849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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