TCONS_00053168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053168
Unique NameTCONS_00053168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3574

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053168 ID=TCONS_00053168|Name=TCONS_00053168|organism=Clytia hemisphaerica|type=transcript|length=3574bp
GGCAGGGTGATAGAGAAAGTAGGTGGCAAGAATGTCCCCCCGATGTAGAG
TGCAAAAGTgttaatagtgcaattaacgattaatcacacTCCTCTAAACC
TATCAGATTTGAGTAATTTTGCACAACTGACGATTACATAGTTTTATACT
CTTTCCAAGATTTTGATTCCTAAAAGTTTGCATTTATTTAACTGATTTCt
ttctttccatttttagcTAAGAAAATATGGAATTAGTTACCATAATCCAT
AATAATCGTCCACTTCAACTTCCAAGACTCTTTTTAAGAGCAGATGATCT
TGCTGCATGTTTTGCTGTTGATCGGGAAGGACTACACTTAAAGTGTATAA
CTAACAATGGGgaaattaaaaactttattcCTCTTTCTGATGGAAAGTTT
GAACTTGATCCCACCATCAACAAATACAACCTGGTTGCAGTAAATAATGA
TACTCACAGACTCATTAATAACGACAGTAGCAGTAGTAGCAGAACTCCAA
ATGTTAGGTATGGCCATGGTTCAATGAACAATGAAAACAACGAAATGAGA
ACTCCTACCATTGCATATGGTCGGAGAGGCAATGCTGGTCTGAGAGCTGT
GCCGGGTTTTAAACGAAAGTCAAACTCATCTCCTGTTTTACCCGTTCCTC
TTGggaggaaaaaaaaagaagaaacaaaatcgaaaaagaaaatttcgatt
tgGTTGAGTGgaataaaaaagattgaaaaggaCCGTAATCgtgaattttt
tcatcaagaagACTTACGTAACAAGGAACCTGTTAAATTTGAACCCTACC
CTTTCTATGAAGTTCCGGTTTGTTTGGAAGAAATAAGTTGCAAGGAACAG
GTCAATGTAAGATCCATAATTGGAGAAATAAGACGACAAATAGGAGGCAT
GGATTATGTGATAACTGATAAAAAAGGCAACCCAATAAGGGATATGCCAA
ACACAAGGGGTGCTGAAAATTGGGTTGGAAATAAATACATAAGAGCAATC
GATGCAATCGCATACAAGAAATGGCGACCAGCAACATTTGAGCTCATCAA
AACAGATTATGAAATATATTCTTCAAGCTCAGATTCAGAGTTCGGAGACA
TTCCACCCCCACCATCGCCTTCATTTTCTGACCTTCACTTTTTGAACATC
CAATCAAGCACTAACTCAAGTTCGAGCTCCACTAGCACTACAGTAACCAA
CTCACCATCCACCAATGTAATTGAAACTTCAACAACTCAAGTTGCTTCTT
CGTCAACACATGTCTCTTCTACAGCGATGCAAAATCAATCATATGTTTCA
AACAGAGACTTACTGGCTGAGATTGAACGCTTAGAAGAAATTAACAACAG
AATTGAAAGCAAAATAGACCAGTTGCCAACCTTGCAACCAGAAACCTTGC
AACCTGAAGTCTCACAACCAGAAGCAGTTGTTTCCAAAGCAGATGTTAAG
GAATTGCTCACTTGTCCCATATGCACTTGTTGCAATTTCGACATTGTATA
TTGTCATACCTGTAATCAGTTTGCAGGCTGCAAAGATTGTATTTATCGCG
TCGATTCGTGCCCGCTTTGCCGGGCTAGTTTTTCCATCACTTGTGATGGA
TGTTCCAATGAAATCAATTTCCGCCCAAAATCGATCACGATTCCCGGATT
ACGCGATATTCTGGAAGAATAGTCTTAGAATGCGCTCTATTTTGAAAGTA
CATTTTGAGATTTATTTTTAAGAAGAAAGATTGCCATATTTAGATATTTT
ACGTTTTACTTTAGCTAGCAGacgtttaaatttgaaaaacatcTAAAGGC
TATTGTCAGTCGTCCAGGTTTTAAGCATTTTTATGCACGGCTAAAAGGGT
ACAAAACTACGTTTGAAGATTTTTATATTTAATAcattcattttatgttt
ttaaaaagaaaaagattttgttgtgaagactttgttataatttttatttc
agaacTTTTACtcatattattttattatttacttGTATTCATTATTGATC
CACTTTAAGCTAAGGGGACACGGAAACAAATCTTCTAGCGATTgcaacaa
taaaaatttttgttgcAATCGCATGGATATGTTTCATTGTGTTCCCACAT
CAGATATCGCTATTTTGCAACATTTTCCGCTAGATGTTTTTGTTGCagca
acaaaattttcatgttgCAATTGAGAATTATACCCTCGTGTCCCCTCACC
TTGAGAAgattttttgcaacatttttttattttacccaATCAAAGTCGTT
TATACAACTCAAAACAAATTATGACATAATCTTCCCATTTTTAACACGCA
AGACATGAGTTCAAAATGGTGGAGTtgctttgttttcatttttatgattt
tatttcGTGTGCTAGGCCTATACGACacggtgtaaaattttattgcGATT
GCgacaatttgtttttgttgcaattgcacaaaaaaaatttccgtgTCCCC
TTAGGtttaaggtatttttttttaaagacactTAGGGTTTTAACTGTGCT
ATTGATATTGTATTTGCACACAAATTACCTTTTACAGTTCAgtcatataa
aaaatatatctgCTTTTACCACTGTGTACGAGAACCTATTTTGTTCCGTT
AGTCCCTACAGTATTAGCCACTACATTATAATTCTTAGTCTTGTCAAGAG
TTAATTCTTAATGTGAGCAAAGCTTTTCAGGTTACTAAAATTTGACGTCT
GAGCTGGTCTGAGCgtctcttttttataaaaaaaacactttgtTTCCGAC
GAGTTTCACCCCTAACGTTTTAGGAGTTTTTATTATGTGTAGAGTTTTAA
TCTCTTTTGATATTTATTGATTCATTGATCACAAGTTTATTATTTGTGTA
GACTTTTATCTCTTTTgatatttattgatttattgatcACAAGTTTATAT
TATTTGTGTAGAGTTTTAATCTCTTTTgatatttattgattttttataag
aaatatacgtattatttattttgtaaaagtttAGGCTATTTTTATGTTGG
AGTATCTGACATATTATACATCAAAAGTTCCCAAATCTTACGTAGAATAG
GAATTTCCATGCTTAGCAAGGTCAAAATCGTATGGAATGGGCCAAATTTG
GGCCCAGAAAGCCAAAAAAGGCCTAAAATTATTATCCCCTCCCTGTACAA
GTCGAATTTTGAAAGTCTGAAACCATGCCATTTTCTGATAGTACTCATTA
ACATTTCGTGAAACCTTCCAGAaggtgctgacgtcagcaacgAAATGAGC
ATTTTTGGACCTAAAATCATCCAAAACTTGGTTCCAGGTGATCAAAACct
aacaaatgaccccattttttCATCAGCTTTTCGATTTGAATCTGATGATA
ACATCAAAACCCGATTTTCAGACTTTCGAAATTCGACTTGATAATCGTGT
TTAGGCCTTCTAGactcaaattcttttttcttgcttgagccTTATTCTCA
GCTCATGGACTAGTAGGgatttttcagatttcttttttccctttaGCTCG
AGTATGGCATTAttagtttttcttattttacttCTGATTAGGCTAGTTAT
CTTATGTTTTACTTCGTATTTTAT
Run BLAST on NCBI

transcript from alignment at scaffold_226:212629..216917-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053168 ID=TCONS_00053168|Name=TCONS_00053168|organism=Clytia hemisphaerica|type=transcript|length=4289bp|location=Sequence derived from alignment at scaffold_226:212629..216917- (Clytia hemisphaerica)
GGCAGGGTGATAGAGAAAGTAGGTGGCAAGAATGTCCCCCCGATGTAGAG TGCAAAAGTGTTAATAGTGCAATTAACGATTAATCACACTCCTCTAAACC TATCAGATTTGAGTAATTTTGCACAACTGACGATTACATAGTTTTATACT CTTTCCAAGATTTTGATTCCTAAAAGTTTGCATTTATTTAACTGATTTCT TTCTTTCCATTTTTAGCTAAGAAAATATGGAATTAGTTACCATAATCCAT AATAATCGTCCACTTCAACTTCCAAGACTCTTTTTAAGAGCAGATGATCT TGCTGCATGTTTTGCTGTTGATCGGGAAGGACTACACTTAAAGTGTATAA CTAACAATGGGGAAATTAAAAACTTTATTCCTCTTTCTGATGGAAAGTTT GAACTTGATCCCACCATCAACAAATACAACCTGGTTGCAGTAAATAATGA TACTCACAGACTCATTAATAACGACAGTAGCAGTAGTAGCAGAACTCCAA ATGTTAGGTATGGCCATGGTTCAATGAACAATGAAAACAACGAAATGAGA ACTCCTACCATTGCATATGGTCGGAGAGGCAATGCTGGTCTGAGAGCTGT GCCGGGTTTTAAACGAAAGTCAAACTCATCTCCTGTTTTACCCGTTCCTC TTGGGAGGAAAAAAAAAGAAGAAACAAAATCGAAAAAGAAAATTTCGATT TGGTTGAGTGGAATAAAAAAGATTGAAAAGGACCGTAATCGTGAATTTTT TCATCAAGAAGACTTACGTAACAAGGAACCTGTTAAATTTGAACCCTACC CTTTCTATGAAGTTCCGGTTTGTTTGGAAGAAATAAGTTGCAAGGAACAG GTCAATGTAAGATCCATAATTGGAGAAATAAGACGACAAATAGGAGGCAT GGATTATGTGATAACTGATAAAAAAGGCAACCCAATAAGGGATATGCCAA ACACAAGGGGTAAGTTTGGGCTAAATCAGGCTAAATGACTTTGGAAAATT TAAGCAGTAATACAATTTTTGGGTCTCATCAACCCCTTATACACTAAAAT ATTTTTTTGCCTGGCTTTGTACTGTTTTTTTTTTTGTAACTAAATTTCAA CTCTAGTCACCAAGCCTGTTCCTTTAATTACATTCCAGCCTTTTCTCAAT TTTTTACTACTATATAGGGCTACTTGCATTACAACAATATATTATTGGCC CAATATATTGCTGTAGTTTAAGTTGCCCTTAACAGGGCTTTTCCTTTCAT TCAACCAAAAGTATTGGACCTTAATGATGGACAAATACTTTTGTGTCTCC TTTTCTTGGGAAATATTGGGTAATAATCAACTTTTTGGGGTTAATTCTCA AAATTGCATCAATAAAAGTTATTTCTGACCAACCATCCTCCAAACAAAAC CTAAGCAAACCAACATTTTTAAGTCCTTATATTTATGGGATTTATTTCAG CGTTTTTCTCTTCTCTCTATTTTCAATTGTTTTTGACTGTCTTTATAAGG TATGTCCAATCAACTACTACTTTTGTAGCAAGAAAATGTTGTGGTTTTTG GAGCTCGACCGCAAAACCGTGAAATTTTCATGCAGTAAAAAAAGAACAAT CCTACCTGCCCCTACAGCAAAAATTGTCAATTTGGGCTGAATTCATTATA ATTTTCACATTATGTTTTATCTAGGTGCTGAAAATTGGGTTGGAAATAAA TACATAAGAGCAATCGATGCAATCGCATACAAGAAATGGCGACCAGCAAC ATTTGAGCTCATCAAAACAGATTATGAAATATATTCTTCAAGCTCAGATT CAGAGTTCGGAGACATTCCACCCCCACCATCGCCTTCATTTTCTGACCTT CACTTTTTGAACATCCAATCAAGCACTAACTCAAGTTCGAGCTCCACTAG CACTACAGTAACCAACTCACCATCCACCAATGTAATTGAAACTTCAACAA CTCAAGTTGCTTCTTCGTCAACACATGTCTCTTCTACAGCGATGCAAAAT CAATCATATGTTTCAAACAGAGACTTACTGGCTGAGATTGAACGCTTAGA AGAAATTAACAACAGAATTGAAAGCAAAATAGACCAGTTGCCAACCTTGC AACCAGAAACCTTGCAACCTGAAGTCTCACAACCAGAAGCAGTTGTTTCC AAAGCAGATGTTAAGGAATTGCTCACTTGTCCCATATGCACTTGTTGCAA TTTCGACATTGTATATTGTCATACCTGTAATCAGTTTGCAGGCTGCAAAG ATTGTATTTATCGCGTCGATTCGTGCCCGCTTTGCCGGGCTAGTTTTTCC ATCACTTGTGATGGATGTTCCAATGAAATCAATTTCCGCCCAAAATCGAT CACGATTCCCGGATTACGCGATATTCTGGAAGAATAGTCTTAGAATGCGC TCTATTTTGAAAGTACATTTTGAGATTTATTTTTAAGAAGAAAGATTGCC ATATTTAGATATTTTACGTTTTACTTTAGCTAGCAGACGTTTAAATTTGA AAAACATCTAAAGGCTATTGTCAGTCGTCCAGGTTTTAAGCATTTTTATG CACGGCTAAAAGGGTACAAAACTACGTTTGAAGATTTTTATATTTAATAC ATTCATTTTATGTTTTTAAAAAGAAAAAGATTTTGTTGTGAAGACTTTGT TATAATTTTTATTTCAGAACTTTTACTCATATTATTTTATTATTTACTTG TATTCATTATTGATCCACTTTAAGCTAAGGGGACACGGAAACAAATCTTC TAGCGATTGCAACAATAAAAATTTTTGTTGCAATCGCATGGATATGTTTC ATTGTGTTCCCACATCAGATATCGCTATTTTGCAACATTTTCCGCTAGAT GTTTTTGTTGCAGCAACAAAATTTTCATGTTGCAATTGAGAATTATACCC TCGTGTCCCCTCACCTTGAGAAGATTTTTTGCAACATTTTTTTATTTTAC CCAATCAAAGTCGTTTATACAACTCAAAACAAATTATGACATAATCTTCC CATTTTTAACACGCAAGACATGAGTTCAAAATGGTGGAGTTGCTTTGTTT TCATTTTTATGATTTTATTTCGTGTGCTAGGCCTATACGACACGGTGTAA AATTTTATTGCGATTGCGACAATTTGTTTTTGTTGCAATTGCACAAAAAA AATTTCCGTGTCCCCTTAGGTTTAAGGTATTTTTTTTTAAAGACACTTAG GGTTTTAACTGTGCTATTGATATTGTATTTGCACACAAATTACCTTTTAC AGTTCAGTCATATAAAAAATATATCTGCTTTTACCACTGTGTACGAGAAC CTATTTTGTTCCGTTAGTCCCTACAGTATTAGCCACTACATTATAATTCT TAGTCTTGTCAAGAGTTAATTCTTAATGTGAGCAAAGCTTTTCAGGTTAC TAAAATTTGACGTCTGAGCTGGTCTGAGCGTCTCTTTTTTATAAAAAAAA CACTTTGTTTCCGACGAGTTTCACCCCTAACGTTTTAGGAGTTTTTATTA TGTGTAGAGTTTTAATCTCTTTTGATATTTATTGATTCATTGATCACAAG TTTATTATTTGTGTAGACTTTTATCTCTTTTGATATTTATTGATTTATTG ATCACAAGTTTATATTATTTGTGTAGAGTTTTAATCTCTTTTGATATTTA TTGATTTTTTATAAGAAATATACGTATTATTTATTTTGTAAAAGTTTAGG CTATTTTTATGTTGGAGTATCTGACATATTATACATCAAAAGTTCCCAAA TCTTACGTAGAATAGGAATTTCCATGCTTAGCAAGGTCAAAATCGTATGG AATGGGCCAAATTTGGGCCCAGAAAGCCAAAAAAGGCCTAAAATTATTAT CCCCTCCCTGTACAAGTCGAATTTTGAAAGTCTGAAACCATGCCATTTTC TGATAGTACTCATTAACATTTCGTGAAACCTTCCAGAAGGTGCTGACGTC AGCAACGAAATGAGCATTTTTGGACCTAAAATCATCCAAAACTTGGTTCC AGGTGATCAAAACCTAACAAATGACCCCATTTTTTCATCAGCTTTTCGAT TTGAATCTGATGATAACATCAAAACCCGATTTTCAGACTTTCGAAATTCG ACTTGATAATCGTGTTTAGGCCTTCTAGACTCAAATTCTTTTTTCTTGCT TGAGCCTTATTCTCAGCTCATGGACTAGTAGGGATTTTTCAGATTTCTTT TTTCCCTTTAGCTCGAGTATGGCATTATTAGTTTTTCTTATTTTACTTCT GATTAGGCTAGTTATCTTATGTTTTACTTCGTATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033559XLOC_033559Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053168-exon-scaffold_226-1575043694:215959..216917TCONS_00053168-exon-scaffold_226-1575043694:215959..216917Clytia hemisphaericaexon
TCONS_00053168-exon-scaffold_226-1575043694:212629..215243TCONS_00053168-exon-scaffold_226-1575043694:212629..215243Clytia hemisphaericaexon
TCONS_00053168-exon-scaffold_226-1510915933:215959..216917TCONS_00053168-exon-scaffold_226-1510915933:215959..216917Clytia hemisphaericaexon
TCONS_00053168-exon-scaffold_226-1510915933:212629..215243TCONS_00053168-exon-scaffold_226-1510915933:212629..215243Clytia hemisphaericaexon
TCONS_00053168-exon-scaffold_226-1491911889:215959..216917TCONS_00053168-exon-scaffold_226-1491911889:215959..216917Clytia hemisphaericaexon
TCONS_00053168-exon-scaffold_226-1491911889:212629..215243TCONS_00053168-exon-scaffold_226-1491911889:212629..215243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_226supercontigscaffold_226:212629..216917 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 1.22676 0.29249 0.389848 0 0 0 0 0 0 0 0.0811133 0 0 0 0 0 0.176056 0.745732 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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