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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053162 ID=TCONS_00053162|Name=TCONS_00053162|organism=Clytia hemisphaerica|type=transcript|length=3118bp
GTCAACTATAAATCTTTGTTTTACACAAAAAGTAGTCTTTGACTATTTAT
TAATTACAGAAAGTTGAATCGGTACAAGTTGAGTCATTTCAGATCAAGTC
TTGCTTAGCTGAGGGTTAGGAcgttttttcaaagaaatctgTCGACGTAT
AAATCTTGAATTGCTGGAAGTTGTATCCAGTaatatacaacaaaatacag
CGAATTAGGCTTTATCATCCAAACACCTTACAAGAAGTATCACCCAAAAA
TATAGAACATGAGGAATTTATCATTATGTGTTTTTTTCCTATTGGCTGTA
ACCATGGTAGCATCACGACCAATCGAAGATAGTTCTGctCAAGGTGACGT
CATAATGTCAGATGACGCTTTACAAGTCGTTTACAATGATATCTTAAATA
CAGCCAATCAAGTAAACTCAGCTACCAGCGAACTGAAACGTGCCGTAGGG
AACCGGTACTCGTCTTGTAATCCGGATGTCGAAGATTGCGGAAGTGAGAA
AAACAAACCACACATCAGTCAAATAAATGCTGACGCTGATAAACGAGAAG
GTTATGGAAACGGATTCAGCCCTTGGCTTCACCGTTACAAAGATACCGCA
TCTGAGAGGGTCCctatctaccattttgattctaGGGCTGCCAAGAGAGT
TCCAATGTATCACTTCAAGGATGGAGCGTCGCCAGAGAAGAGAGCTCACA
AAGTTCCAATGTACCACTTTAAGGATGTAGCGTCGCCAGAGAAGAGAGCT
CACAAAGTTCCAATGTACCATTTTAAGGATGCAGTATCGTCTAGGAAGAG
ATCGCGCAATGTACCAATGTACCACTTTAAGGATGTAGCGTCGCCTGAGA
AGAGAGCTCGAGTAGTTCCAATGTACCACTTTAAGGATGTAGCATCGCCT
GAAAAGAGAGCTCGAGTAGTTCCAATGTACCATTTCAAGGATGTAGCGTC
GCCTGAGAAGAGAGCTCGAGTAGTTCCAATGTACCATTTTAAAGACACTA
AAGCTGAAAAGTTCTCGTTTTACCATTGATGAATTTTAGCCCAGCCGATG
AATTTCTGCACAATTTTATCATGTACTCACTCTGGTCAAAATGACCTAAA
ACTTAACGgttgatttaaaggttttgtttttaaataagagtaatatcgtt
tgcttactcatcagctttgatttcaaaactttttcacatttgattgacac
ggatgtggagcaagctTTGTCAgagaaaggaaaagaaaaacattttttgc
ttatatcagaacgtgcatttaacgaaatttaataaaagaatttgtttaca
taatGTTTTGTAGAACCAGGCATGCAAACGTCTGTCATCCATCCGGAATC
CGGGGgagggggcactcatatggtccaaCCCACGGCATTTGCCgtcctta
agggtaggtttttcgagaccctcgaaatacactgtaagggtgtacttttg
atagagtacACTATAAAGTTCTAGAAGGTTTAGAAattcagtgccccccc
cccccccccgggtccgGAATACATGCTTGTCGTAGACTATCACAGGAAAG
ACACTAGCCTGTACAGTGTTTCGAATGATGTATGGGATGTTGTCTTATAT
CTAATTGTAGCAAATAGTAAGCATttcttcacaattttatttaatattat
aCTAATTAATGATTTTACGGgtcttatttttacaaaatgattTCTAAATG
TAACAAATTAACCCGTCTTCAATATTCTGTAAATAGCACGAAGAAAAACA
AGTTATTATGCGTACCTTTTCgtgcaaaaatttcaaactctttcTATTCC
CGCCTCTTACCTTTATCCCGCACACAGCATACAAAGCTCTTATGTCTGTC
TCCGCGAATCACAAAGAGAGGATCTCCAAATTCAGCAATATAGAAAGtac
tgcaaaatttgaagaatcctTCCATTTCAgtctgtgaaaaaaaaattcga
caCTTCTCTATAAAAAATCATGAATCACTTACTCTAAATGTACCAAATTT
ACATAACCCgccaaagttttttttgaatctCACCCGGATTTCACcgatat
aaaaaatatacacaATAGCGTCAGACGCCAAAGCTGTAGCTATCAACAAT
CGAGTAATAATACTGAAGACACGCGGTGGCGATGCCTCCATTACAGCGTA
CACAAAATCGATTAAATCTGGAACGAGCCACAAAGCGATAAAACTACCGA
CAAGTAACACAGGTAGATATAACGAACGTCTTCTAGCTTTTGACCTTTCC
GTATTTGCTTCAGCCTCAATATTACGGTCGGTCCTTGTTATATTGTCTCT
ATTACTCCCGGTGTCGTCCTTATTCCTACCATTATTATTAATATCGTGTT
GGCTTTTGAACTCTATTCTTGGAGTCCTTTCTTCAATATCTTTTGCTATT
TGTCGCTTATCTGGAAGCTTGACAGTTATTGAGGCTATTACTGCTTTACG
TTCCCGTCTGTTCCTACGTATTAATGAAAATAAGTAACCGTAAATAATGA
CGGCGATCAGAAGGAACGTAATTTCTTCTGACGGCCAAATATATAGAATT
GTAATTCGTTGAATACAGCTCGAGTCGCATACGTGGCGAGTTAAGTAGAA
AACTAATTGAAATAGTATTGACACCAACCATGCTATGGCGATCGCGAATT
TAGTTTTACGGGCACTGACTAATAACGGGTACTTGATGTTAAAATGGATT
TCCAGAAAGCGGTCTATAGTCAACAAACACATGATTAATATGTAGCAAAG
ATAGGTGCCGTGTGCGTCCACCAGCCGTATCTGTAATGCCGTATCCTTCA
AATGGAAAAGATAAACGATCCTATACATGATTTTCAATAAGCATTTAATA
ATAGCGATAATACTTAAGTTGATTAAATAATACTTCTGATTGGTGGAGAT
ACTATTGATGCGTGTGGTGAGTAGGAGGTGTAATCCAATAACATGTATTG
TACAAGGTATAGTGTAAATGACGATGAATGTGATTTGTTCTTCCCTAGGT
GCTTCAAAGATGGTTGGACCACTAGCACTACTCATACTTCATGCAACATT
TGAGACATTATATTGCGTATGTGAAGTTCTACAATTCCACAAGGTATGtg
tctttgtttttcttatcC Run BLAST on NCBI transcript from alignment at scaffold_226:565185..568887+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053162 ID=TCONS_00053162|Name=TCONS_00053162|organism=Clytia hemisphaerica|type=transcript|length=3703bp|location=Sequence derived from alignment at scaffold_226:565185..568887+ (Clytia hemisphaerica)
GTCAACTATAAATCTTTGTTTTACACAAAAAGTAGTCTTTGACTATTTAT
TAATTACAGAAAGTTGAATCGGTACAAGTTGAGTCATTTCAGATCAAGTC
TTGCTTAGCTGAGGGTTAGGAcgttttttcaaagaaatctgTCGACGTAT
AAATCTTGAATTGCTGGAAGTTGTATCCAGTaatatacaacaaaatacag
CGAATTAGGCTTTATCATCCAAACACCTTACAAGAAGTATCACCCAAAAA
TATAGAACATGAGGAATTTATCATTATGTGTTTTTTTCCTATTGGCTGTA
ACCATGGTAGCATCACGACCAATCGAAGATAGTTCTGGTAAGTCTTCACA
TTATTACTGATATAAACCTCCGACTAACTAAATACAGAAGTTTTCTTCCC
CGGTAAACAAAACTCTTCCTTAGATTTTCAACATCGTATTTTAGCTCGTG
GTTTTGTGGGAAATCTTTAAGCGGTAATGAAACGTTCTTAATCGAATACc
aaccccctcaaaatttaaccCTGATGATTCCTCTTGATTTATTCTaatct
attttttttgaaaaacctttttaGAGCAAGGCTACCATTCGGAAAGTTTT
CAGTAATACTCCCGAAAgtgtaatttgtaatttcctcTATAGCGTCCCTT
TAAAAGAATACTCCACTGTCACAACACTACTGGTTTAAGGTCACCATAAC
TTTGAAGATATCGATAATAGTATATctttaaatattgaaataaaagaaaa
tcaacgCCAAAAAATCTTAGCCCGTTTATCAGTCTTTCCCTCTTTTGGCG
TTGAATCTTTCCTTCCTAGCATGCCTCTTTCTTCAATACATCAGGCCACA
CTCAAAGAACGATTTTGTTATAAGCTCATCATAGACCTACAACATAATTA
TTTTcacaatattgattttcagctCAAGGTGACGTCATAATGTCAGATGA
CGCTTTACAAGTCGTTTACAATGATATCTTAAATACAGCCAATCAAGTAA
ACTCAGCTACCAGCGAACTGAAACGTGCCGTAGGGAACCGGTACTCGTCT
TGTAATCCGGATGTCGAAGATTGCGGAAGTGAGAAAAACAAACCACACAT
CAGTCAAATAAATGCTGACGCTGATAAACGAGAAGGTTATGGAAACGGAT
TCAGCCCTTGGCTTCACCGTTACAAAGATACCGCATCTGAGAGGGTCCct
atctaccattttgattctaGGGCTGCCAAGAGAGTTCCAATGTATCACTT
CAAGGATGGAGCGTCGCCAGAGAAGAGAGCTCACAAAGTTCCAATGTACC
ACTTTAAGGATGTAGCGTCGCCAGAGAAGAGAGCTCACAAAGTTCCAATG
TACCATTTTAAGGATGCAGTATCGTCTAGGAAGAGATCGCGCAATGTACC
AATGTACCACTTTAAGGATGTAGCGTCGCCTGAGAAGAGAGCTCGAGTAG
TTCCAATGTACCACTTTAAGGATGTAGCATCGCCTGAAAAGAGAGCTCGA
GTAGTTCCAATGTACCATTTCAAGGATGTAGCGTCGCCTGAGAAGAGAGC
TCGAGTAGTTCCAATGTACCATTTTAAAGACACTAAAGCTGAAAAGTTCT
CGTTTTACCATTGATGAATTTTAGCCCAGCCGATGAATTTCTGCACAATT
TTATCATGTACTCACTCTGGTCAAAATGACCTAAAACTTAACGgttgatt
taaaggttttgtttttaaataagagtaatatcgtttgcttactcatcagc
tttgatttcaaaactttttcacatttgattgacacggatgtggagcaagc
tTTGTCAgagaaaggaaaagaaaaacattttttgcttatatcagaacgtg
catttaacgaaatttaataaaagaatttgtttacataatGTTTTGTAGAA
CCAGGCATGCAAACGTCTGTCATCCATCCGGAATCCGGGGgagggggcac
tcatatggtccaaCCCACGGCATTTGCCgtccttaagggtaggtttttcg
agaccctcgaaatacactgtaagggtgtacttttgatagagtacACTATA
AAGTTCTAGAAGGTTTAGAAattcagtgccccccccccccccccgggtcc
gGAATACATGCTTGTCGTAGACTATCACAGGAAAGACACTAGCCTGTACA
GTGTTTCGAATGATGTATGGGATGTTGTCTTATATCTAATTGTAGCAAAT
AGTAAGCATttcttcacaattttatttaatattataCTAATTAATGATTT
TACGGgtcttatttttacaaaatgattTCTAAATGTAACAAATTAACCCG
TCTTCAATATTCTGTAAATAGCACGAAGAAAAACAAGTTATTATGCGTAC
CTTTTCgtgcaaaaatttcaaactctttcTATTCCCGCCTCTTACCTTTA
TCCCGCACACAGCATACAAAGCTCTTATGTCTGTCTCCGCGAATCACAAA
GAGAGGATCTCCAAATTCAGCAATATAGAAAGtactgcaaaatttgaaga
atcctTCCATTTCAgtctgtgaaaaaaaaattcgacaCTTCTCTATAAAA
AATCATGAATCACTTACTCTAAATGTACCAAATTTACATAACCCgccaaa
gttttttttgaatctCACCCGGATTTCACcgatataaaaaatatacacaA
TAGCGTCAGACGCCAAAGCTGTAGCTATCAACAATCGAGTAATAATACTG
AAGACACGCGGTGGCGATGCCTCCATTACAGCGTACACAAAATCGATTAA
ATCTGGAACGAGCCACAAAGCGATAAAACTACCGACAAGTAACACAGGTA
GATATAACGAACGTCTTCTAGCTTTTGACCTTTCCGTATTTGCTTCAGCC
TCAATATTACGGTCGGTCCTTGTTATATTGTCTCTATTACTCCCGGTGTC
GTCCTTATTCCTACCATTATTATTAATATCGTGTTGGCTTTTGAACTCTA
TTCTTGGAGTCCTTTCTTCAATATCTTTTGCTATTTGTCGCTTATCTGGA
AGCTTGACAGTTATTGAGGCTATTACTGCTTTACGTTCCCGTCTGTTCCT
ACGTATTAATGAAAATAAGTAACCGTAAATAATGACGGCGATCAGAAGGA
ACGTAATTTCTTCTGACGGCCAAATATATAGAATTGTAATTCGTTGAATA
CAGCTCGAGTCGCATACGTGGCGAGTTAAGTAGAAAACTAATTGAAATAG
TATTGACACCAACCATGCTATGGCGATCGCGAATTTAGTTTTACGGGCAC
TGACTAATAACGGGTACTTGATGTTAAAATGGATTTCCAGAAAGCGGTCT
ATAGTCAACAAACACATGATTAATATGTAGCAAAGATAGGTGCCGTGTGC
GTCCACCAGCCGTATCTGTAATGCCGTATCCTTCAAATGGAAAAGATAAA
CGATCCTATACATGATTTTCAATAAGCATTTAATAATAGCGATAATACTT
AAGTTGATTAAATAATACTTCTGATTGGTGGAGATACTATTGATGCGTGT
GGTGAGTAGGAGGTGTAATCCAATAACATGTATTGTACAAGGTATAGTGT
AAATGACGATGAATGTGATTTGTTCTTCCCTAGGTGCTTCAAAGATGGTT
GGACCACTAGCACTACTCATACTTCATGCAACATTTGAGACATTATATTG
CGTATGTGAAGTTCTACAATTCCACAAGGTATGtgtctttgtttttctta
tcC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053162-exon-scaffold_226-1491911889:565185..565521 | TCONS_00053162-exon-scaffold_226-1491911889:565185..565521 | Clytia hemisphaerica | exon |
| TCONS_00053162-exon-scaffold_226-1510915933:565185..565521 | TCONS_00053162-exon-scaffold_226-1510915933:565185..565521 | Clytia hemisphaerica | exon |
| TCONS_00053162-exon-scaffold_226-1575043694:565185..565521 | TCONS_00053162-exon-scaffold_226-1575043694:565185..565521 | Clytia hemisphaerica | exon |
| TCONS_00053162-exon-scaffold_226-1491911889:566107..568887 | TCONS_00053162-exon-scaffold_226-1491911889:566107..568887 | Clytia hemisphaerica | exon |
| TCONS_00053162-exon-scaffold_226-1510915933:566107..568887 | TCONS_00053162-exon-scaffold_226-1510915933:566107..568887 | Clytia hemisphaerica | exon |
| TCONS_00053162-exon-scaffold_226-1575043694:566107..568887 | TCONS_00053162-exon-scaffold_226-1575043694:566107..568887 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:565185..568887 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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