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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053160 ID=TCONS_00053160|Name=TCONS_00053160|organism=Clytia hemisphaerica|type=transcript|length=1949bpRun BLAST on NCBI protein sequence of TCONS_00053160-protein >TCONS_00053160-protein ID=TCONS_00053160-protein|Name=TCONS_00053160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=649bp KKTKSTYRRMTPRFVKIHVTADDSFMKKHADKESAVKYINSLIKGTNLVFRun BLAST on NCBI transcript from alignment at scaffold_226:524690..541207+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00053160 ID=TCONS_00053160|Name=TCONS_00053160|organism=Clytia hemisphaerica|type=transcript|length=16518bp|location=Sequence derived from alignment at scaffold_226:524690..541207+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_226:524690..541207+ >TCONS_00053160 ID=TCONS_00053160|Name=TCONS_00053160|organism=Clytia hemisphaerica|type=CDS|length=31152bp|location=Sequence derived from alignment at scaffold_226:524690..541207+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00053160 vs. Swiss-Prot (Human)
Match: ATS3 (A disintegrin and metalloproteinase with thrombospondin motifs 3 OS=Homo sapiens GN=ADAMTS3 PE=2 SV=4) HSP 1 Score: 225.713 bits (574), Expect = 2.980e-62 Identity = 126/367 (34.33%), Postives = 201/367 (54.77%), Query Frame = 1
Query: 43 VKIHVTADDSFMKKHADKESAVKYINSLIKGTNLVFRDKSLDASFHVILE---GINYVKNREVKIQSKDPKKSLKDACRIMYDKKK-ELGLDFHF--GLFLTRRNFG---YSGFTPLYRMCVNYKSCALAFDSGIRTSFIIAHEIGHSVGIAHDGDHNECGVDVAHGSVMAPQVHSRFDRFFWSNCSRRQIHQNIRYFSCLLKEKPPKINTSALDLPGVTHNLDGQCKYTFGRKYSGCLGIRSPDQYCRFLFCRVPNQKNRCSYLSLPPVDGTICAKNQWCVKGKCIPFGRLTPTPVDGGFSKWSAWSSCTTRCGPGVSKRYRKCDSPRPIFGGKPCNGSKTEWKMCEDYTPCHIHKTFEDQRDDSC 1116
+++ + DDS ++ H KE Y+ +L+ N ++ D+SL +V+L + Y K+ + I+ +P +SL++ CR +++ +L H +FLTR++FG G+ P+ MC +SC L + G ++F++AHE GH +G+ HDG N CG + A GSVMAP V + F R+ WS CS +++ + I + CLL + +LPG+ +++D QC++ FG Y C R+ D C+ L+C P+ C PP+DGT CA +WC KG C+ + DG + W+ + SC+ CG GV R R+C++P PI GG+ C G E+++C + C H FED R C
Sbjct: 258 IEVLLGVDDSVVRFHG-KEHVQNYLLTLMNIVNEIYHDESLGVHINVVLVRMIMLGYAKSISL-IERGNPSRSLENVCRWASQQQRSDLNHSEHHDHAIFLTRQDFGPAGMQGYAPVTGMCHPVRSCTLNHEDGFSSAFVVAHETGHVLGMEHDGQGNRCGDETAMGSVMAPLVQAAFHRYHWSRCSGQELKRYIHSYDCLLDDPFDHDWPKLPELPGINYSMDEQCRFDFGVGYKMCTAFRTFDP-CKQLWCSHPDNPYFCKTKKGPPLDGTECAAGKWCYKGHCM-WKNANQQKQDGNWGSWTKFGSCSRTCGTGVRFRTRQCNNPMPINGGQDCPGVNFEYQLC-NTEECQKH--FEDFRAQQC 617 The following BLAST results are available for this feature:
BLAST of TCONS_00053160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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