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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053108 ID=TCONS_00053108|Name=TCONS_00053108|organism=Clytia hemisphaerica|type=transcript|length=435bp
TTCAAATCGAATGAGTTGCGAAGAAGGAAGGCGGCAATGGCGATGAGAGG
AGAATTTGGCACGCCCAATTAAAAGAGagatTACTATTGTTTTTATACTA
CTGACACATACAATAAATTGTAACCATGGGGAAGAtgctatcaaaaatct
ttggtAACAAAGAGATGAGGATATTGATGCTTGGTCTCGATGCTGCAGGA
AAAACTACTATATTATACAAATTGAAATTGGGACAGTCAGTGACAACAAT
ACCAACTGTAGGATTTAACGTAGAAACAGTTACatataaaaatgtcaaat
tcaacGTCTGGGTAAGATCTAGTTTTTTAGTCATAACATGTAGATATAAC
CTGTATTGATGGTAATCTAAACATAAAGTAAAATGAAGAGCGAATAAAGC
TTGTTTTCTGTCTTAACAAGTAATGATGTTCTTTT Run BLAST on NCBI transcript from alignment at scaffold_226:157735..166571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053108 ID=TCONS_00053108|Name=TCONS_00053108|organism=Clytia hemisphaerica|type=transcript|length=8837bp|location=Sequence derived from alignment at scaffold_226:157735..166571+ (Clytia hemisphaerica)
TTCAAATCGAATGAGTTGCGAAGAAGGAAGGCGGCAATGGCGATGAGAGG
AGAATTTGGCACGCCCAATTAAAAGAGGTATTTTTATCATGTAATTTGTt
gagttttgacttttttcttatttacgATGTTTTTGCAGTACgtgtaattt
ttatttttcacttttcattgagattttctttcattttgagGTAATTCTTT
GGTGACTCAAAGTTCTTGCCCCATACCATTTGCATTGCCAGTCTGTATCA
GTTTTTTGATACACCATTTTAACTTTCCCTCTTATATGATTTCGTGAAAC
AACTGTTCACAAGCAATGCCTAACAGTTCGCAAACAATCAATAGGAATTC
TAGGCCCACATCATGATCTAAAAGGAAACTCTTGCCTTGGCATGGCGGTG
CACTAAACTGTGTTTTGGTTGGAAACTCTCTCTCTGTTTGACTTTTGAGT
CACTGAGTGGGAAAGCCTAAGTTATAACCCCCAAAGTGTGATtccacttt
tttcttttttaattcgCTATCCTTCCTTGTAGTACCCTAGCTTTGATAAA
TGTCGACATACCTTGTTGTCAAGTAGTATCTGGTATGATGCAAAGTACTA
GAAGACCCTGTCGACGCActggactgtccggtgtatttgtccggtggcaa
aaagtatcctttcgctacaccggatgCAATaagttgcatacagggaattt
tggacgccggacatttatgaaacaaaaaattaagaaacataggacgcacc
ggactggtcatgtccggtgttttgattgtccggtgggaaaaaatatcctt
ctccgacaccggacatccgactcccttaagtccggtgtagaaattgtccg
gtggtaaaaaaaatactcattttacaccggactttcgtgtgtccggtgtt
cgttaagtccggtgcgtcggcagggtcctagtACTAGCACtacaggccat
attttagaaaggcaaggcagcgttcgttggtggccaaaaagggcactttt
tcttatgtttttccactaaaaaggctgtttttaacaaaattttagtaatt
tcaagagGGGCAGCGTCCAATAACCGGACgcttaaagggcatgaaaaatg
gcctgcaCTAGTAGGttgagtgatttttttaaacagcttatTCAGAATGT
TTTATAAACATTTCaaagaccagatagttgctttgatggaattagacaag
gtacGTCGGCATCACACAAAGTTACAGACATATCTATTTGGGGAGGACCC
TCCCGGCCCTCCGGGAAACTTCCGGTGCTTCCGGAGCGAGTGATTCTTAA
CACAGTTCCAGAGTTCCGGTGCAGACCAATTGCCGAAAATCATGCTCTGG
AACACCAGAAGTGCTTGGAGCACAAAAAACAGCACTTTTTGCTCCAGACG
TTTCCAGAGCGCCAAGAGGGTCCTATTTAGGGACGTACAGCAGGATATCG
ATACATCAGTATTGACCTTTTTTAGATCAGTATATACATCAGTataggga
gaaaaaaaatccgtaaTTGGTATTTCTGGAGCATCACTGTATTGGTAAAA
GACCCTTTTTATGTCagtatttcaatatttttggtcaGCTATCAGTATCA
TGTGGAATTATTCAAGAAATCAAGTTttcatcattgaaatttttaaaaga
aacaaGGGGAAGGGAGTCTAAGAAATCTGAATATAAATGTTggttcaaaa
tattgaaatcgaTCAGTAttggtaccgtcaactgctccaactggggacga
gtgtacgcaacatgggacttgttgatatatatatatggcctgtattttca
cttaagggggtagtcatatgagattttgaaaattggtgaaaaatttatca
atNggcctgtattttcacttaagggggtagtcatatgagattttgaaaat
tggtgaaaaatttatcaatttcgggatttaaggctttttagtatccttta
tccTTTCTGAacataccctgaaaatttcaaggccgtagcATAAATATCTG
CCGATATATTGGGTTTCTTATGAGACCTGGTTTACAATTTTCTCCTTAGC
AACGGGAAATCGCATCCGTTGCTAGGGCCTCATTTCCGTATGGCTGCTCT
AAACATAGCATCATGACATANttgttgaaatggtcaaacaccggacccca
cgggttgagtgagcagagaatttgctgaaacacatcaaaggtaatcaaag
gtAGGTAATGATCCCAACCTTGCTATTATTCCCATCgctaaaaagggtgt
cgaaattagaagagggatgtcgacattagacagTCAGGGACAGTCGCCTT
NTCTTTTTGAGacgcttttgttcagaagacaatttcttacttctgattgg
ttcttatggattattagaattgtgattgattccaccggtggatttttctg
aaaatcaccatatatggaatcaattttttgtgctctttccattgGGAGCA
ATCAAATCATGCGCAGTTTGCTCGTTCACAAGATAATTATacccgtctcc
tgattaggagacgtgaacctcctgattaggagacgggtcccTGACTGTTA
GACCAACTTCTTACGGTACCAAACTATTTTAAACTCAATTACCAAACAca
aacaaaataccaaaatgtacaaagaaaaatttcttagttCTTNTAGCCCC
CCCCCCAAGAGCCAGGGGGGTTGCATTCCATATGACCCCCCTACTTCAGT
TTTTTGGATGGTGTCATCCTCCCTTAAAATACCCCCCTTCTTCAAAGTAG
ACTAGACAGGAGAATTCATTTCACATGATGGATCTCCAGCCAGGCTAGAT
CCAAGAAAATATGAAGAATGAAAATGTGTCAGAGGGGTTGGAACTGTCTT
TCGCCCTAAGTTAGTCTGTTACTAGCCCAAAGAAAGTGAAATAAACTGCT
TCATAAAATTTCAGTGTACTAGCTGAGGCAACTTTCAGTCCAATGTtcac
tttccaacagaaaaagTTGGTTTGTTTGTTTGGTTTTATATACCTGCAAG
CTAGCGTCCAAAAATGACAGGTCGATGCTCATGCTTTTTACATGTGTCGG
GCGGTATAAGAAATTGTGAAATCGAACAGAGATATCTCACTTGCTTTGAA
AGGGCGCTTTTTACTTGTTTTGGCTATTTGTCTCTACTAAACTCACTTGT
CTTCCCGTTCGATCATTAGAATTGAAAATGAACAAGCGAGTCTTTGCTTG
GCAATTTGTTAACTTACCGCTGACCAGACGCGAAATTTCATCGCGGATTC
CTTAAATTCAAATCGAATGAGTTGCGAAGAAGGAAGGCGGCAATGGCGAT
GAGAGGAGAATTTGGCACGCCCAATTAAAAGAGGTATTTTTATCATGTAA
TTTGTtgagttttgacttttttcttatttacgATGTTTTTGCAGTACGtg
tattctttatttttcacttttcattgagattttctttcattttgagGTAA
TTCTTTGGTGACTCAAAGTTCTTGCCCCATGCCATTTGCATTGCCAGTCN
TGAGGTAATTCTTTGGTGACTCAAAGTTCTTGCCCCATACCATTTGCATT
GCCAGTCTGTATCAGTTTTTTGATACACCATTTTAACTTTCCCTCTTATA
TGATTTCGTGAAACAACTGTTCACAAGCAATGCCTAACAGTTCGCAAATA
ATCAATAGGAATTCTAGGCCCACATCATGATCTAAAAGGAAACTCTTGCC
TTGGCATGGCGGTGCACTAAACTGTGTTTCGGTTGGAAACTCTCTCTCTG
TTTGACTTTTGAGTCACTGAGTGGGAAAGCCTAAGTTATAACCCCCAAAG
TGTGATtccacttttttcttttttaattcgCTATCCTTCCTTGTAGTACC
CTAGCTTTGATAAATGTCGACATACCTTGTTGTCAAGTAGTATCTGGTAT
GATGCAAAGTACTAGAAGACCCTGTCGACGCActggactgtccggtgtat
ttgtccggtggcaaaaagtatcctttcgctacaccggatgCAATAaatcc
ggtgttgcatacagggaattttggacgccggacatttatgaaacaaaaaa
ttaagaaacataggacgcaccggactggtcatgtccggtgttttgattgt
ccggtgggaaaaaatatccttctccgacaccggacatccgactcccttaa
gtccggtgtagaaattgtccagtggtaaaaaaaattctcattttacaccg
gactttcgtgtgtccggtgttcgttaagtccggtgcgtcggcagggtcct
agtACTAGCACtacaggccatattttagaaaggcaaggcagcgttcgttg
gtggccaaaaagggcactttttcttatgtttttccactaaaaaggctgtt
tttaacaaaattttagtaatttcaagagGGGCAGCGTCCAATAACCGGAC
gcttaaagggcatgaaaaatggcctgcaCTAGTAGGTTGAGTGATTTTTT
TAACCAGCTTATTCAGAATGTTTTATAAACATTTCaaagaccagatagtt
gctttgaaggaattagacaaggtacGTCGGCATCACACAAAGTTACAGAC
ATATCTATTTGGGGAGGACCCTCCCGGCCCTCCGGGAAACTTCCGGTGCT
TCCGGAGCGAGTGATTCTTAACACAGTTCCAGAGTTCCGGTGCAGACCAA
TTGCCGAAAATCGTGCTCTGGAACACCAGAAGTGCTTGGAGCACAAAAAA
ACAGCACTTTTTGCTCCAGACGTTTCCAGAGCGCCGAGAGGGTCCTATTT
AGGGACGTACAGCAGGATATCGATACATCAGTATTGACCTTTTTTAGATC
AGTACATCAGTATAgggagaaaaaaatccgtaATTGGTATTTCTGGAGCA
TCACTGTATTGGTAAAAGACCCTTTTTATGTCagtatttcaatatttttg
gtcaGCTATCAGTATCATGTGGAATTATTCAAGAAATCAAGTTttcatca
ttgaaatttttaaaagaaacaaGGGGAAGGGAGTCTAAGAAATCTGAATA
TAAATGTTggttcaaaatattgaaatcgaTCAGTAttggtaccgtcaact
gctccaactggggacgagtgtacgcaacatgggacttgttgatatatata
tatatggcctgtattttcacttaagGTTAAATccctttgacaacaaattt
gttttgataactccaccaagtttatcaatcatactttctgtcataacatg
tcacgataactttcactgatagcgcgccctttttaacttttgttttcatt
taaaatgaccagACGCcaaatggagaattagagaacgcctaCCGCCCGAT
GagattaacaaatagcgagtCTGTAACTTGTCGCGCGAGTGATGTCAAAC
GCTCACATTCgcatgtgttccactacggatttttttcatatttcgattta
aaagcctactcggtgcaaaagagaaattgtgtattttttaatacgcggtt
catttaactgaaatcaaatgactttggaggttcggtgaaatggtggtgga
atggccgtcccatgttccgtaagatagtcccaagtttgAGCAGTTGGCGG
TATATCAGTAATTGGGGAAAAAAGATCGGtatataccgtaacttggtcta
atgtcgacatcattcctctaattccgacaccctttttatcaggggccgtc
cacatagtacgtacgtaCTAAATCGTTTGGTTCAGACCTtcatttcatac
atgaaactcaatgtttattaagaaactttttcttttccttgatgccaACA
AAAGTCAACAagtcaacaaaaaaaacaagcaaaaaagggctatgaaaaaa
tCTCTCTGcatacgtacattttcctttgacccctcccctccccctgtacg
caaacatacacttttgagaagaccccctcccctctttagtgcgtacgtac
tatgtggacggaccccagctgaaattgatagaaaggttgaaactgttttt
ctttgcttagtggtcagagaggaatactcctttttcaatcagtcaTTCAA
GCTTTCAtgttattcctgtctctaaagaatggtgtcgatattagaccaat
tTGCGGTAGGTATTCCCATACTCCCGTACTCCCCCACTAGTTgccaattt
ttaaatttctgaaTGAGAGACAAGGTGCGAGCGCAAAATTGAGTTAGGGA
TTTTTAATGGGTATTCGCTCTGAGCGAATTGCTCTGGTGAGATTCCCTTA
AAAAGTATGCAAAagatatgcaaaaagaaagtattgatataaaatttaca
tgcataattggcattatattaaagtgtaatcttgtagaagatagattaaa
tttgcttctcttgaaaactaaaaataattatattcgctcatctcctagaa
caagcacttcaaaaaaccataaattggacataaactcaagctgaaaaatc
accagcgaaggtacaaaaataatccttattcggctgacggtaaattattc
tcctgggaatagaaccgccaaatgatcaaTTTATTGATCTGAACCCCTGA
TTTACAGCGGCTTTTACTAATGTGTTGGGTTTGACCTTGTATATCTAAAC
AGGGGTTTTAATATTTCTTGCACGGGTaagaatgtgtgacgtcataatta
ctgctttcagtttgtgtattttgaaagtttgatttgtgtactccgtcttt
gtggaattttttaatggcatgaaaacagaatatgcttcAATGTCtttaaa
gaacaaatataatatttctttttggattaagaaattccatgttttattta
ttgttctaatgattataataatatttatttataagatgctttgttgtctt
tttaatctttgtgtaaacttgcgaCCCCGTCTCTTTTGCTTTGGGGTTTC
ATAAGAGTGTCTCTTAtgttttgctagcaacttgcgaattgaggtggagt
ctggatggcttcgcaacccttatacaatacggctggtatcaccatctgaa
gtattcttatgTTTTTATGTGCTACCAGACCTCACTAGGAAATTGTTTTA
TATAGGACAGTCAAAGGAATGGGCGAAACTTTACTCTTGGtgaaaaaact
taatttttggaTGTATTATTCAAAGTGTTACCTTTAAACCCAAGTTTAAT
TTAACATCacattcttttttgaatttttatgaaaatatcaGAAGGGTATT
TATATTTCGGTTTTTGCTGCAACTTTACTGATTTTTATAGAAAGGAGCTC
TCAATTTAGCAAATTCTGCAAAAAGAGTATAAGCAGACCAACAATTGACT
CAAAAAGTTTGTCTTAGGGGAGACTTTATCTTGTTACAACACCCTTTCTA
CTGGAAAATTacttttaacatattttttttggCTATAACTATACAGCACT
GTCATGTATTTtactgattttacaaaatggtCCATAACACTATTTTCAAA
TTCACTTATTGTTTCACTTATGACTTGTTTCACTTGTCCCCACTTGAGAC
AAAAACAGGGGACAAACTTTGTAATCCTtaacttcttttcctttttaACT
TTCTTGTCTTTTATCATCTTCAAGTGATCTGTCTTCATTCTTCCCCCATT
GTTTGTGTTACATAAGACCATAATAAAAGATCTTGTTTAAGATGTTTTAA
CAATTTCtatatttgtttttatgaaTATTTTGTACTGACTTTTTGTTTCT
GAGCTTTCCTATATCTTGTTTTCAAACTAAATATTCAGAAGGATCagtgt
tttaaattttgtttgagaaaaattggttttataactttttgattttccaa
TGACAACAAATTTTGTCCTGCCAATGAATGGGATTTTTGACTCTAACTCA
TCCAAGGGGTCTTGTGACAAATCTCAAGGCCTTTCCTGGCCTTTCATTGG
TATTGATTGCTCTAAGTGGTTACAAAATTGACAGAAACTCAACTTCTAAT
CTGAAAAATGGCCAGTGGCAAAAgtgcttgttttgatttttgatttttaa
gtacatctatccgcagacacgtgtttcgtccttcccaggaGTCATCAGTG
CGGCTTGGGTAAGCAAGCATAGACTGATGTTGTTACCAGAGTGATTTTTA
AAGTACTACAGTAATGCAGTTTACATAAGCTTGCAtccttttaaaatcaa
ttttttttatttttcagagatTACTATTGTTTTTATACTACTGACACATA
CAATAAATTGTAACCATGGGGAAGAtgctatcaaaaatctttggtAACAA
AGAGATGAGGATATTGATGCTTGGTCTCGATGCTGCAGGAAAAACTAGTA
AGCCTCATTCTTCTACATTTCCATAACAGCAGATCATCAACACTCTTAAA
AGTGACTGTCATTGAGCTCTACTCCGCCCTTCTAGAGTACATATGTCCTG
AAAAGTGGATGTGCTTTTAGTATAATGAAAGTTATGTATAAGATGAGGCC
TTTTTCAACAACCTCTATCTTACATATACATCTTATTATTCATTTTCAta
tactttgaaaaaaaatcattttaaaagttgTCCTGACAGGTttattccaa
attttttttgctttataagTATTAAATCACCCTTTTGTTATTTTATAGCT
ATATTATACAAATTGAAATTGGGACAGTCAGTGACAACNACCCTATTGTT
ATTTTATAGCTATATTATACAAATTGAAATTGGGACAGTCAGTGACAACA
ATACCAACTGTAGGATTTAACGTAGAAACAGTTACatataaaaatgtcaa
attcaacGTCTGGGTAAGATCTAGTTTTTTAGTCATAACATGTAGATATA
ACCTGTATTGATGGTAATCTAAACATAAAGTAAAATGAAGAGCGAATAAA
GCTTGTTTTCTGTCTTAACAAGTAATGATGTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053108-exon-scaffold_226-1491911889:157735..157811 | TCONS_00053108-exon-scaffold_226-1491911889:157735..157811 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1510915933:157735..157811 | TCONS_00053108-exon-scaffold_226-1510915933:157735..157811 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1575043694:157735..157811 | TCONS_00053108-exon-scaffold_226-1575043694:157735..157811 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1491911889:165852..165981 | TCONS_00053108-exon-scaffold_226-1491911889:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1510915933:165852..165981 | TCONS_00053108-exon-scaffold_226-1510915933:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1575043694:165852..165981 | TCONS_00053108-exon-scaffold_226-1575043694:165852..165981 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1491911889:166344..166571 | TCONS_00053108-exon-scaffold_226-1491911889:166344..166571 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1510915933:166344..166571 | TCONS_00053108-exon-scaffold_226-1510915933:166344..166571 | Clytia hemisphaerica | exon |
| TCONS_00053108-exon-scaffold_226-1575043694:166344..166571 | TCONS_00053108-exon-scaffold_226-1575043694:166344..166571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:157735..166571 + |
Blast
BLAST of TCONS_00053108 vs. Swiss-Prot (Human)
Match: ARF6 (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 9.516e-36 Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 3
Query: 126 MGKMLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 311
MGK+LSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW
Sbjct: 1 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
The following BLAST results are available for this feature:
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