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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053103 ID=TCONS_00053103|Name=TCONS_00053103|organism=Clytia hemisphaerica|type=transcript|length=1704bp
CGAAACATGAGAACACGTGATTCGAAAAAAAGTAGATTGATGACATTATT
AATCCGTTGAAACAAAGTCCACTTAAGCGTTGTGAGGTGGAAGACTTAGT
TCTTTTGGAAGACAATTTGTCAAAGGTTGTAGAAGGACTGTCGAGATAAT
CAGAAATGGAGCGAGTTATTATTTTCTTGGCTTTAATTGGTCTTGCATCT
TCTATGTCAATCAAATTCAATCCATGCGAGAGTTCAAGAGGTAAGTCAAC
AGCAAGCAACATCTCACTCATTATCGAACCATGCACGGCTGAACCATGTA
AATTAATCAAAGGACAATCTTCAAGTATCGCTGTACACTTCACACCTGCA
AATGTTGCTAAAACATTAGCCGTATCTGTTCACGCTAAAATCGCTTCTTT
CTGGGTTCCCTACAGTATTGATAAACCAGACGCATGTAAGGATTCAGGCT
TGACTTGTCCATTGGCTGCTGGAACAGAGGCTGATTATGAATACTCATTG
AAAGTCTCCACAGCCTACCCAAGTATCTCCTTACCATTGGAATGGAAAAT
TACGGACGATACCGGAGCATCACCCGTCTGCGTTGTCTTCCCTATCGTGG
TCACATCCTCTGCTGCGTCCATGTACGAAGAAGAATCTCTCGCACTCATT
CCCTAGATAATTGTTTTATAATAgaaaatacagttgacactctctaattc
aacGTTTTACTATTCGATATGCCCCAAAAATATGCTCTCTTATTTaataa
tattgaaagccaccgtcaacaagaaactctgaTAACGACGCACACATCCT
CTTCTGCGTCCATGTATGAAGAAGAATCTCTCGCACTCATTCCCTATATA
ATGTTTCTATCATAgaaaatacagttgacactctctaattcaacGTTTTA
CTATTCGATATGCCTtaaaaatatggtataatatcagggttggtcaaatc
aaatttttcagaaaatgagcaagAATGCTAAGCAATCCCAGGGCGGACCC
AAAAATTGTGTTGtcaataatattgaaagtcaatGTTGACAATAAACttt
cataaacgacgctctactattcaatacgctctcttattcgataatattga
agtCACCGTCAATAAGAAACTCTGATAACAACGCTCTTCCACTCGATGAA
AACCTAATCCCCATTGAAAATCGGATTAGAGAACGTCAACTGCACTTTTA
CTTAACTCTTTCATTGTATCAACTTTACTTACTATTAATGAATCAAGCCA
TGGCTTAATGAGGTAGTACAGTATAATGTATCgagaacttttttcatatt
ttccaatagtttataatttttgtacaatttttacGAACTAGCAATAAAAA
CGATAATATAATgtacaatttttaaatacttcaatggaaagaaaaatttc
ttcatcAATAGACTGGCACTCCAGTCGGGCTAGAatggtatcacgcggga
aaagtgagcgtaggagttaggtaaacGTAAGAAGTAATTTTGTCGGAAAg
ctaatcagcagcctctcgccaacttttgctcgttctccaacgcagctcct
attctaacaaacgcccgccgcctttatgttcccgccctctgacatgatta
attaacagactagttttcTAGTCTATGTCTTCAATGGTAATCTTCAATGG
CAAATAATTGGACAATTCTCAGTTCCACATCCaaagtcaaattttcaatt
acCC Run BLAST on NCBI transcript from alignment at scaffold_226:128054..135034+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053103 ID=TCONS_00053103|Name=TCONS_00053103|organism=Clytia hemisphaerica|type=transcript|length=6981bp|location=Sequence derived from alignment at scaffold_226:128054..135034+ (Clytia hemisphaerica)
CGAAACATGAGAACACGTGATTCGAAAAAAAGTAGATTGATGACATTATT
AATCCGTTGAAACAAAGTCCACTTAAGCGTTGTGAGGTGGAAGACTTAGT
TCTTTTGGAAGACAATTTGTCAAAGGTTGTAGAAGGACTGTCGAGATAAT
CAGAAATGGAGCGAGTTATTATTTTCTTGGCTTTAATTGGTCTTGCATCT
TCTATGTCAATCAAATTCAATCCATGCGAGAGTTCAAGAGGTGAGCATAA
CATTTTGACTATTTTGTTTAGCCTTtaacattagttttttctatcatttt
tctgcgggaaatcttttttatttttggcccAGAATCAAACCAGACATTTC
TATCAAAACAGCAATTGTACCTTATACGATTTGCTATACAACCCTGCGTC
ACAGACcagctgggaccccagccccactgggaaatttggcaaaaagttcg
tacccggtgggaaaataccttagaaTTTCGTTCAAttcctaacatgttct
tattttcaccattttgtgagtatttttgtccccTTTTCCTAAAAAATCCA
GTATTTTAGaatcaaaaccttaaaatgttcctaacttgttcttaacattt
tagccatcgaagccttatgttcttatatagttcgtTCTTCTAAAAACGTG
TAATAATGATGACGAACGAAGAAACTGCTTTGAGAAGGTCTATCAAGATT
TTGATCTACTATTAAATCATTATAAGTCCAAATATTTAAAGGTTAACTAA
CTTTCAGTCGATCTTATCTCTGAAAACTGAGACTTTGAAAACTTCTTAAC
TTTATTAAAGTTTACATATAAAGTAATTGAAGTGTCAACTTTATTGTATG
TCGTCACATCacacgttttttcttataagaacaaactatataagaacata
cggcttcggtggccaaaatcttaagaacaagtcaagaacattataaggct
ttgtgtactcaaaaacaccctatttcttaggaaaatggtcaaaagtatcc
acaaaatggtcaagataaaagcatgttaagaacatccgaaggtttcaaaa
attttggatattcatataaaaataaaagcGTGTATCTTATAAATATGCAA
AATCTATCagtgaaagtaaacaaagttttTCATTGTTACTTCCTTCTTTA
AATtcaaataaaccagccgaggctagaaggtcagccaatagagcttagct
agatagctttaataagtgggttaacagatgtaagagatgtactgaaacag
agtagaccaaaaatgttgaataatgtNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgta
aaaactgactgctattcagtcaaagccataatttggcaaggtcagaaaaa
cataatttacatccagtcttcgtaaataaattttgtagtttagtaccgtc
aaattacacaacatgcacacaaccatcttgaagactttgctgatcgcaaa
tgataatcgaaagcaaaatttaaaatacatAACTATtcagggaagctcat
ttttcccccattttgctttaaactcccttttgattggtctatgaatttgg
gcgatcgctttaccgccttgaCAGAATAAACNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNgtgccaagcactggcagtgttttttaaacttt
aaaacaatgttaaatgaagaccagatggatatgtttgttatgactgtgca
gGTTGTGACgtgagtgtgcatgttgtgtaactcaAGTGATGTATGTATCA
GTGCaatgtatttaaattttaagtttcgtgacgtaatgttacgtaatgtt
tatgacgtcataatacaggtttttgggctataacttcttatagcctcaag
ttaaatttttctaacacccatcacgttgatctacatcatatggcgcttct
ttccagctatgtttgaaaatttgaaagggagtggaactggttcactttta
ccttagacatgccgtaactcacttgagaacttgacggtataattcattaa
attctagaaaccatttttcataactttctgcagtccactttctgcaagtc
tgataagagatatgtataaaaagttatcgccattcattccattccatcat
tcagtcaaaacgtgcgccaaggttacaaaaggttagaaaaacacaatctg
cgtccggaactgcgtgaaaaatagttagatcaatttcaacaagcaGACAA
GAACTGCAACAtacattaatattaatataattgatcaaatttcaaagacc
atttgtcataattttgcaagtccaataataggagatgtgatgtcatcatt
tggttcccgtcctgtcccgtcatctgaccgaccctgatttacggtcagca
ggtagagttggagagtcggaaagcttttccgctgctttgctggatttcca
atgtcgacctctgcacgctctgtgtttacaagtttNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNcgctctgtgtttacaagttttcaaat
cgaagtagcgagccgcatgctaatggagagtaaaccgaaaaccagtttat
ccacggtttctcaatttcttaattcggataagtccacacggattcccttt
caacaagatgtatagctgcttcttaaaagaaaaatattttcgaccgatcg
accgaccgaccgaccgaatgacccccactttaaaaaaaaaatgacgggaa
tcaaataattttttgcgattcgccttatcaaacacttccaaaccaagtcc
aaaaaagcacgattgcatccaggctctatcaaatttagacagtagctgta
cttttgtaaactttatcaaattccaataacattataacaccatcaatccc
acctagaggaaacaagaaaaatatgtttttattgcaaaaactaataaaaa
gcagcaataaaatgtatcagaaaatttaacataaacaaaaacttgagcaa
acggctttaaaccttcaaaagatgtagaaaaagaatccccttgatgaaaa
tcatgtgtttgatttgccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACCAAAGC
AAGATCTATAAAAACTTTTCAATCTAATTTGCAGGTAAGTCAACAGCAAG
CAACATCTCACTCATTATCGAACCATGCACGGCTGAACCATGTAAATTAA
TCAAAGGACAATCTTCAAGTATCGCTGTACACTTCACACCTGCAAATGTT
GCTAAAACATTAGCCGTATCTGTTCACGCTAAAATCGCTTCTTTCTGGGT
TCCCTACAGTATTGATAAACCAGACGCATGTAAGGATTCAGGCTTGACTT
GTCCATTGGCTGCTGGAACAGAGGCTGATTATGAATACTCATTGAAAGTC
TCCACAGCCTACCCAAGTGTAAGTTTGATTCAAAAATATCATATTCCTTT
ACACACTATATAGGTATGTTAACTGCTCACAGACTGTGCTTTCCCGTGAA
AGTCCAAATTAAAAGTCGACTAGTCCGCCATGCTGTTCCTTGTTTCATTA
GATTTTCGagctttcaaatttcaaaaaattcgaaTGATCTCACTGTTGAC
AAACAGAACAGAATACAAATTAAAAGAGGAATTaaaagagggatgtcgac
attagaccaacttaccaTAGCTAATAGAGAAAGAGTATTTCAcggtcaaa
aaaatttgaaacgaTTGcatcgcgggaattaatttttgcggtNCGTGGAA
AATTTTatctatttgaatgctcagcttaggctgaccaaaaagctatctaa
aaaattgaaaaatttgaaaaatcgcACGCCTAGTATTGATTCGTTTTTTG
CGCGCACTTGTGAATGGAAAAAGAGTGAATAAGTCATGCCCCGTACctca
tttttgcctaagttcAACAACAAAGTACAACACGGGCGTGGCCGGGCCGG
ATAGGGTTTTATGTTATAGTAACTACCTCCATTTTTGATTATAGTTTAAA
CCTCCACAATACTCTATAGAGCCTTCCGAGAAAAAATTGACCAAGGGAAC
TCGGAAAATAACATGCTTAAAAGCCTTGAGCTGTCTATTGTATAGAGATA
CCAAAGCAAGATCTATAAAAACTTTTCAATCTAATTTGCAGGTAAGTCAA
CAGCAAGCAACATCTCACTCATTATCGAACCATGCACGGCTGAACCATGT
AAATTAATCAAAGGACAATCTTCAAGTATCGCTGTACACTTCACACCTGC
AAATGTTGCTAAAACATTAGCCGTATCTGTTCACGCTAAAATCGCTTCTT
TCTGGGTTCCCTACAGTATTGATAAACCAGACGCATGTAAGGATTCAGGC
TTGACTTGTCCATTGGCTGCTGGAACAGAGGCTGATTATGAATACTCATT
GAAAGTCTCCACAGCCTACCCAAGTGTAAGTTTGATTCAAAAATATCATA
TTCCTTTACACACTATATAGGTATGTTAACTGCTCACAGACTGTGCTTTC
CCGTGAAAGTCCAAATTAAAAGTCGACTAGTCCGCCATGCTGTTCCTTGT
TTCATTAGATTTTCGagctttcaaatttcaaaaaattcgaaTGATCTCAC
TGTTGACAAACAGAACAGAATACAAATTAAAAGAGGAATTaaaagaggga
tgtcgacattagaccaacttaccaTAGCTAATAGAGAAAGAGTATTTCAc
ggtcaaaaaaatttgaaacgaTTGcatcgcgggaattaatttttgcggtt
ttgtcCTATTTTGGAAACATTTCTTTCATGTcagattcttcaaatttctt
tatGAATGGtgtcaaaacttgtaatttGCAGGTTCTAAAAATTAGTTCAC
TTAAGTTATTATGCATCACATTTAACTTTCTACAATTTATATTTCATATA
GATCTCCTTACCATTGGAATGGAAAATTACGGACGATACCGGAGCATCAC
CCGTCTGCGTTGTCTTCCCTATCGTGGTCACATCCTCTGCTGCGTCCATG
TACGAAGAAGAATCTCTCGCACTCATTCCCTAGATAATTGTTTTATAATA
gaaaatacagttgacactctctaattcaacGTTTTACTATTCGATATGCC
CCAAAAATATGCTCTCTTATTTaataatattgaaagccaccgtcaacaag
aaactctgaTAACGACGCACACATCCTCTTCTGCGTCCATGTATGAAGAA
GAATCTCTCGCACTCATTCCCTATATAATGTTTCTATCATAgaaaataca
gttgacactctctaattcaacGTTTTACTATTCGATATGCCTtaaaaata
tggtataatatcagggttggtcaaatcaaatttttcagaaaatgagcaag
AATGCTAAGCAATCCCAGGGCGGACCCAAAAATTGTGTTGtcaataatat
tgaaagtcaatGTTGACAATAAACtttcataaacgacgctctactattca
atacgctctcttattcgataatattgaagtCACCGTCAATAAGAAACTCT
GATAACAACGCTCTTCCACTCGATGAAAACCTAATCCCCATTGAAAATCG
GATTAGAGAACGTCAACTGCACTTTTACTTAACTCTTTCATTGTATCAAC
TTTACTTACTATTAATGAATCAAGCCATGGCTTAATGAGGTAGTACAGTA
TAATGTATCgagaacttttttcatattttccaatagtttataatttttgt
acaatttttacGAACTAGCAATAAAAACGATAATATAATgtacaattttt
aaatacttcaatggaaagaaaaatttcttcatcAATAGACTGGCACTCCA
GTCGGGCTAGAatggtatcacgcgggaaaagtgagcgtaggagttaggta
aacGTAAGAAGTAATTTTGTCGGAAAgctaatcagcagcctctcgccaac
ttttgctcgttctccaacgcagctcctattctaacaaacgcccgccgcct
ttatgttcccgccctctgacatgattaattaacagactagttttcTAGTC
TATGTCTTCAATGGTAATCTTCAATGGCAAATAATTGGACAATTCTCAGT
TCCACATCCaaagtcaaattttcaattacCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053103-exon-scaffold_226-1491911889:128054..128293 | TCONS_00053103-exon-scaffold_226-1491911889:128054..128293 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1510915933:128054..128293 | TCONS_00053103-exon-scaffold_226-1510915933:128054..128293 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1575043694:128054..128293 | TCONS_00053103-exon-scaffold_226-1575043694:128054..128293 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1491911889:133095..133378 | TCONS_00053103-exon-scaffold_226-1491911889:133095..133378 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1510915933:133095..133378 | TCONS_00053103-exon-scaffold_226-1510915933:133095..133378 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1575043694:133095..133378 | TCONS_00053103-exon-scaffold_226-1575043694:133095..133378 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1491911889:133855..135034 | TCONS_00053103-exon-scaffold_226-1491911889:133855..135034 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1510915933:133855..135034 | TCONS_00053103-exon-scaffold_226-1510915933:133855..135034 | Clytia hemisphaerica | exon |
| TCONS_00053103-exon-scaffold_226-1575043694:133855..135034 | TCONS_00053103-exon-scaffold_226-1575043694:133855..135034 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_226 | supercontig | scaffold_226:128054..135034 + |
Blast
BLAST of TCONS_00053103 vs. Swiss-Prot (Human)
Match: NPC2 (Epididymal secretory protein E1 OS=Homo sapiens GN=NPC2 PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.057e-19 Identity = 50/138 (36.23%), Postives = 70/138 (50.72%), Query Frame = 3
Query: 195 ASSMSIKFNPCESSRGKSTASNISLIIEPCTAEPCKLIKGQSSSIAVHFTPANVAKTLAVSVHAKIASFWVPYSIDKPDACKDSGLTCPLAAGTEADYEYSLKVSTAYPSISLPLEWKITDDTGASPVCVVFPIVVTS 608
A + ++F C S G N+S PC +PC+L KGQS S+ V FT +K+ VH + VP+ I +PD CK SG+ CP+ Y L V + YPSI L +EW++ DD S C P+ + S
Sbjct: 17 AQAEPVQFKDCGSVDGVIKEVNVS----PCPTQPCQLSKGQSYSVNVTFTSNIQSKSSKAVVHGILMGVPVPFPIPEPDGCK-SGINCPIQKDKTYSYLNKLPVKSEYPSIKLVVEWQLQDDKNQSLFCWEIPVQIVS 149
The following BLAST results are available for this feature:
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