TCONS_00053093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053093
Unique NameTCONS_00053093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053093 ID=TCONS_00053093|Name=TCONS_00053093|organism=Clytia hemisphaerica|type=transcript|length=1672bp
gtgccactaactcgatcgggaagattcttccaaaattggaagattcttcc
gaaatgggaagaatcctcccgaacgggaaattaacttAACACCCAAACGG
GTTGACGGACTTCCAGATCGGGAAGAAGCGAGAAACTAAGGAAAACTCGA
TCGGGTTGGaacttcccgtttgggaagtttatgcagttttttcacaattt
aacaagatttctacggtaaagtctacttttctttcggtgaaaaaCCTTAG
AATTTGATGCTTCTTCatctccaaaaagtttcaactttcgccggtcatcg
tacagcttcgccgaaattcagtcaattttcaacttcccaaagaggaagaa
tcttccaaaacgggcagaaaaaaatagagtaagttcttcccgttcgggaa
ggttcttcccatttcggaagaatcttcccgatcgagttagtggcacagac
tgattagtattacatgcattataaacgactccagtctacgtttgttcctc
ttagatgaaactcgtcttagactatccCGTCTTTCTAAATGAGGAGCTAA
TTTTAAGGCAACACTTTTGCTTGCCTACGAAAGATAAAAGATTCGTCTCA
ACTTTCGGGTCGAAACTCAATGGGGGCTGTCTTGGTAATCAAAAGGACTT
TAATAATATTGGTAATCACGAAGACAATAATGAAGTGAAGAGACATTTAA
TTAATTCTTTGTTTATCATGGTTTTGTTTTGGCATTTTTTTGGTCCGTAC
AAAAATAATAAAGGATGGTTTTACAATTTTCTCCTTACTTATCAGAATAA
TACTTCATGGTAAATCTTTAAATACCTCACACACTCTCACAATAAACTTA
TCTTAAAATACTCCCTCTCCCTCTCTCTGCTTTGTACATTAAAAAGTTGC
GGTGATAAACGATAACAGGCCACTGTCAAAAAAGACATTTATTTTTGTTG
GTTTGAAAAAGACAAGTTATTGgcattttgtgttggaaatTTTACGTGAT
TGAAACTACTATTTCAAGTGCACAATATTTATGTTGGTCGATAATATGTC
AGTCTAAAGTAGCTCATGCTATGGTTGACAGACCTGACTCTTTAAAATTG
AACCTTTGTAAAAAAAGTTCTTGCTATACTTAAAGTTTATAGTAAAGCAT
TACTTACTTTAAATAAATATGAAACTGataaaataatgttttcatcttaa
aatatAAATGGATATAAATAAGGAGAAAACAGAATGAAGAGCAGTGCGAA
ACGGAAAAGAAGAGCTTTaagcaaaataagatttgtcagTGATTAGGTTT
TCCAGCCCATAGataagaaattgaaattgaagatCTGATTTCGAAGGgca
taacaaaaaaataaaaatatttataaaaacaataaaatcgtAAAATCAGG
TATATAATcaattaagtaaaatttttgaaatgatttaaTCCACAGGTAAA
AGGAGCAGAACGAAAAGAAACGAGTGAAGGAAGAAATATTACTTGCTGAA
ATAAGTGAAAGATGAATAATTCGTTACATTACATGCTGCGGAGGAAGCGC
TTACATTATGGTGACTAGCCNAAGGTAAAAGGAGCAGAACGAAAAGAAAC
AAGTGAAGGAAGAAATATTACTTGCTGAAATAAGTGAAAGATGAATAATT
CGTTACATTACATGCTGCGGAG
Run BLAST on NCBI

transcript from alignment at scaffold_225:262743..264414

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053093 ID=TCONS_00053093|Name=TCONS_00053093|organism=Clytia hemisphaerica|type=transcript|length=1672bp|location=Sequence derived from alignment at scaffold_225:262743..264414 (Clytia hemisphaerica)
CTCCGCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCAGCA AGTAATATTTCTTCCTTCACTTGTTTCTTTTCGTTCTGCTCCTTTTACCT TNGGCTAGTCACCATAATGTAAGCGCTTCCTCCGCAGCATGTAATGTAAC GAATTATTCATCTTTCACTTATTTCAGCAAGTAATATTTCTTCCTTCACT CGTTTCTTTTCGTTCTGCTCCTTTTACCTGTGGAttaaatcatttcaaaa attttacttaattgATTATATACCTGATTTTacgattttattgtttttat aaatatttttatttttttgttatgcCCTTCGAAATCAGatcttcaatttc aatttcttatCTATGGGCTGGAAAACCTAATCActgacaaatcttatttt gcttAAAGCTCTTCTTTTCCGTTTCGCACTGCTCTTCATTCTGTTTTCTC CTTATTTATATCCATTTatattttaagatgaaaacattattttatCAGTT TCATATTTATTTAAAGTAAGTAATGCTTTACTATAAACTTTAAGTATAGC AAGAACTTTTTTTACAAAGGTTCAATTTTAAAGAGTCAGGTCTGTCAACC ATAGCATGAGCTACTTTAGACTGACATATTATCGACCAACATAAATATTG TGCACTTGAAATAGTAGTTTCAATCACGTAAAatttccaacacaaaatgc CAATAACTTGTCTTTTTCAAACCAACAAAAATAAATGTCTTTTTTGACAG TGGCCTGTTATCGTTTATCACCGCAACTTTTTAATGTACAAAGCAGAGAG AGGGAGAGGGAGTATTTTAAGATAAGTTTATTGTGAGAGTGTGTGAGGTA TTTAAAGATTTACCATGAAGTATTATTCTGATAAGTAAGGAGAAAATTGT AAAACCATCCTTTATTATTTTTGTACGGACCAAAAAAATGCCAAAACAAA ACCATGATAAACAAAGAATTAATTAAATGTCTCTTCACTTCATTATTGTC TTCGTGATTACCAATATTATTAAAGTCCTTTTGATTACCAAGACAGCCCC CATTGAGTTTCGACCCGAAAGTTGAGACGAATCTTTTATCTTTCGTAGGC AAGCAAAAGTGTTGCCTTAAAATTAGCTCCTCATTTAGAAAGACGggata gtctaagacgagtttcatctaagaggaacaaacgtagactggagtcgttt ataatgcatgtaatactaatcagtctgtgccactaactcgatcgggaaga ttcttccgaaatgggaagaaccttcccgaacgggaagaacttactctatt tttttctgcccgttttggaagattcttcctctttgggaagttgaaaattg actgaatttcggcgaagctgtacgatgaccggcgaaagttgaaacttttt ggagatGAAGAAGCATCAAATTCTAAGGtttttcaccgaaagaaaagtag actttaccgtagaaatcttgttaaattgtgaaaaaactgcataaacttcc caaacgggaagttCCAACCCGATCGAGTTTTCCTTAGTTTCTCGCTTCTT CCCGATCTGGAAGTCCGTCAACCCGTTTGGGTGTTaagttaatttcccgt tcgggaggattcttcccatttcggaagaatcttccaattttggaagaatc ttcccgatcgagttagtggcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033535XLOC_033535Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053093-exon-scaffold_225-1491911889:262743..264414TCONS_00053093-exon-scaffold_225-1491911889:262743..264414Clytia hemisphaericaexon
TCONS_00053093-exon-scaffold_225-1510915933:262743..264414TCONS_00053093-exon-scaffold_225-1510915933:262743..264414Clytia hemisphaericaexon
TCONS_00053093-exon-scaffold_225-1575043694:262743..264414TCONS_00053093-exon-scaffold_225-1575043694:262743..264414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:262743..264414 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.660235 0.56659 0.539691 0.543638 4.25312 2.24407 3.00756 3.82432 3.8885 3.2593 4.1813 4.03468 3.45103 4.26141 2.13889 1.99506 3.0996 2.92183 3.75597 4.77056 11.0128 11.255 4.29519 5.44207 3.09436 3.91507 8.14634 11.2544 4.98057 4.18756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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