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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053093 ID=TCONS_00053093|Name=TCONS_00053093|organism=Clytia hemisphaerica|type=transcript|length=1672bp
gtgccactaactcgatcgggaagattcttccaaaattggaagattcttcc
gaaatgggaagaatcctcccgaacgggaaattaacttAACACCCAAACGG
GTTGACGGACTTCCAGATCGGGAAGAAGCGAGAAACTAAGGAAAACTCGA
TCGGGTTGGaacttcccgtttgggaagtttatgcagttttttcacaattt
aacaagatttctacggtaaagtctacttttctttcggtgaaaaaCCTTAG
AATTTGATGCTTCTTCatctccaaaaagtttcaactttcgccggtcatcg
tacagcttcgccgaaattcagtcaattttcaacttcccaaagaggaagaa
tcttccaaaacgggcagaaaaaaatagagtaagttcttcccgttcgggaa
ggttcttcccatttcggaagaatcttcccgatcgagttagtggcacagac
tgattagtattacatgcattataaacgactccagtctacgtttgttcctc
ttagatgaaactcgtcttagactatccCGTCTTTCTAAATGAGGAGCTAA
TTTTAAGGCAACACTTTTGCTTGCCTACGAAAGATAAAAGATTCGTCTCA
ACTTTCGGGTCGAAACTCAATGGGGGCTGTCTTGGTAATCAAAAGGACTT
TAATAATATTGGTAATCACGAAGACAATAATGAAGTGAAGAGACATTTAA
TTAATTCTTTGTTTATCATGGTTTTGTTTTGGCATTTTTTTGGTCCGTAC
AAAAATAATAAAGGATGGTTTTACAATTTTCTCCTTACTTATCAGAATAA
TACTTCATGGTAAATCTTTAAATACCTCACACACTCTCACAATAAACTTA
TCTTAAAATACTCCCTCTCCCTCTCTCTGCTTTGTACATTAAAAAGTTGC
GGTGATAAACGATAACAGGCCACTGTCAAAAAAGACATTTATTTTTGTTG
GTTTGAAAAAGACAAGTTATTGgcattttgtgttggaaatTTTACGTGAT
TGAAACTACTATTTCAAGTGCACAATATTTATGTTGGTCGATAATATGTC
AGTCTAAAGTAGCTCATGCTATGGTTGACAGACCTGACTCTTTAAAATTG
AACCTTTGTAAAAAAAGTTCTTGCTATACTTAAAGTTTATAGTAAAGCAT
TACTTACTTTAAATAAATATGAAACTGataaaataatgttttcatcttaa
aatatAAATGGATATAAATAAGGAGAAAACAGAATGAAGAGCAGTGCGAA
ACGGAAAAGAAGAGCTTTaagcaaaataagatttgtcagTGATTAGGTTT
TCCAGCCCATAGataagaaattgaaattgaagatCTGATTTCGAAGGgca
taacaaaaaaataaaaatatttataaaaacaataaaatcgtAAAATCAGG
TATATAATcaattaagtaaaatttttgaaatgatttaaTCCACAGGTAAA
AGGAGCAGAACGAAAAGAAACGAGTGAAGGAAGAAATATTACTTGCTGAA
ATAAGTGAAAGATGAATAATTCGTTACATTACATGCTGCGGAGGAAGCGC
TTACATTATGGTGACTAGCCNAAGGTAAAAGGAGCAGAACGAAAAGAAAC
AAGTGAAGGAAGAAATATTACTTGCTGAAATAAGTGAAAGATGAATAATT
CGTTACATTACATGCTGCGGAG Run BLAST on NCBI transcript from alignment at scaffold_225:262743..264414 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053093 ID=TCONS_00053093|Name=TCONS_00053093|organism=Clytia hemisphaerica|type=transcript|length=1672bp|location=Sequence derived from alignment at scaffold_225:262743..264414 (Clytia hemisphaerica)
CTCCGCAGCATGTAATGTAACGAATTATTCATCTTTCACTTATTTCAGCA
AGTAATATTTCTTCCTTCACTTGTTTCTTTTCGTTCTGCTCCTTTTACCT
TNGGCTAGTCACCATAATGTAAGCGCTTCCTCCGCAGCATGTAATGTAAC
GAATTATTCATCTTTCACTTATTTCAGCAAGTAATATTTCTTCCTTCACT
CGTTTCTTTTCGTTCTGCTCCTTTTACCTGTGGAttaaatcatttcaaaa
attttacttaattgATTATATACCTGATTTTacgattttattgtttttat
aaatatttttatttttttgttatgcCCTTCGAAATCAGatcttcaatttc
aatttcttatCTATGGGCTGGAAAACCTAATCActgacaaatcttatttt
gcttAAAGCTCTTCTTTTCCGTTTCGCACTGCTCTTCATTCTGTTTTCTC
CTTATTTATATCCATTTatattttaagatgaaaacattattttatCAGTT
TCATATTTATTTAAAGTAAGTAATGCTTTACTATAAACTTTAAGTATAGC
AAGAACTTTTTTTACAAAGGTTCAATTTTAAAGAGTCAGGTCTGTCAACC
ATAGCATGAGCTACTTTAGACTGACATATTATCGACCAACATAAATATTG
TGCACTTGAAATAGTAGTTTCAATCACGTAAAatttccaacacaaaatgc
CAATAACTTGTCTTTTTCAAACCAACAAAAATAAATGTCTTTTTTGACAG
TGGCCTGTTATCGTTTATCACCGCAACTTTTTAATGTACAAAGCAGAGAG
AGGGAGAGGGAGTATTTTAAGATAAGTTTATTGTGAGAGTGTGTGAGGTA
TTTAAAGATTTACCATGAAGTATTATTCTGATAAGTAAGGAGAAAATTGT
AAAACCATCCTTTATTATTTTTGTACGGACCAAAAAAATGCCAAAACAAA
ACCATGATAAACAAAGAATTAATTAAATGTCTCTTCACTTCATTATTGTC
TTCGTGATTACCAATATTATTAAAGTCCTTTTGATTACCAAGACAGCCCC
CATTGAGTTTCGACCCGAAAGTTGAGACGAATCTTTTATCTTTCGTAGGC
AAGCAAAAGTGTTGCCTTAAAATTAGCTCCTCATTTAGAAAGACGggata
gtctaagacgagtttcatctaagaggaacaaacgtagactggagtcgttt
ataatgcatgtaatactaatcagtctgtgccactaactcgatcgggaaga
ttcttccgaaatgggaagaaccttcccgaacgggaagaacttactctatt
tttttctgcccgttttggaagattcttcctctttgggaagttgaaaattg
actgaatttcggcgaagctgtacgatgaccggcgaaagttgaaacttttt
ggagatGAAGAAGCATCAAATTCTAAGGtttttcaccgaaagaaaagtag
actttaccgtagaaatcttgttaaattgtgaaaaaactgcataaacttcc
caaacgggaagttCCAACCCGATCGAGTTTTCCTTAGTTTCTCGCTTCTT
CCCGATCTGGAAGTCCGTCAACCCGTTTGGGTGTTaagttaatttcccgt
tcgggaggattcttcccatttcggaagaatcttccaattttggaagaatc
ttcccgatcgagttagtggcac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053093-exon-scaffold_225-1491911889:262743..264414 | TCONS_00053093-exon-scaffold_225-1491911889:262743..264414 | Clytia hemisphaerica | exon |
| TCONS_00053093-exon-scaffold_225-1510915933:262743..264414 | TCONS_00053093-exon-scaffold_225-1510915933:262743..264414 | Clytia hemisphaerica | exon |
| TCONS_00053093-exon-scaffold_225-1575043694:262743..264414 | TCONS_00053093-exon-scaffold_225-1575043694:262743..264414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:262743..264414 . |
Blast
The following BLAST results are available for this feature:
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