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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053091 ID=TCONS_00053091|Name=TCONS_00053091|organism=Clytia hemisphaerica|type=transcript|length=997bp
cgacattagaccaacttacggtaccttTTATTTCAAGGTTAGggtatttt
tattatttttttggagcTAATTCTATCAGAAAATATGTGACGCAAAATGG
AATTGATGTAACGCTTGTTACATCAAAATACATCGACGTTTAGATGGAGA
AAGGTTACCAATCTTCAGTTGCAAGTCATAGAATGAAGACATCGTTGTTG
ACAAATccatattattttcaaaatacgtCATGTTAAGTTGACGAACATTC
TTGTCCGAAATACGTATGCTCAGAACATGTTCGACTTTGATCTGCTTAAG
TACTTGATATAATGTTCTACCTTCGTACTCGAAAATTTCAAGATGTTCAA
TTTCCAAAGCATATTGAAAATAAACTCGCaaatatacttttctttttaaa
taaattttagaaTGGGATTCTATAGAATAATGTTTGAGTTGATATTCATC
TTCTAGGAAAGTTCCATCTTCCTTTTCAAGATGTATAAATCTTGGGTTTT
TTAGCTCTTCTTTCATATGTTTACAGATAGTTTCTTTAATTTTACCAATA
GTACACGAATCTAAAGTAATCAGAGGAATGGTCGATTCATATTCAACGAT
TCTCGGTATAACTTGAATTTCCAGTGTCTTTTTATTGATTATTAGATTCA
AACATAATtcctttttgctttgtttttgtccAAGATCACGTATCATTTTT
AGATAAACAACATTGATTTGCCAATAATTTTCCAATTCCAAACCGTTGTA
AAGTATAACTTGTGCATGAAAATGTATCTTATATTCTTGTTGAATTCTCT
GCTTTACTTCAACTATATTAACAAAATCCTTGGAATTCAGTTCCATTTCT
TTAGTTAGAAATCTCAATTTGAACGTAAACCCATTTTCTAGATGTTTACT
TTTACAGGAACGGTCACAAAACCAATACTTACTATTGATAGATTTcgaac
aaaacagacaaatatTTTCCATCATATGATTTTGAACACTTCTTACT Run BLAST on NCBI protein sequence of TCONS_00053091-protein >TCONS_00053091-protein ID=TCONS_00053091-protein|Name=TCONS_00053091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
VRSVQNHMMENICLFCSKSINSKYWFCDRSCKSKHLENGFTFKLRFLTKE
MELNSKDFVNIVEVKQRIQQEYKIHFHAQVILYNGLELENYWQINVVYLK
MIRDLGQKQSKKELCLNLIINKKTLEIQVIPRIVEYESTIPLITLDSCTI
GKIKETICKHMKEELKNPRFIHLEKEDGTFLEDEYQLKHYSIESHSKIYL
KRKVYLRVYFQYALEIEHLEIFEYEGRTLYQVLKQIKVEHVLSIRISDKN
VRQLNMTYFENNMDLSTTMSSFYDLQLKIGNLSPSKRRCILM Run BLAST on NCBI transcript from alignment at scaffold_225:212300..213296 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053091 ID=TCONS_00053091|Name=TCONS_00053091|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at scaffold_225:212300..213296 (Clytia hemisphaerica)
AGTAAGAAGTGTTCAAAATCATATGATGGAAAatatttgtctgttttgtt
cgAAATCTATCAATAGTAAGTATTGGTTTTGTGACCGTTCCTGTAAAAGT
AAACATCTAGAAAATGGGTTTACGTTCAAATTGAGATTTCTAACTAAAGA
AATGGAACTGAATTCCAAGGATTTTGTTAATATAGTTGAAGTAAAGCAGA
GAATTCAACAAGAATATAAGATACATTTTCATGCACAAGTTATACTTTAC
AACGGTTTGGAATTGGAAAATTATTGGCAAATCAATGTTGTTTATCTAAA
AATGATACGTGATCTTggacaaaaacaaagcaaaaaggaATTATGTTTGA
ATCTAATAATCAATAAAAAGACACTGGAAATTCAAGTTATACCGAGAATC
GTTGAATATGAATCGACCATTCCTCTGATTACTTTAGATTCGTGTACTAT
TGGTAAAATTAAAGAAACTATCTGTAAACATATGAAAGAAGAGCTAAAAA
ACCCAAGATTTATACATCTTGAAAAGGAAGATGGAACTTTCCTAGAAGAT
GAATATCAACTCAAACATTATTCTATAGAATCCCAttctaaaatttattt
aaaaagaaaagtatatttGCGAGTTTATTTTCAATATGCTTTGGAAATTG
AACATCTTGAAATTTTCGAGTACGAAGGTAGAACATTATATCAAGTACTT
AAGCAGATCAAAGTCGAACATGTTCTGAGCATACGTATTTCGGACAAGAA
TGTTCGTCAACTTAACATGacgtattttgaaaataatatggATTTGTCAA
CAACGATGTCTTCATTCTATGACTTGCAACTGAAGATTGGTAACCTTTCT
CCATCTAAACGTCGATGTATTTTGATGTAACAAGCGTTACATCAATTCCA
TTTTGCGTCACATATTTTCTGATAGAATTAgctccaaaaaaataataaaa
ataccCTAACCTTGAAATAAaaggtaccgtaagttggtctaatgtcg Coding sequence (CDS) from alignment at scaffold_225:212300..213296 >TCONS_00053091 ID=TCONS_00053091|Name=TCONS_00053091|organism=Clytia hemisphaerica|type=CDS|length=879bp|location=Sequence derived from alignment at scaffold_225:212300..213296 (Clytia hemisphaerica)
GTAAGAAGTGTTCAAAATCATATGATGGAAAatatttgtctgttttgttc
gAAATCTATCAATAGTAAGTATTGGTTTTGTGACCGTTCCTGTAAAAGTA
AACATCTAGAAAATGGGTTTACGTTCAAATTGAGATTTCTAACTAAAGAA
ATGGAACTGAATTCCAAGGATTTTGTTAATATAGTTGAAGTAAAGCAGAG
AATTCAACAAGAATATAAGATACATTTTCATGCACAAGTTATACTTTACA
ACGGTTTGGAATTGGAAAATTATTGGCAAATCAATGTTGTTTATCTAAAA
ATGATACGTGATCTTggacaaaaacaaagcaaaaaggaATTATGTTTGAA
TCTAATAATCAATAAAAAGACACTGGAAATTCAAGTTATACCGAGAATCG
TTGAATATGAATCGACCATTCCTCTGATTACTTTAGATTCGTGTACTATT
GGTAAAATTAAAGAAACTATCTGTAAACATATGAAAGAAGAGCTAAAAAA
CCCAAGATTTATACATCTTGAAAAGGAAGATGGAACTTTCCTAGAAGATG
AATATCAACTCAAACATTATTCTATAGAATCCCAttctaaaatttattta
aaaagaaaagtatatttGCGAGTTTATTTTCAATATGCTTTGGAAATTGA
ACATCTTGAAATTTTCGAGTACGAAGGTAGAACATTATATCAAGTACTTA
AGCAGATCAAAGTCGAACATGTTCTGAGCATACGTATTTCGGACAAGAAT
GTTCGTCAACTTAACATGacgtattttgaaaataatatggATTTGTCAAC
AACGATGTCTTCATTCTATGACTTGCAACTGAAGATTGGTAACCTTTCTC
CATCTAAACGTCGATGTATTTTGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053091-exon-scaffold_225-1491911889:212300..213296 | TCONS_00053091-exon-scaffold_225-1491911889:212300..213296 | Clytia hemisphaerica | exon |
| TCONS_00053091-exon-scaffold_225-1510915933:212300..213296 | TCONS_00053091-exon-scaffold_225-1510915933:212300..213296 | Clytia hemisphaerica | exon |
| TCONS_00053091-exon-scaffold_225-1575043694:212300..213296 | TCONS_00053091-exon-scaffold_225-1575043694:212300..213296 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:212300..213296 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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