TCONS_00053090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053090
Unique NameTCONS_00053090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length460

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053090 ID=TCONS_00053090|Name=TCONS_00053090|organism=Clytia hemisphaerica|type=transcript|length=460bp
aagaaacattgaggctgcttggtaaaactagtttcttaaaaaaaaaaaaa
cgtgtatttagcATTGGCTAAATCACAGAATCTACACTATGATAAAGCTG
CTGCAGTCTTTGGCGAACAAGAattcaaattcaacaaactGAATGTGATT
AATAATTTTTATCCTTACGAATACGTGTATAAAACACTTCTCTCCATCAT
GGATGTAGGGGATATTCACCAAAGATCaacaaatgaattttttttcaagt
tcaatatCTTAGACTATGAATCAGTTTATGCTGATTTTGGAAATGTTGAA
TTTCTAGCAAGTCGCCGAAAGTCAGGTGATGTAGCATATATaaataagaa
ctttttattGGTAGCTGAAAATTCGAACCGTTGTTCACTTCGCTTTCAAA
TTGAAGGCTTCGATGAGGAAAATTCAAAACTATACATTTTAAATCCGAAA
TGTTTCCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_225:203704..204163

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053090 ID=TCONS_00053090|Name=TCONS_00053090|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at scaffold_225:203704..204163 (Clytia hemisphaerica)
GTTGGAAACATTTCGGATTTAAAATGTATAGTTTTGAATTTTCCTCATCG
AAGCCTTCAATTTGAAAGCGAAGTGAACAACGGTTCGAATTTTCAGCTAC
CaataaaaagttcttatttATATATGCTACATCACCTGACTTTCGGCGAC
TTGCTAGAAATTCAACATTTCCAAAATCAGCATAAACTGATTCATAGTCT
AAGatattgaacttgaaaaaaaattcatttgttGATCTTTGGTGAATATC
CCCTACATCCATGATGGAGAGAAGTGTTTTATACACGTATTCGTAAGGAT
AAAAATTATTAATCACATTCagtttgttgaatttgaatTCTTGTTCGCCA
AAGACTGCAGCAGCTTTATCATAGTGTAGATTCTGTGATTTAGCCAATgc
taaatacacgtttttttttttttaagaaactagttttaccaagcagcctc
aatgtttctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033532XLOC_033532Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053090-exon-scaffold_225-1491911889:203704..204163TCONS_00053090-exon-scaffold_225-1491911889:203704..204163Clytia hemisphaericaexon
TCONS_00053090-exon-scaffold_225-1510915933:203704..204163TCONS_00053090-exon-scaffold_225-1510915933:203704..204163Clytia hemisphaericaexon
TCONS_00053090-exon-scaffold_225-1575043694:203704..204163TCONS_00053090-exon-scaffold_225-1575043694:203704..204163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:203704..204163 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.170654	0	0	0.816341	0.279975	0	0.0367127	0	0	0.578743	0	0	0.822506	1.599	5.14392	4.88902	2.82092	1.89345	0.524283	1.60848	1.5884	2.16788	3.32891	3.41604	3.97352	3.03303	7.35801	9.3589	2.67085	3.31796
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top