TCONS_00053088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053088
Unique NameTCONS_00053088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053088 ID=TCONS_00053088|Name=TCONS_00053088|organism=Clytia hemisphaerica|type=transcript|length=426bp
aaacttttaaacaacGTGTAATTCCCGTGaaaaacaaagaggaatgaatc
tataggggtggtacagtaactttcggtcggggttgtgggtTGTGGAGGGC
Gatatatgtcgttctttgatagttggggttagggtttgtcgttctttttg
tcgctttttggTCTGGAAACGCTAGATGAACAGTCTCTTTGTGCCACTGC
ATTCAGAAGACATTCGCAATTTTTATACTTCATTGTTAATTATGttaaaa
gaaaccaaaaaaattatttttgaaatcataaaattatgtaaaatatgCGA
AAAACTATGGGTAACATTCAGATATGGATCCAGCACCTTTAAATTGATGA
AATCAAATAACAAAAGCTTGGTCACCGACATTTTGAATTGTGTTATTACA
AGTacttataattttttaatttgttg
Run BLAST on NCBI

transcript from alignment at scaffold_225:195151..195576

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053088 ID=TCONS_00053088|Name=TCONS_00053088|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at scaffold_225:195151..195576 (Clytia hemisphaerica)
caacaaattaaaaaattataagtACTTGTAATAACACAATTCAAAATGTC
GGTGACCAAGCTTTTGTTATTTGATTTCATCAATTTAAAGGTGCTGGATC
CATATCTGAATGTTACCCATAGTTTTTCGcatattttacataattttatg
atttcaaaaataatttttttggtttcttttaaCATAATTAACAATGAAGT
ATAAAAATTGCGAATGTCTTCTGAATGCAGTGGCACAAAGAGACTGTTCA
TCTAGCGTTTCCAGAccaaaaagcgacaaaaagaacgacaaaccctaacc
ccaactatcaaagaacgacatatatCGCCCTCCACAacccacaaccccga
ccgaaagttactgtaccacccctatagattcattcctctttgtttttCAC
GGGAATTACACgttgtttaaaagttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033530XLOC_033530Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053088-exon-scaffold_225-1491911889:195151..195576TCONS_00053088-exon-scaffold_225-1491911889:195151..195576Clytia hemisphaericaexon
TCONS_00053088-exon-scaffold_225-1510915933:195151..195576TCONS_00053088-exon-scaffold_225-1510915933:195151..195576Clytia hemisphaericaexon
TCONS_00053088-exon-scaffold_225-1575043694:195151..195576TCONS_00053088-exon-scaffold_225-1575043694:195151..195576Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:195151..195576 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.21212	0.370228	0.36221	0.220478	0.348449	0.210195	0.393563	0	0	0.496918	0	0.9786	0.564603	2.04239	1.79329	0.122733	0.88058	3.12832	2.5461	1.26459	0.971486	0.56237	0.852126	1.22874	0.46998	4.70778	4.30651	1.45171	0.924412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top