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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00053084 ID=TCONS_00053084|Name=TCONS_00053084|organism=Clytia hemisphaerica|type=transcript|length=1269bp
ctttagcaaaaaaaatttgttgacatgtgaaatcagcattttaatgaaat
gagaaaaaacattATCAAAGCAATATAAGAGACTAATGTTTGTATGTAGC
TTCAGAATCTAGCTCTGGATTAAGACCATCCGAGACCATCGTTGTTGATT
AATAAGTTATTTTCTAAATCATTTAAACATACTAAAATACCTAAGTGTAC
CTATAGATATTGTAAGATATCTCGTGAGTGAGTTTTAAGTTCAGCGAATG
AGATGTCGAAGAAGCGAATTGAGTACtgcaaaaaatgtttcaacaaaaaa
cgTGACGACCTAGTAATTTGTAAACATTGTGGATCAAAGGAAAATGCTAT
CAAATGTACAAATTGTAATGATAAACTTATAAAGGAGATATCGGATCTGT
ATTGTGATTATTGTATGCCAGTGAAAGATTTTAAAACACTCAAACTAAAA
TTTCTGACAAAGGAGGAAACATTGGATCAAAGTTTGTTCAGAGATATCGG
CTCCATCAAAAGCTATATACTTGAAAACTATAAAGTGCGTGTTGGTAATC
AAAAGATATTATTTCAGGGGACAGAGTAGAATAATGTTACAAAGATTCCA
GacctttacttgaaaaaagtacAAATTCCTGCTTTAACTGATAAAGAATT
AATTTTGAACATATTAATTACACGCAGACCATTTCAGGTGGAAGTACACT
TAAAAATTTCTGATTACAATCAAACATTTGGGACATATGTTACTGTTTCT
GATCAAAACACTATTGCTGACTTAAAGAGGAAACTAAACACAACTGTCCT
TTATTGCCCACCTTTTGACTTTATGCATATCGAAAGCAAAGATGGCGTGC
AACTTTCAGATGATAAAACGCTAGAATATTATGGAATTTATGAGGCAGGA
TCAGAACTTTATTTGAAACAAAGAACCCTAGTCAGACTTTATTTCAGAAA
TAGTGGAGATACAATTGAACGCGTCGTAATCATTGAAGGAGATTATGTAA
GGAAAACTATTGGTGATGTGATGATAGATTATCAAAAGGAATTTCCAGGA
GCGAGCataaactttaaaaaagatGATTTGAGTTTCACAGGTGATCAAAT
GTTGTATGGATTAAAAGATTTGAAGCTATTTCAGGTTTATGACTTAAGTT
TTACTGTACGTGAATCAAGGCTAAAGATTAAGAGAAATTGTAGCTTGATG
TAAATATTAAAAGTTATCAACTCCAAATTCATCATCTAAGGATCTTATAA
ACAATCTTCTAGTATATGT Run BLAST on NCBI protein sequence of TCONS_00053084-protein >TCONS_00053084-protein ID=TCONS_00053084-protein|Name=TCONS_00053084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MHIESKDGVQLSDDKTLEYYGIYEAGSELYLKQRTLVRLYFRNSGDTIER
VVIIEGDYVRKTIGDVMIDYQKEFPGASINFKKDDLSFTGDQMLYGLKDL
KLFQVYDLSFTVRESRLKIKRNCSLM Run BLAST on NCBI transcript from alignment at scaffold_225:118302..119570 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00053084 ID=TCONS_00053084|Name=TCONS_00053084|organism=Clytia hemisphaerica|type=transcript|length=1269bp|location=Sequence derived from alignment at scaffold_225:118302..119570 (Clytia hemisphaerica)
ACATATACTAGAAGATTGTTTATAAGATCCTTAGATGATGAATTTGGAGT
TGATAACTTTTAATATTTACATCAAGCTACAATTTCTCTTAATCTTTAGC
CTTGATTCACGTACAGTAAAACTTAAGTCATAAACCTGAAATAGCTTCAA
ATCTTTTAATCCATACAACATTTGATCACCTGTGAAACTCAAATCatctt
ttttaaagtttatGCTCGCTCCTGGAAATTCCTTTTGATAATCTATCATC
ACATCACCAATAGTTTTCCTTACATAATCTCCTTCAATGATTACGACGCG
TTCAATTGTATCTCCACTATTTCTGAAATAAAGTCTGACTAGGGTTCTTT
GTTTCAAATAAAGTTCTGATCCTGCCTCATAAATTCCATAATATTCTAGC
GTTTTATCATCTGAAAGTTGCACGCCATCTTTGCTTTCGATATGCATAAA
GTCAAAAGGTGGGCAATAAAGGACAGTTGTGTTTAGTTTCCTCTTTAAGT
CAGCAATAGTGTTTTGATCAGAAACAGTAACATATGTCCCAAATGTTTGA
TTGTAATCAGAAATTTTTAAGTGTACTTCCACCTGAAATGGTCTGCGTGT
AATTAATATGTTCAAAATTAATTCTTTATCAGTTAAAGCAGGAATTTgta
cttttttcaagtaaaggtCTGGAATCTTTGTAACATTATTCTACTCTGTC
CCCTGAAATAATATCTTTTGATTACCAACACGCACTTTATAGTTTTCAAG
TATATAGCTTTTGATGGAGCCGATATCTCTGAACAAACTTTGATCCAATG
TTTCCTCCTTTGTCAGAAATTTTAGTTTGAGTGTTTTAAAATCTTTCACT
GGCATACAATAATCACAATACAGATCCGATATCTCCTTTATAAGTTTATC
ATTACAATTTGTACATTTGATAGCATTTTCCTTTGATCCACAATGTTTAC
AAATTACTAGGTCGTCAcgttttttgttgaaacattttttgcaGTACTCA
ATTCGCTTCTTCGACATCTCATTCGCTGAACTTAAAACTCACTCACGAGA
TATCTTACAATATCTATAGGTACACTTAGGTATTTTAGTATGTTTAAATG
ATTTAGAAAATAACTTATTAATCAACAACGATGGTCTCGGATGGTCTTAA
TCCAGAGCTAGATTCTGAAGCTACATACAAACATTAGTCTCTTATATTGC
TTTGATaatgttttttctcatttcattaaaatgctgatttcacatgtcaa
caaattttttttgctaaag Coding sequence (CDS) from alignment at scaffold_225:118302..119570 >TCONS_00053084 ID=TCONS_00053084|Name=TCONS_00053084|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_225:118302..119570 (Clytia hemisphaerica)
TTACATCAAGCTACAATTTCTCTTAATCTTTAGCCTTGATTCACGTACAG
TAAAACTTAAGTCATAAACCTGAAATAGCTTCAAATCTTTTAATCCATAC
AACATTTGATCACCTGTGAAACTCAAATCatcttttttaaagtttatGCT
CGCTCCTGGAAATTCCTTTTGATAATCTATCATCACATCACCAATAGTTT
TCCTTACATAATCTCCTTCAATGATTACGACGCGTTCAATTGTATCTCCA
CTATTTCTGAAATAAAGTCTGACTAGGGTTCTTTGTTTCAAATAAAGTTC
TGATCCTGCCTCATAAATTCCATAATATTCTAGCGTTTTATCATCTGAAA
GTTGCACGCCATCTTTGCTTTCGATATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00053084-exon-scaffold_225-1491911889:118302..119570 | TCONS_00053084-exon-scaffold_225-1491911889:118302..119570 | Clytia hemisphaerica | exon |
| TCONS_00053084-exon-scaffold_225-1510915933:118302..119570 | TCONS_00053084-exon-scaffold_225-1510915933:118302..119570 | Clytia hemisphaerica | exon |
| TCONS_00053084-exon-scaffold_225-1575043694:118302..119570 | TCONS_00053084-exon-scaffold_225-1575043694:118302..119570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_225 | supercontig | scaffold_225:118302..119570 . |
Blast
The following BLAST results are available for this feature:
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