TCONS_00053078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053078
Unique NameTCONS_00053078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053078 ID=TCONS_00053078|Name=TCONS_00053078|organism=Clytia hemisphaerica|type=transcript|length=434bp
GAAATATTTCCCTTAGAAAGCTAAACAATGGATAATAGTGGTGGATATAC
GTTTAAGTTGGAATCTGGTGAAATTCCTGCTGAATACAAATGCTTGATTT
GTCATTTGTTAATAAGAAACGCAACAGAGCTTCCATGTTCACACGTTTTT
TGTGACCAATGTTTGTTAAAATGGGAAGAGAGACAACATGATATGAACAA
ggATGCCCCTTTAAGATGCTCACTATGCAACCAAGCTTACAACAATCAAA
CCGATAAACATCCCTCTAAAGCATTGGATCGTATTATCAAAACCACATTA
AATGTTCTATGCCACCAAAAAGAAAATGGTTGTGAATGGATTGGAAAGAT
TGTTGAATATAAGGATCATGCGCCTATATGTCAATTCGTCAAAATAAATT
GCAGTCTAGCGGGATGCAAGGAGAAAATAGAGAG
Run BLAST on NCBI

protein sequence of TCONS_00053078-protein

>TCONS_00053078-protein ID=TCONS_00053078-protein|Name=TCONS_00053078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MDNSGGYTFKLESGEIPAEYKCLICHLLIRNATELPCSHVFCDQCLLKWE
ERQHDMNKDAPLRCSLCNQAYNNQTDKHPSKALDRIIKTTLNVLCHQKEN
GCEWIGKIVEYKDHAPICQFVKINCSLAGCKEKIE
Run BLAST on NCBI

transcript from alignment at scaffold_225:207424..209717-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053078 ID=TCONS_00053078|Name=TCONS_00053078|organism=Clytia hemisphaerica|type=transcript|length=2294bp|location=Sequence derived from alignment at scaffold_225:207424..209717- (Clytia hemisphaerica)
GAAATATTTCCCTTAGAAAGCTAAACAATGGATAATAGTGGTGGATATAC
GTTTAAGTTGGAATCTGGTGAAATTCCTGCTGAATACAAATGCTTGATTT
GTCATTTGTTAATAAGAAACGCAACAGAGCTTCCATGTTCACACGTTTTT
TGTGACCAATGTTTGTTAAAATGGGAAGAGAGACAACATGATATGAACAA
GTAAGTTTGTCAGGACTTTTCAAGGTTCTAAAATGTCTTTCGGTGTATTC
TTTATTCGAGTTTATATTGAATGTCTTTATTCGAGTTTATATTGAATGCC
AAAACAGAATACAAAAATATTTCCCCGCAGAAGTACTTGATGGATTTCCT
TTTAAAAATGCAAAGAAGTTTACTTTCTGAAATACAAAATGAAGAAAATT
TTTGTTGGAAATACAAAGTGAATTATTTTCTTCAAAAATTATTAGAAATG
GAATGTGAATTTTCTTTTAGAAATGAAAGAAATTTTTCTTAAGAAACTCT
TAAGAACTTACCTCACGAAATACTAAGTTATTGTTCGATAAAAATCAAGA
AAACAAAAATTTGTTCAATTTATTGTAAAAGCTTTTCGACTATCGTCATC
GTCAGTACAGTAAAAAATACATAAGCATATGAAAAAGTATCTACAATTTA
TAAAGAAAATGTTAAAAAGTTGAGAAATCACATCAATTGTCACGGGAGCA
ACGATGCCATGACGATTAATGTGTATTCTTTTGTTCCAGAGTAAAATAAT
TTACGTTATGCCGTTTCTAAATAAGTTTAATTGCTTAGTCTCTAGTTGAT
TGTTTAGTGAATGCTTTTTCGATGCGATTTGGAAAGCCTCTAAGTTTTTC
CTTTCTTTGCTCTTAAGTGGTGCCGAAATTAGAACCTTCCAGTTAAATAC
ATGACTATTATCATGACTCTCTAAATGTTTTGCGGGCTCCGAATTACCTT
TTAGCGAGTTGTGTTCACTCCAGCGAACTTCAACATTTCTAGCCGTTTCA
CCGATACTAAGTTATTCTTCCATCAAAAATACAAAGTTATATTCAATTAA
GAATAAAGTGAATTTCCTTCAGAAATACAAGGTGAATTTTTCATCCGAAT
GCAAGTTGAAATTTCCTTTAGAAGAATACGTAAATTTTCCTTTAGAAATG
CAAAGTACAAAGTTAATTCTCCTTCATAAATATTAAAATCAATTTTCATA
TATATGAAGAAAAAGTCAATTTTTCTTGAGAAATACATGGTAAATTTTCC
TTCAGAAATACAAAAACTCTTCCGATCCTGTTTCAATTTTTTAGGGATGC
CCCTTTAAGATGCTCACTATGCAACCAAGCTTACAACAATCAAACCGATG
TCAGGATAAGAAAGTTTATTTATTTTTTTCTAAACTAATTTTTTTATGTA
GAACAAACGATATAATGGTTGTCTTTTTAATTTCTTTCTTGCAAATCCTT
TAGCCTGGAGATCCAAGCTGTTTAAGTTTCTGCTGTTTACAGCTACCAAT
CAGTGCCGTAATATTTGCCCCAAAGGGGGATTTCCCTCACTATCTTAAAA
TCCTCGCCAGAGCACCAAAACTTTTTTAAATTCAGGAAAAAAACGTGAAA
ATACCCAAAATTGTCAATGTATTTCGGCACCCATTGTAGGTCTGGCTAGA
TGGTTGGAAGCCAAGTAAACTTTTCATCTTGGAGCAATCAAAAAATTGCA
GAGCTAATAGACTAACAAATTCTATGAAGCCACTCCGTCACCGAGACCTG
TCGAGAGAGGATATGTCTGTCAAACGGTATTACTTTGCACTTGAGGTTGT
ATTTCTACTATCAAGCATTTTCCTATTGCTTTTCTTCTCAAGAAACATCC
CTCTAAAGCATTGGATCGTATTATCAAAACCACATTAAATGTTCTATGCC
ACCAAAAAGAAAATGGTTGTGAATGGATTGGAAAGATTGTTGAATATAAG
GTCAGTAGAATGCCGGGACAAAGCCTCCCAAGGATTTATTTCAGTAATTC
ACGTCCGAGTCTAAAGACTTTTGTGTCAAAAGTTGATATAACAGGGGATT
GACAAATTTAGGGGAGTTGGATTTTAATAAGACAAATAAGAAGTGATATA
TAATTTTTAGGGCTCCAGGGTTATAAACAGAAAACGATTACTGTACGACG
CAGAGATAAGATTCTGAACCATCAATAGTGCATACTTTAAAAATTCATAA
ATCATCAACACTTTTATACACAGGATCATGCGCCTATATGTCAATTCGTC
AAAATAAATTGCAGTCTAGCGGGATGCAAGGAGAAAATAGAGAG

Coding sequence (CDS) from alignment at scaffold_225:207424..209717-

>TCONS_00053078 ID=TCONS_00053078|Name=TCONS_00053078|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_225:207424..209717- (Clytia hemisphaerica)
GATCATGCGCCTATATGTCAATTCGTCAAAATAAATTGCAGTCTAGCGGG
ATGCAAGGAGAAAATAGAGAAACATCCCTCTAAAGCATTGGATCGTATTA
TCAAAACCACATTAAATGTTCTATGCCACCAAAAAGAAAATGGTTGTGAA
TGGATTGGAAAGATTGTTGAATATAAGGGATGCCCCTTTAAGATGCTCAC
TATGCAACCAAGCTTACAACAATCAAACCGATATGGATAATAGTGGTGGA
TATACGTTTAAGTTGGAATCTGGTGAAATTCCTGCTGAATACAAATGCTT
GATTTGTCATTTGTTAATAAGAAACGCAACAGAGCTTCCATGTTCACACG
TTTTTTGTGACCAATGTTTGTTAAAATGGGAAGAGAGACAACATGATATG
AACAAGATCATGCGCCTATATGTCAATTCGTCAAAATAAATTGCAGTCTA
GCGGGATGCAAGGAGAAAATAGAGAAACATCCCTCTAAAGCATTGGATCG
TATTATCAAAACCACATTAAATGTTCTATGCCACCAAAAAGAAAATGGTT
GTGAATGGATTGGAAAGATTGTTGAATATAAGGGATGCCCCTTTAAGATG
CTCACTATGCAACCAAGCTTACAACAATCAAACCGATATGGATAATAGTG
GTGGATATACGTTTAAGTTGGAATCTGGTGAAATTCCTGCTGAATACAAA
TGCTTGATTTGTCATTTGTTAATAAGAAACGCAACAGAGCTTCCATGTTC
ACACGTTTTTTGTGACCAATGTTTGTTAAAATGGGAAGAGAGACAACATG
ATATGAACAAGATCATGCGCCTATATGTCAATTCGTCAAAATAAATTGCA
GTCTAGCGGGATGCAAGGAGAAAATAGAGAAACATCCCTCTAAAGCATTG
GATCGTATTATCAAAACCACATTAAATGTTCTATGCCACCAAAAAGAAAA
TGGTTGTGAATGGATTGGAAAGATTGTTGAATATAAGGGATGCCCCTTTA
AGATGCTCACTATGCAACCAAGCTTACAACAATCAAACCGATATGGATAA
TAGTGGTGGATATACGTTTAAGTTGGAATCTGGTGAAATTCCTGCTGAAT
ACAAATGCTTGATTTGTCATTTGTTAATAAGAAACGCAACAGAGCTTCCA
TGTTCACACGTTTTTTGTGACCAATGTTTGTTAAAATGGGAAGAGAGACA
ACATGATATGAACAAGATCATGCGCCTATATGTCAATTCGTCAAAATAAA
TTGCAGTCTAGCGGGATGCAAGGAGAAAATAGAGAAACATCCCTCTAAAG
CATTGGATCGTATTATCAAAACCACATTAAATGTTCTATGCCACCAAAAA
GAAAATGGTTGTGAATGGATTGGAAAGATTGTTGAATATAAGGGATGCCC
CTTTAAGATGCTCACTATGCAACCAAGCTTACAACAATCAAACCGATATG
GATAATAGTGGTGGATATACGTTTAAGTTGGAATCTGGTGAAATTCCTGC
TGAATACAAATGCTTGATTTGTCATTTGTTAATAAGAAACGCAACAGAGC
TTCCATGTTCACACGTTTTTTGTGACCAATGTTTGTTAAAATGGGAAGAG
AGACAACATGATATGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033520XLOC_033520Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053078-exon-scaffold_225-1575043694:209518..209717TCONS_00053078-exon-scaffold_225-1575043694:209518..209717Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1575043694:208369..208423TCONS_00053078-exon-scaffold_225-1575043694:208369..208423Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1575043694:207768..207875TCONS_00053078-exon-scaffold_225-1575043694:207768..207875Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1575043694:207424..207494TCONS_00053078-exon-scaffold_225-1575043694:207424..207494Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1510915933:209518..209717TCONS_00053078-exon-scaffold_225-1510915933:209518..209717Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1510915933:208369..208423TCONS_00053078-exon-scaffold_225-1510915933:208369..208423Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1510915933:207768..207875TCONS_00053078-exon-scaffold_225-1510915933:207768..207875Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1510915933:207424..207494TCONS_00053078-exon-scaffold_225-1510915933:207424..207494Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1491911889:209518..209717TCONS_00053078-exon-scaffold_225-1491911889:209518..209717Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1491911889:208369..208423TCONS_00053078-exon-scaffold_225-1491911889:208369..208423Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1491911889:207768..207875TCONS_00053078-exon-scaffold_225-1491911889:207768..207875Clytia hemisphaericaexon
TCONS_00053078-exon-scaffold_225-1491911889:207424..207494TCONS_00053078-exon-scaffold_225-1491911889:207424..207494Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053078-proteinTCONS_00053078-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_225supercontigscaffold_225:207424..209717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.132873	0	0	0.105013	1.5706	1.24536	3.93955	3.74732	1.17858	1.45589	2.68186	1.04784	0.762264	1.11542	0.542374	1.31493	1.8133	0.755449	3.45934	3.27839	1.5751	1.24816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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