TCONS_00053041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053041
Unique NameTCONS_00053041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053041 ID=TCONS_00053041|Name=TCONS_00053041|organism=Clytia hemisphaerica|type=transcript|length=276bp
gttgtgcacaaaatattctagacgactatattgatgctcctgacaagttt
tctacttcctattttttactgagttaagtcgtctagcatgctagactagg
TGTTAGATTTAATGAGCATCTAGACTGGACTGAACATGTCAACCATACCA
TGAGATCTTGTTTTGCCACGTTACGTAGCTTAAAACGATTCAAGAACACC
GCATCATGGCAGCAGCGCAAGATGCTTATGGAGTCACTGGTTCTCAGTAA
ACTGACATATGGCATCGCTTTACTAT
Run BLAST on NCBI

transcript from alignment at scaffold_224:18625..18900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053041 ID=TCONS_00053041|Name=TCONS_00053041|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at scaffold_224:18625..18900 (Clytia hemisphaerica)
ATAGTAAAGCGATGCCATATGTCAGTTTACTGAGAACCAGTGACTCCATA
AGCATCTTGCGCTGCTGCCATGATGCGGTGTTCTTGAATCGTTTTAAGCT
ACGTAACGTGGCAAAACAAGATCTCATGGTATGGTTGACATGTTCAGTCC
AGTCTAGATGCTCATTAAATCTAACAcctagtctagcatgctagacgact
taactcagtaaaaaataggaagtagaaaacttgtcaggagcatcaatata
gtcgtctagaatattttgtgcacaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033499XLOC_033499Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053041-exon-scaffold_224-1491911889:18625..18900TCONS_00053041-exon-scaffold_224-1491911889:18625..18900Clytia hemisphaericaexon
TCONS_00053041-exon-scaffold_224-1510915933:18625..18900TCONS_00053041-exon-scaffold_224-1510915933:18625..18900Clytia hemisphaericaexon
TCONS_00053041-exon-scaffold_224-1575043694:18625..18900TCONS_00053041-exon-scaffold_224-1575043694:18625..18900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:18625..18900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.61267	4.76244	3.9731	5.13895	3.5218	4.38564	4.29791	5.90238	3.8852	0	2.66225	5.05256	1.95413	7.945	4.94986	5.04235	4.22653	4.55248	6.67201	12.2841	10.0359	0	3.11731	2.56532	0.966193	18.4469	29.483	9.199	10.3688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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