TCONS_00053034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053034
Unique NameTCONS_00053034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1736

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053034 ID=TCONS_00053034|Name=TCONS_00053034|organism=Clytia hemisphaerica|type=transcript|length=1736bp
CCTCTATTAGCTAGGAATGTCAGGGGGTTGTCAAATGAAAACATTATAAA
GCGTCAAGTGTAACTGGATATGCTATTTTCATTGATGAGAAATTCATGAC
TGTCAAAAACGATACAAGCCTATTTCTCTTTTTACTCGTATTGAAAATGA
CAACGCAGGAGAGAGTGGTATGTCTTGAGTTAACATTTTAAAGACATAGC
GAAAGACAAGAATGGAAGAAAGCAGCGCAGAATACAAAATCCTTGCTTCA
GCAGGGATCATGGTGCTGATACTACTATCGTTATTTGGAAATATATTAGT
TTGTTGTGCAGTCTATCATTCAAGGAACCTTCGAGCTCGCGTCAATATTT
TAATCGTATCGTTAGCAGTATCAGATATCCTCATTGCTACCATCTCCATG
CCGCTATGGATGAACCTTATACTAACAAACTACCGCAACATGTCTCATCA
AGCAACTATTCGCATGCTAGAGTTCTCAATGTTCGTAGATATACTGGGTG
GTATAGCATCCATTGGAAATTTGGTCGCAATAAGTTATGAGCGACTGTGG
TCGGTCTTTTCACCTTTGAACCATCGACGATATCTAACAAATTTTACACT
TGGAATTATAGTGGCCTGTGTTTGGGCTTATGCAATTTTCGTAGCAGCAA
CAACAGTTGCATGGTTTCACACTTGGTATTATGTCACTTTGTATAATGCA
ATCGTTGGTTTCTTTTTTCCACTGTTTCTCATCATCGTGGCCTATCTTTG
CATATTTATCATCGTGAACAAAAGCCCTCGAACGGTCGTTTCTACAGAAG
ACAGTTTTAAAATCAACTTAACAATATGCATCATCGTTGGACTGTTTGTC
GTTTGCTGGGCACcgcatttcattttttcagttctcCATCAACATTGTGA
GGTTTGTTACAATCATTTACTTGACAACCTATGGTACCGCTCTTTATCAA
CTTGGCTGCATTATGCAAACAGTTGTGTCAACCCGTTAGTGTACGGTATT
GCTAACGCTCAATATCAAGAAGCTTTCAAACACGTCCTCAAAAGACTGTG
TCAATGTTGCTTCTTCAAAAAAGATACATTACAAGATACTGAGAGACTGC
CATCACTTTACTTTCCGAATGGACATCAGGAGAGATGTAATATGAATGAT
AAATTACGTGTAGAACTTGAGCCTGATGAAAAGGAACTAGTGACGGGTGC
AGTAGGTTACGATGAAGACCACTCCTATCCACCAGGAGATTACAGAGCAT
TGCCAATATTTCCAGCAGGTCACAGGAACAGACGGTGGACATCAGATACT
TCAACTACAACTGAAACATTTCTTTCGACTTCACTCATGGAAACACCCAT
TATGGAAGACGAGCATGCTCAAACTGCACTTATCATTCCCACTGTATATA
TTCATCATTAATTCAAAGTTATTCTTAATCTATGAAAATAACCATGGAAT
CAACAACAACACTTCTAAAATTTAGAAACTTATATTTAGATTAgatagaa
actttttttatagTTAAAATAGGCTTTTATATTGAACTATTTTTTATGGT
CCAGCAGCGGGGCCAgcagtttcattttttaatttcagttAATGTTAAAA
GTGACTAAATCCGTGAAGAAAACTTGTATAAATTATATTACCTTTAATCC
AACACACAGGCAGACTTGATTTTCAACATGATTTCTTTTAACTGCTGTAA
ATTTGTTGGAGGATCCGGTTCATAAGTCGAACACGA
Run BLAST on NCBI

protein sequence of 7 transmembrane protein

>TCONS_00053034-protein ID=TCONS_00053034-protein|Name=7 transmembrane protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MEESSAEYKILASAGIMVLILLSLFGNILVCCAVYHSRNLRARVNILIVS
LAVSDILIATISMPLWMNLILTNYRNMSHQATIRMLEFSMFVDILGGIAS
IGNLVAISYERLWSVFSPLNHRRYLTNFTLGIIVACVWAYAIFVAATTVA
WFHTWYYVTLYNAIVGFFFPLFLIIVAYLCIFIIVNKSPRTVVSTEDSFK
INLTICIIVGLFVVCWAPHFIFSVLHQHCEVCYNHLLDNLWYRSLSTWLH
YANSCVNPLVYGIANAQYQEAFKHVLKRLCQCCFFKKDTLQDTERLPSLY
FPNGHQERCNMNDKLRVELEPDEKELVTGAVGYDEDHSYPPGDYRALPIF
PAGHRNRRWTSDTSTTTETFLSTSLMETPIMEDEHAQTALIIPTVYIHH
Run BLAST on NCBI

transcript from alignment at scaffold_224:35075..38032-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053034 ID=TCONS_00053034|Name=TCONS_00053034|organism=Clytia hemisphaerica|type=transcript|length=2958bp|location=Sequence derived from alignment at scaffold_224:35075..38032- (Clytia hemisphaerica)
CCTCTATTAGCTAGGAATGTCAGGGGGTTGTCAAATGAAAACATTATAAA
GCGTCAAGTGTAACTGGATATGCTATTTTCATTGATGAGAAATTCATGAC
TGTCAAAAACGATACAAGCCTATTTCTCTTTTTACTCGTATTGAAAATGA
CAACGCAGGAGAGAGTGGTATGTCTTGAGTTAACATTTTAAAGGTAAGCT
CATTATCTATATAATTGAGACACAAAGCCACTCCAAGTTTTAAAATACCT
GTGTTAAAGAAGGATCGCTGGACTAGCTATAAGTCCAATCTGCTTAGCTT
ATTTGTCAGTGGTTTGTCCAAAGATTGTAATACTCATTATCAAAGAGGAT
TAATTGGCAATTGCATCGTTTATTATTTCAAAACAAAATTGACTTGAGGC
TAAAATTTAAGTTCATTGAATCTTAATCATAAACATTCAAACAGTCTTAG
AACATTCTTAAAGCTTTTTCAAAAATTCTTAACTATCTAAAATCTTTACA
AGTAGAAAAATTTGGAATATCATTCTAAGGGTCTTTGGCATGCAACGAAA
AACGAACAAGTCGGAAAATGTCATAACATGTTTAGAAGTTGAATCAGTTT
GCATATATAGATTTTTTGGTTAGCCGAGGAGGAGTTTAGACACTTTCTGG
ACTAGTTAACTTGATATCTGAAGTCTATTTAAAGCAGACAACTATTTTAG
AGGATGGAGTTGGTTAGATAAAACATTTGTCCAAAAGGTAAAACTGCATT
TTATGGATGGAGAGCGACGTCTTTAAAATCATTATGAAATTCAGCAGAAA
AAGTGAAAGCCTGACATTGTTAAAAATGAAAGGAACCTTTTTACAAAGTG
AAAATGAAGAGAAACAATAAAGAATTGTTTTAGACAAGACACATTTTACG
ACAACAAAGTACGGGCTTGAACGAATGACAAGAGATAAGATAAGCAAACC
GCAAGAATTTAACATTACGTGTTTTCGGTTTTACTTTTTTACATATTGAT
GTAAAACTTTTCTTTTATAAACGGTTTCTTTTCTCGGGTGTAAATGATGT
TATAAAGTATGAGAACATTCATCCAAATATACAAGTAAAAGAAAAGTGGG
ATGACTTAGTAGGAATGTGCGTTGGATAGTCAAGATAAACATTTTTGTGT
TGATATGATATATGAGCTAAACATTTAATATCACTTGGTTAAGCTTCCTG
GTGATGTTTGTCTCCTTTAAAGCTTGTGATAACATTTCACAGCAAAAAGT
ATTAAGCTCTATAGGTTACTTGTTATCTAGCGGATGGATTAGAAAACATG
GCTTCCAGAATCATCAAAGGATAAAAGGGATGGCTAGCAAACATATTGTC
TCTTATGAAATTTCTTTACATTCACACCCATCGATAATTAAGTTATTTCT
GTCATTTCGTTTCAGACATAGCGAAAGACAAGAATGGAAGAAAGCAGCGC
AGAATACAAAATCCTTGCTTCAGCAGGGATCATGGTGCTGATACTACTAT
CGTTATTTGGAAATATATTAGTTTGTTGTGCAGTCTATCATTCAAGGAAC
CTTCGAGCTCGCGTCAATATTTTAATCGTATCGTTAGCAGTATCAGATAT
CCTCATTGCTACCATCTCCATGCCGCTATGGATGAACCTTATACTAACAA
ACTACCGCAACATGTCTCATCAAGCAACTATTCGCATGCTAGAGTTCTCA
ATGTTCGTAGATATACTGGGTGGTATAGCATCCATTGGAAATTTGGTCGC
AATAAGTTATGAGCGACTGTGGTCGGTCTTTTCACCTTTGAACCATCGAC
GATATCTAACAAATTTTACACTTGGAATTATAGTGGCCTGTGTTTGGGCT
TATGCAATTTTCGTAGCAGCAACAACAGTTGCATGGTTTCACACTTGGTA
TTATGTCACTTTGTATAATGCAATCGTTGGTTTCTTTTTTCCACTGTTTC
TCATCATCGTGGCCTATCTTTGCATATTTATCATCGTGAACAAAAGCCCT
CGAACGGTCGTTTCTACAGAAGACAGTTTTAAAATCAACTTAACAATATG
CATCATCGTTGGACTGTTTGTCGTTTGCTGGGCACCGCATTTCATTTTTT
CAGTTCTCCATCAACATTGTGAGGTTTGTTACAATCATTTACTTGACAAC
CTATGGTACCGCTCTTTATCAACTTGGCTGCATTATGCAAACAGTTGTGT
CAACCCGTTAGTGTACGGTATTGCTAACGCTCAATATCAAGAAGCTTTCA
AACACGTCCTCAAAAGACTGTGTCAATGTTGCTTCTTCAAAAAAGATACA
TTACAAGATACTGAGAGACTGCCATCACTTTACTTTCCGAATGGACATCA
GGAGAGATGTAATATGAATGATAAATTACGTGTAGAACTTGAGCCTGATG
AAAAGGAACTAGTGACGGGTGCAGTAGGTTACGATGAAGACCACTCCTAT
CCACCAGGAGATTACAGAGCATTGCCAATATTTCCAGCAGGTCACAGGAA
CAGACGGTGGACATCAGATACTTCAACTACAACTGAAACATTTCTTTCGA
CTTCACTCATGGAAACACCCATTATGGAAGACGAGCATGCTCAAACTGCA
CTTATCATTCCCACTGTATATATTCATCATTAATTCAAAGTTATTCTTAA
TCTATGAAAATAACCATGGAATCAACAACAACACTTCTAAAATTTAGAAA
CTTATATTTAGATTAGATAGAAACTTTTTTTATAGTTAAAATAGGCTTTT
ATATTGAACTATTTTTTATGGTCCAGCAGCGGGGCCAGCAGTTTCATTTT
TTAATTTCAGTTAATGTTAAAAGTGACTAAATCCGTGAAGAAAACTTGTA
TAAATTATATTACCTTTAATCCAACACACAGGCAGACTTGATTTTCAACA
TGATTTCTTTTAACTGCTGTAAATTTGTTGGAGGATCCGGTTCATAAGTC
GAACACGA

Coding sequence (CDS) from alignment at scaffold_224:35075..38032-

>TCONS_00053034 ID=TCONS_00053034|Name=TCONS_00053034|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_224:35075..38032- (Clytia hemisphaerica)
ATGGAAGAAAGCAGCGCAGAATACAAAATCCTTGCTTCAGCAGGGATCAT
GGTGCTGATACTACTATCGTTATTTGGAAATATATTAGTTTGTTGTGCAG
TCTATCATTCAAGGAACCTTCGAGCTCGCGTCAATATTTTAATCGTATCG
TTAGCAGTATCAGATATCCTCATTGCTACCATCTCCATGCCGCTATGGAT
GAACCTTATACTAACAAACTACCGCAACATGTCTCATCAAGCAACTATTC
GCATGCTAGAGTTCTCAATGTTCGTAGATATACTGGGTGGTATAGCATCC
ATTGGAAATTTGGTCGCAATAAGTTATGAGCGACTGTGGTCGGTCTTTTC
ACCTTTGAACCATCGACGATATCTAACAAATTTTACACTTGGAATTATAG
TGGCCTGTGTTTGGGCTTATGCAATTTTCGTAGCAGCAACAACAGTTGCA
TGGTTTCACACTTGGTATTATGTCACTTTGTATAATGCAATCGTTGGTTT
CTTTTTTCCACTGTTTCTCATCATCGTGGCCTATCTTTGCATATTTATCA
TCGTGAACAAAAGCCCTCGAACGGTCGTTTCTACAGAAGACAGTTTTAAA
ATCAACTTAACAATATGCATCATCGTTGGACTGTTTGTCGTTTGCTGGGC
ACCGCATTTCATTTTTTCAGTTCTCCATCAACATTGTGAGGTTTGTTACA
ATCATTTACTTGACAACCTATGGTACCGCTCTTTATCAACTTGGCTGCAT
TATGCAAACAGTTGTGTCAACCCGTTAGTGTACGGTATTGCTAACGCTCA
ATATCAAGAAGCTTTCAAACACGTCCTCAAAAGACTGTGTCAATGTTGCT
TCTTCAAAAAAGATACATTACAAGATACTGAGAGACTGCCATCACTTTAC
TTTCCGAATGGACATCAGGAGAGATGTAATATGAATGATAAATTACGTGT
AGAACTTGAGCCTGATGAAAAGGAACTAGTGACGGGTGCAGTAGGTTACG
ATGAAGACCACTCCTATCCACCAGGAGATTACAGAGCATTGCCAATATTT
CCAGCAGGTCACAGGAACAGACGGTGGACATCAGATACTTCAACTACAAC
TGAAACATTTCTTTCGACTTCACTCATGGAAACACCCATTATGGAAGACG
AGCATGCTCAAACTGCACTTATCATTCCCACTGTATATATTCATCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033493XLOC_033493Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
7 transmembrane proteinTCONS_00053034-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053034-exon-scaffold_224-1575043694:37840..38032TCONS_00053034-exon-scaffold_224-1575043694:37840..38032Clytia hemisphaericaexon
TCONS_00053034-exon-scaffold_224-1575043694:35075..36617TCONS_00053034-exon-scaffold_224-1575043694:35075..36617Clytia hemisphaericaexon
TCONS_00053034-exon-scaffold_224-1510915933:37840..38032TCONS_00053034-exon-scaffold_224-1510915933:37840..38032Clytia hemisphaericaexon
TCONS_00053034-exon-scaffold_224-1510915933:35075..36617TCONS_00053034-exon-scaffold_224-1510915933:35075..36617Clytia hemisphaericaexon
TCONS_00053034-exon-scaffold_224-1491911889:37840..38032TCONS_00053034-exon-scaffold_224-1491911889:37840..38032Clytia hemisphaericaexon
TCONS_00053034-exon-scaffold_224-1491911889:35075..36617TCONS_00053034-exon-scaffold_224-1491911889:35075..36617Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:35075..38032 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0232336	0.0679693	0.0789189	0.128683	2.94519	2.72347	4.33122	5.39713	2.44732	2.83739	2.94235	1.8104	11.3108	8.42468	5.83123	7.97091	10.0288	10.3686	8.37257	7.13309	10.805	10.0914	4.209	6.41801	7.55831	7.63612	5.00169	4.62395	7.47838	9.58979
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00053034 vs. Swiss-Prot (Human)
Match: DRD1 (D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.640e-21
Identity = 94/375 (25.07%), Postives = 163/375 (43.47%), Query Frame = 2 
Query:  287 GNILVCCAVYHSRNLRARV-NILIVSLAVSDILIATISMPLWMNLILTNYRNMSHQATIRMLEFSMFVDILGGIASIGNLVAISYERLWSVFSPLNHRRYLTNFTLGIIVACVWAYAIFVA--ATTVAWFH-----------TWYYVTLYN-------------AIVGFFFPLFLIIVAYLCIFIIVNKSPRTVVS-------------------------TEDSFKINL--------TICIIVGLFVVCWAPHFIFSVLHQHCEVCYNH--LLDNLWYRSLSTWLHYANSCVNPLVYGIANAQYQEAFKHVLK--RLCQCCFFKKDTLQDTERLPSLYFPNGHQERCNMNDKLRVELEPDEKELVTGAVGYDED 1219
            GN LVC AV   R+LR++V N  ++SLAVSD+L+A + MP      +  +        I +       DI+   ASI NL  IS +R W++ SP  + R +T     I+++  W  ++ ++     ++W             T    T+ N             +++ F+ P+ ++IV Y  I+ I  K  R + +                          E SFK++         T+ +I+G+FV CW P FI + +   C         +D+  +  +  W  +ANS +NP++Y   NA +++AF  +L   RLC       +T+       ++ F + H+ R +++ +  +        L+  AVG  ED
Sbjct:   40 GNTLVCAAVIRFRHLRSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPFGSFCNIWVA-----FDIMCSTASILNLCVISVDRYWAISSPFRYERKMTPKAAFILISVAWTLSVLISFIPVQLSWHKAKPTSPSDGNATSLAETIDNCDSSLSRTYAISSSVISFYIPVAIMIVTYTRIYRIAQKQIRRIAALERAAVHAKNCQTTTGNGKPVECSQPESSFKMSFKRETKVLKTLSVIMGVFVCCWLPFFILNCILPFCGSGETQPFCIDSNTF-DVFVWFGWANSSLNPIIYAF-NADFRKAFSTLLGCYRLCPATNNAIETVSINNNGAAM-FSSHHEPRGSISKECNLVY------LIPHAVGSSED 400
The following BLAST results are available for this feature:
BLAST of TCONS_00053034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DRD11.640e-2125.07D(1A) dopamine receptor OS=Homo sapiens GN=DRD1 PE... [more]
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