TCONS_00053032 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053032
Unique NameTCONS_00053032
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1270

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053032 ID=TCONS_00053032|Name=TCONS_00053032|organism=Clytia hemisphaerica|type=transcript|length=1270bp
NGTCATTTCAATTCTACGAGCGAATTAATCGAGCTTTCGATGGAAGTGTC
AAGAAATTGAACACGTTGTACGTGAGCAACCCTTGTCACAATAAAGAATG
TTTAAAAGAGACTTCTCAACAATACAACCCGCTGGACGATGAAATGTTTG
TTCAAAGAAGGCTGGCTGGACCATGTCCTTTCAACTTGAAACAAGTCTCT
ACAAATGGTCCGACTGGGATTCTTCTCTCTACCCTAAAAAGAAAGATGAA
TTTGGATTTCGATTATGACCAAGCATTGACTCGAGCGCTTGGTAAAAGAA
CCACTCTGGCAAAGGCGGTGAACAATGGACTTGTGTTTGTGTTGTACCAC
CCAGAGATTGACCACATCACCGCATCTTCTCCCTTCAGTGATCCTGCACA
GGAAAGGACGTTTCGCAAAATGAACAATCCCATTGTTTTCTTCATACTGA
CAGATGACGgctttttgaaaatagtttccATTCAAAGGGACAGTGAGAAA
GATAGTGAAGTCCTGCAGCCGATAGAGAGTGACCCGGAGGAATGGCTGAA
AGTCAAAGGTGATGCTGAAATGGCGGACTCCAATTACTGTCAAGGTTTTT
ACCATAGTGGTAAGATACACTTAGTAAGCACCATTTACTGTTTGGCATAC
CGAAGACACATCGATAAAAACCATCCGCTTTATGACTTCTTCTTGTACCA
TTGTGAGGGTACTGTACCGCACATTTCTTTGGTTTATCACACTTTGCTGA
CGTCAAATGAACGATCAGATGCGTCATTAGGTATGGGTCATCAAGGATTT
TTGCAATTAGGAACCAAAGCGTTTAACAGTAGAATGTATGGTGAACTTGA
TCTCCCATTCTTTTTAAAGCGAAAAGGCTTGGATAACAAAAGAATCAAGT
ATTATCCCTTTCGAGATGATGCTGAGGTACTTTGGGAGGAGCTGGCAGGG
TTTACTAACGACGTCATCAGCGAAATCTACAAAACTGATGACGAGGTTTC
CCAAGACCCTTCCCTACAATCTTTCGCAACAGAATTGTCATCTAAAGATG
CCGGTAATATGGCTGGATTTCCGACATATTTTGAAAGCAAACAATCAATA
CGATTGTTTCTTTTGAGATTTCTTTGGTTCAATGTCATCCATACAAGTTT
GAACTATCCATTAAATATGCACAGTCAAACGTTCAGTCCTACAAAGTCCT
ATCAAAACATACAAAGAGAGCCATTCTCAACTTATCTTCAAACGTTACCT
GATTTGTACACAGCCGTTGT
Run BLAST on NCBI

transcript from alignment at scaffold_224:94660..100121+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053032 ID=TCONS_00053032|Name=TCONS_00053032|organism=Clytia hemisphaerica|type=transcript|length=5462bp|location=Sequence derived from alignment at scaffold_224:94660..100121+ (Clytia hemisphaerica)
NGTCATTTCAATTCTACGAGCGAATTAATCGAGCTTTCGATGGAAGTGTC
AAGGTAAACTACTGTTCTTTGCATTCACCCAGCTTTCCAATTTACACTAG
TTATACATGGTTTACCTTCTTAAAAGCGTAAACAattctactttaatggg
ataaattttcgcggggattaattttcgcggatttcgcggatttgggtgtc
atccgcgaaaataagtcccattggaaatttgaaaaaggcccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNccaatagtgccatccgcgaaaattaatccccgcgaa
atcttaaaatttcgcggatgagctcaaccgcgaaatttaatccccgcgaa
aatttatcccattaatcTTGCTTATCTTTGCTTTGGTAGAAATTGAACAC
GTTGTACGTGAGCAACCCTTGTCACAATAAAGAATGTTTAAAAGAGACTT
CTCAACAATACAACCCGCTGGACGATGAAATGTTTGTTCAAAGAAGGCTG
GCTGGACCATGTCCTTTCAACTTGAAACAAGTCTCTACAAATGGTCAgtt
cttattttctcattctcacgGTCGAATCATTATGGAGAAAACTCAGTAGA
AAAATTACTTACAAACAAGGTtctttaattcgattttcaagggcaCCTTT
ATCGAATACAGGAGCGTGTCGAATAGTAGGGAGTTTCTCTAATCTATTAA
AACGAGGAAATTTTAGACTTTAGATTGATTCGGAGATAATTTGGACAAAT
ATTGAAGGTCTATCTATCACCAGCCGGGGAAAGAGAGATTGCAATTTATT
TGTGATTCACTGTATTTCTCAACTAAATCTACTACTAGATTATTAGAATT
CGATAATTTTTTCCAGGTCCGACTGGGATTCTTCTCTCTACCCTAAAAAG
AAAGATGAATTTGGATTTCGATTATGACCAAGCATTGACTCGAGCGCTTG
GTAAAAGAACCACTCTGGCAAAGGTAAATAAATAGAAGTGATAAAAATTG
TCCATAGGTTTTATCTGGTAGAATTGTAAAACTACCTGAAAGAAAATGGT
ATTGTGAAGAAAGTTAAAAGGAAACTTGGAACATGTTACCAATCACCATA
AAAAATTAgttcttgccaaaattagttccattAATCACAAACAAATTACA
ATCTCACTTTTTCCGGCTGGTGATAGGTATAGTAAATTCATTTTGGTCAG
GTTAGGTTATCTGGTTCCGATAAATGACCTCTAAAAGTGGTGGATTTAGA
CGAAAACACAGACCGTTCTGGTTATTTTAAGGCAATCCTGATCAGGGGCT
TTGCAGGCTACCTCATATCTTCCTccgttttgagcgtaaaactcctaccc
TTTGTGGATATTATTATTGATGTCGGCTAATGCACTCCGTTTAGGCGGTG
AACAATGGACTTGTGTTTGTGTTGTACCACCCAGAGATTGACCACATCAC
CGCATCTTCTCCCTTCAGTGATCCTGCACAGGAAAGGACGTTTCGCAAAA
TGAACAATCCCATTGTTTTCTTCATACTGACAGATGACGgctttttgaaa
atagtttccATTCAAAGGGACAGTGAGAAAGGTATCTTGATTCGTTTTAA
CCATGGAGGtatataaagtaaaacaggAGATGTATGTTATTATAACCAaa
ctcgccctacgattaaaaaagttacgaggtTTGCATATATcccatatatc
gtgcatttttaatgtgctcttttaaggccggtctccactttcgcgcgaca
tgagcgaaaactttttgacgtttttgtaaggtcatcggtcgattgaaaaa
tgaagcaattccattggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgcgacatgagcgaaaactttttgacgtttttgtaaggtc
attggtcgattgaaaaatgaagcaattccattggtcgaaattgacgtaat
ggatgaaaaaattagaacttccttcaactttttttttgttcgcgcgaaac
ttttttatgacgtaatcttttctttaggcaaaaaaggttaagaaaaaaac
tgtcgcccatttcgcgcgaaaacTTTATCCGTTGGTTAAATCTTTTTGGG
TCATTTCAGTGTTAAAATTaaatgagacgagattcattgtttctgacatc
gaTGTAATAAagtatttttactaaaaatagcctacaaacttggcaatcct
ttaCAACAAATGGAGAGAATAAAGTTTTCTTCAAAGTAAACCCTGTTGCT
TTATACTTTCCTCTAAATTTTTCCAGCGcctttttgtctaaaaattgagt
ctgaaattgcgtttgcttataaagaactttccATTTTCTGGCttaagaaa
gtatttttttcaaaacaaaatttcacgGTTAACAAAATGGAACAGAAACT
TTTTTCGTTgtgagcttagaatttcttttgatacatttcatAAGAGAAAT
CAAAAGACCAATTACTGAcaaattcaactcctgtttttctttatacttcG
ATGTTTGTTATACTTTCTTCTTCCTTCCCAATAATTTCCCAACTTATTTC
TTGCTTCAGTTTTTATTCTTCTGACACCTGTACTCATCAATTGTCCCGGT
ATCCTAATTATACTAATTTGAGGTTACAAATTATACCAGCATCGACCCTT
ACTCTTAGGTTACCAAATAAATCAACACccttttttcttatctttttgat
tacctttttaatttttactgGTTTTAACTAGATAGTGAAGTCCTGCAGCC
GATAGAGAGTGACCCGGAGGAATGGCTGAAAGTCAAAGGTGATGCTGAAA
TGGCGGACTCCAATTACTGTCAAGGTTTTTACCATAGTGGTAAGATACAC
TTAGTAAGCACCATTTACTGTTTGGCATACCGAAGACACATCGATAAAAA
CCATCCGCTTTATGACTTCTTCTTGTACCATTGTGAGGGTACTGTACCGC
ACATTTCTTTGGTTTATCACACTTTGCTGACGTCAAATGAACGATCAGAT
GCGTCATTAGGTATGGGTCATCAAGGATTTTTGCAATTAGGAACCAAAGC
GTTTAACAGTAGAATGTATGGTGAACTTGATCTCCCATTCTTTTTAAAGG
TAATTATTTCTTTCGATTCAAATGATTTGAATCAGATGATGATGTTTTAT
GCTTTTTTCGATGATTAAGCTGACTGCAGACCTTCTTCTAATTTTACTTT
CACCCTTTCTACTTNATTTTTTCGATGACTAAGCTGACTGCAGACCTTCT
TCTAATTTTACTTTCACCCTTTCTACTTTCGTATtggatggaaaaaataa
aataaatcataTCAGACGCAAGCAACCTTTATTATCTTTGTCTTTTTTCA
GCGAAAAGGCTTGGATAACAAAAGAATCAAGTATTATCCCTTTCGAGATG
ATGCTGAGGTACTTTGGGAGGAGCTGGCAGGGTTTACTAACGACGTCATC
AGCGAGTAAGTTTTTGTTTGATACCTTTACAATTTAAATGTCACATTTTC
GTTTGGCATAGTGCTGAAATCTACTTTTCGGTGTTAGAACATGTCGTAAA
AGCAGTGTTGAAAGTAGGTACAGTAGAAATCATTGGATAGTTTacttttc
atttaattttctgGCTTACTCTTCTGTAcagaattcagtcaaatcagCTA
CAGTATATCAACAGTTAAGGTATTAACGAGGTTAATGACTATAGTGAACC
ACAATCGAGCTATTAAAAAGGAAAGTGGCTTCATTGGTTTTATAGAATCT
ACAAAACTGATGACGAGGTTTCCCAAGACCCTTCCCTACAATCTTTCGCA
ACAGAATTGTCATCTAAAGATGCCGGTAATGTAAGTGCgccatttttcag
tttttttctcgTACGTTTAGCCGTGATTTTAAAGATTTGTTccattttct
tgtatttttaaaggagaaTATCATTCTTTTATCATCAACCTGAAAAATTT
AAGCCATCTAATTGACTAGAGAAGCAATATTTCCAGTATTTCATATTTAT
ACCTAAAACTACGAGACCTCTTCAACATGAGGGGTGTGTAAGCGAGAGGT
CACAATCTGTAGAATTGTTTCTCTAATATAGTTGATCTAATCGTATAAAA
TAGAATATGATGAAGTGTTTTTGCTCAACAATATGCGTTTCTGTAAGGGG
TCCCTTAGTGCAAAGTGAGCAGAAGTAAATGCATATTTTCTCACTCTGAA
AACTATTTGACGACGCATTTCTATCGAAAGATTtccaaacaaaaaatatt
tttcagatttcGTTTTTTAAGACGGAAACAAGTATgtctcaaaaattata
aaaaatttaaaaaatttacttaAGGTAAAACAATCTTCTTTAATTTTCAG
ATGGCTGGATTTCCGACATATTTTGAAAGCAAACAATCAATACGATTGTT
TCTTTTGAGATTTCTTTGGTTCAATGTCATCCATACAAGTTTGAACTATC
CATTAAATATGCACAGTCAAACGTTCAGTCCTACAAAGTCCTATCAAAAC
ATACAAAGAGAGCCATTCTCAACTTATCTTCAAACGTTACCTGATTTGTA
CACAGCCGTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033492XLOC_033492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053032-exon-scaffold_224-1491911889:94660..94712TCONS_00053032-exon-scaffold_224-1491911889:94660..94712Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:94660..94712TCONS_00053032-exon-scaffold_224-1510915933:94660..94712Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:94660..94712TCONS_00053032-exon-scaffold_224-1575043694:94660..94712Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:95699..95852TCONS_00053032-exon-scaffold_224-1491911889:95699..95852Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:95699..95852TCONS_00053032-exon-scaffold_224-1510915933:95699..95852Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:95699..95852TCONS_00053032-exon-scaffold_224-1575043694:95699..95852Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:96176..96282TCONS_00053032-exon-scaffold_224-1491911889:96176..96282Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:96176..96282TCONS_00053032-exon-scaffold_224-1510915933:96176..96282Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:96176..96282TCONS_00053032-exon-scaffold_224-1575043694:96176..96282Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:96704..96890TCONS_00053032-exon-scaffold_224-1491911889:96704..96890Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:96704..96890TCONS_00053032-exon-scaffold_224-1510915933:96704..96890Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:96704..96890TCONS_00053032-exon-scaffold_224-1575043694:96704..96890Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:98291..98658TCONS_00053032-exon-scaffold_224-1491911889:98291..98658Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:98291..98658TCONS_00053032-exon-scaffold_224-1510915933:98291..98658Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:98291..98658TCONS_00053032-exon-scaffold_224-1575043694:98291..98658Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:98911..99014TCONS_00053032-exon-scaffold_224-1491911889:98911..99014Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:98911..99014TCONS_00053032-exon-scaffold_224-1510915933:98911..99014Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:98911..99014TCONS_00053032-exon-scaffold_224-1575043694:98911..99014Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:99305..99389TCONS_00053032-exon-scaffold_224-1491911889:99305..99389Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:99305..99389TCONS_00053032-exon-scaffold_224-1510915933:99305..99389Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:99305..99389TCONS_00053032-exon-scaffold_224-1575043694:99305..99389Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1491911889:99910..100121TCONS_00053032-exon-scaffold_224-1491911889:99910..100121Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1510915933:99910..100121TCONS_00053032-exon-scaffold_224-1510915933:99910..100121Clytia hemisphaericaexon
TCONS_00053032-exon-scaffold_224-1575043694:99910..100121TCONS_00053032-exon-scaffold_224-1575043694:99910..100121Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:94660..100121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.201037	0.258568	0.12832	1.57893	0	0.356336	0	1.27855	0	1.24342	0.623003	0	0	8.31415e-06	0.137322	0	1.14681	0	0	0	0	3.39853	0.246586	0	0	0	0
Blast
[Close]
BLAST of TCONS_00053032 vs. Swiss-Prot (Human)
Match: LOX5 (Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALOX5 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.926e-21
Identity = 72/296 (24.32%), Postives = 136/296 (45.95%), Query Frame = 3 
Query:  285 ALGKRTTLAKAVNNGLVFVLYHPEIDHITASSPFSDPAQERTFRKMNNPIVFFILTDDGFLKIVSIQRDSEKDSEVLQPIESDPE-EWLKVKGDAEMADSNYCQGFYHSGKIHLVSTIYCLAYRRHIDKNHPLYDFFLYHCEGTVPHISLVYHTLLTSNERSDASLGMGHQGFLQLGTKAFNSRMYGELDLPFFLKRKGLDNKR-IKYYPFRDDAEVLWEELAGFTNDVISEIYKTDDEVSQDPSLQSFATE--LSSKDAGNMAGFPTYFESKQSIRLFLLRFLW-FNVIHTSLNY 1157
            +L ++ +L + V  G +F++    +D I A+   +DP    T + +  PI          +  ++IQ +     E    + SD + +WL  K     +D +  Q   H  + HLVS ++ +A  R +   HP++   + H   T+   +     L+      D +   G  G +Q+  +A     Y  L  P  +K +G+++K  I YY +RDD  ++WE +  FT +V+   Y+ D  V +DP LQ F  +  +        +GFP   +S++ +  +L   ++  +  H ++N+
Sbjct:  266 SLERQLSLEQEVQQGNIFIVDFELLDGIDANK--TDPC---TLQFLAAPICLLYKNLANKIVPIAIQLNQIPGDENPIFLPSDAKYDWLLAKIWVRSSDFHVHQTITHLLRTHLVSEVFGIAMYRQLPAVHPIFKLLVAHVRFTIAINTKAREQLICECGLFDKANATGGGGHVQMVQRAMKDLTYASLCFPEAIKARGMESKEDIPYYFYRDDGLLVWEAIRTFTAEVVDIYYEGDQVVEEDPELQDFVNDVYVYGMRGRKSSGFPKSVKSREQLSEYLTVVIFTASAQHAAVNF 556
The following BLAST results are available for this feature:
BLAST of TCONS_00053032 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LOX54.926e-2124.32Arachidonate 5-lipoxygenase OS=Homo sapiens GN=ALO... [more]
back to top