TCONS_00053024 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00053024
Unique Name	TCONS_00053024
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1327

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_224:21853..26348+
coding sequence from alignment at scaffold_224:21853..26348+

transcript sequence

>TCONS_00053024 ID=TCONS_00053024|Name=TCONS_00053024|organism=Clytia hemisphaerica|type=transcript|length=1327bp
TTTGCATTTATGGTTTGTGACGTGAGAATTTTGAAGCCACTACAGTGCTg
caaacattccattgaaagattttcgaacgtttgaCAAACTGATCAAATCG
AACAAGATAAAGGCGACAAAAGTAATTTcttgttttggttttggtggATG
GTGATTTCCATGATTTATCTTGATAAAGGCGCTCTATACTAGTCATATTA
CAGTGAAAACAGTCAAAATACCAACGATATCTGCGTTAAAAAATGAAAGC
TTCGATACTAGTGGTATTGCTGATTTCGATCATTGCTTGCCAATTGGTGG
ATGCAAAGAAGGAGAAGAGGAAGCCCCaaaatgataaagaaaaaaaactc
ttcAAAGAGCAAATTGAAAAACGCCAGAAAGATGCAAAGAAGAAATTTAA
AGATATGAAGAATTCCGATCAGGTGGACCGTATGATGGGCAATTCTATCA
TGAGAGCAGACAAAAAAGGAGGAAAACTAGCTATTCAAAGAAAAGGACAA
TATTTCGttatgaaaatcaaagaaattgtaGCAAGACATTCAAATGAAAC
CGAGATCACAAAGACAAAgctaaaagatgtcaagttcaCAATCACTGGAG
ATAAGAATGATACGTCCACTTATGGTGTCCAAGCCGCTTATGTTCAAATG
GTCGGTCGATTACCAAATGGTGGGAATGTCACTCTCCAGCTATTCATGTT
CAAAGATGCTGGTAATGTCACAGGTGAAGATGGAAACGTTTATGAACTTG
TTGAAGGAGGAACCAAAGCGAATTTAAGAGTAGAGTGGCCAAACGAAGCT
GATCATCTGGACTTGGTGATTGCTGTCCAATGTGGGTTTGATGTGAAAAA
AGCCAAGAAAGCTATGAAGGCTATGAAAACACGTGGACGCAAAGGAATGA
AAAAGGCGATGAACAGACGTAATCCCGAAACATTCTCCGTCTGCTCCAAT
GCCCGAATGACCTTTTCACCAGCGTACAATACCAGTATGAGCGACAACAG
CACTAGTATGGACTACGACATGCCAACTGGTTATCCTAAATCAAAAGAGC
TATCCGGTGAAGGCGAATCCGAAATCGTTCTTCGATTTAACGGAACCAGA
ATTTTTTACGATCCAACTGTAGAAACAGGTGAAGATATTGGCGAAGAAGC
CGAATTTGAAGCTTCCAACAACGCCATCTCTCTACACACGCCTAACCTCA
TCATTGCGGTAGtattttcgatgatttttttaaaacttttattgtAATGC
AATATATGATAACGAGTTGAATGTTACTTGAACCTTAAACAATGCAATAC
TGAAATACAACAGACACAAATTCTAAA

Run BLAST on NCBI

protein sequence of TCONS_00053024-protein

>TCONS_00053024-protein ID=TCONS_00053024-protein|Name=TCONS_00053024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MKASILVVLLISIIACQLVDAKKEKRKPQNDKEKKLFKEQIEKRQKDAKK
KFKDMKNSDQVDRMMGNSIMRADKKGGKLAIQRKGQYFVMKIKEIVARHS
NETEITKTKLKDVKFTITGDKNDTSTYGVQAAYVQMVGRLPNGGNVTLQL
FMFKDAGNVTGEDGNVYELVEGGTKANLRVEWPNEADHLDLVIAVQCGFD
VKKAKKAMKAMKTRGRKGMKKAMNRRNPETFSVCSNARMTFSPAYNTSMS
DNSTSMDYDMPTGYPKSKELSGEGESEIVLRFNGTRIFYDPTVETGEDIG
EEAEFEASNNAISLHTPNLIIAVVFSMIFLKLLL

Run BLAST on NCBI

transcript from alignment at scaffold_224:21853..26348+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00053024 ID=TCONS_00053024|Name=TCONS_00053024|organism=Clytia hemisphaerica|type=transcript|length=4496bp|location=Sequence derived from alignment at scaffold_224:21853..26348+ (Clytia hemisphaerica)
TTTGCATTTATGGTTTGTGACGTGAGAATTTTGAAGCCACTACAGTGCTg
caaacattccattgaaagattttcgaacgtttgaCAAACTGATCAAATCG
AACAAGATAAAGGCGACAAAAGTAATTTcttgttttggttttggtggATG
GTGATTTCCATGATTTATCTTGATAAAGGCGCTCTATACTAGTCATATTA
CAGTGAAAACGTACGGGTAACACACGGGAACATAAATATGTTCGAGTTTA
GGAAACTTAGAAATattgagtaaggtttataatTGAACAGACGAGACAAC
TTGTTCGAGCTACAGAGGTTTgagtagtctagcaagctagacgactaatt
tatacatagtagaaataaagcaaaaagtaatgaatggaacaattttagtc
gtttagaaacctttgtgcactaactctaaacaaaagaaaagtgtcaatat
tgcaatttataattttttcctgctcaaaataattcttgagaaaagaaata
tgtgtggatttgtgtattgaaagttttttcatttgagttgatttcgttct
gagagtttgttgttgcttgataaattgttttctcgctacgcaagtttctg
cgtagctagcccctgtatctataaggctggaacaccggattcttccagtc
gtttatacaaacttaatcccgtattattattattagtattggtattatta
gtattacacgcataatcgtcagccgtgcaaaattactcgaatctgattgg
cttagaggagtgcgattaattgttaattgcactattaccactttttgcac
tcttcggcggggggacacttttgtccccttattcttttctctcccaagtc
ctgtgtcagagactttttttactatataataaaaaaacaaagacattttt
tttcttcaatataaaaaagaacaaagaaattttacgttacaatagcttct
tttaattgaaaacaaagaaaaattacactgcaatgttttctttttaaaca
aaagaaaaaaaggaggtttttgacgattactagtacttatAAACGACTCC
GGTCTAAGgtttgagttaaagagactgaaaggttttatttttacataagt
tagaacagcgtccgagattcagaaaaggctttaaaacaggttttcgtaGC
TATCCagctgtgagaaagatttttcctaaaaatgCTCCCAGCAAAATGCT
GATGTGACTTAGCActtagaccagcggccgaggtagtgaatCGTGCCACT
TCGTAGGGCGCCACTTAGATTTCAGACacgtatttcatatcaggacagtg
tctgtaTGTTATTATATTAttctgatataagcaaaaaattgtttatttcc
tctttctgaccaattttgtgccacatccgtgtcaattgaatgtgaaaaag
cttgtgaattgaaattgatgagtaagcaaacgatatctaAATTCATTTTT
AGGTTATCAGTCTAAACTCGAACTAGATTTAATACCTAATACATTTTGTG
AAAGTGTTGAGACTTACTTAgaaataattggcaatttacagttaaaaatg
ctCTGAAGTGAAATGGCTTTTTTTAGGGTTCATTTgataaattccatgat
ggtgatattctaaacatattcttaaattttttggcCAGTCTCgtgaatat
tcttaaaagtatattcttagaaaaaaagcgtgtaaccttaagggaactaa
ttgtTGCGTAACTAATTTTCGTTATAAAgctttttcacatgcacgtaaaa
ttttactttagaccttaTGGAAAATCGctcgtaaggctgtcttttgggaa
ttttccCGACTTTGGGAtggtggggaatttccctaagcttacgtatTGTT
TTAAGGCGTTATCTAGAGTTTGCttactttcaaaaagttttgaacggaaa
ggaaagtcacgtaagaccctcttaatcGACAAAAACTCTACATATTGTCG
GGGAAATTCTCATAAGACAGCATACGAACGATTTTccgtaaggtctaaag
taaaattttacgtacatgtgaaaaaagcttcaGAAACACGAGATAGAAGT
TATTGGTAAGACGAATTTCTATTTATCCAGAGTCAAAATACCAACGATAT
CTGCGTTAAAAAATGAAAGCTTCGATACTAGTGGTATTGCTGATTTCGAT
CATTGCTTGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGAAGCCCCaaa
atgataaagaaaaaaaactcttcAAAGAGCAAATTGAAAAACGCCAGAAA
GATGCAAAGAAGAAATTTAAAGATATGAAGAATTCCGATCAGGTGGACCG
TATGATGGGCAATTCTATCATGAGAGCAGACAAAAAAGGAGGAAAACTAG
CTATTCAAAGAAAAGGACAATATTTCGttatgaaaatcaaagaaattgta
GCAAGACATTCAAATGAAACCGAGGTACAGTTAACACAGATTTTTAGTCT
TATAAAATAAGCATATTGAAGAAATTTTCCGGGCCTAAATGTCGCCTTCT
ACCAAATAGCTTTGAATTTACGTCACACTTTCAGATAGAATCTAATTGAT
TTAGTCCCATGAAAATTTCACGGAGCTAGCTTGTTACAGTACCCTAAACT
CTATAGGTGTCAAGAAGCAGATTCACGTGTTGTTAGTGAGATCTGAAGCT
ATCAACGGATGGTCTGTTTTAACTCAATTAACTGAAACTCTTGGAAAACA
CTCCAATGCTTTATTTTAACTTTGTGGTATCCCGTGAAAGATTAGAAAGT
GCAAAAGATCTGGTTTCTATTTCCtatggtttttaaaaattttgcttttc
ttCTTTCACGTCACATCAGATCACAAAGACAAAgctaaaagatgtcaagt
tcaCAATCACTGGAGATAAGAATGATACGTCCACTTATGGTGTCCAAGCC
GCTTATGTTCAAATGGTCGGTCGATTACCAAATGGTGGGAATGTCACTCT
CCAGCTATTCATGTTCAAAGATGCTGGTAATGTCACAGGTGAAGATGGAA
ACGTTTATGAACTTGTTGAAGGAGGAACCAAAGCGAATTTAAGAGTGTAA
GTAGCTATACTGATAGAAAGCATAATATTCTTTATAGCGTGGCATTTTCA
AGTCGTGCATAAGGCCTATGATAACCAATAAGGTATAGTTGAAGACTACA
TTCGAATCCTCTATGTAGATttaaagccacttattttctACATAAGTTGT
GCGCCCTGCGTGTTTTTCATACAAACGCTAGATTAGATTATTTCCATCTC
CCTGGGTTTAAAAATTCTCTTAGTTTCTCCATTACCATATGACTCACAAT
TCTAACTTTACAATTAAAGGCCTTCCCTTATCCTGAGAACCCATCACCCT
GAATTAATATAATTGGGTCTTCCACTTTCACACCTTTACCAAAGTTGAGC
GCAATGCTTACCTGTAAGTTACAGGTTTTACATTGTCCGTAAAAGAATTG
AgctatttgaaaattttgaaaaaatttattcacTATGGTCATAGAGCCCT
TAAACATGAGAACTTTTTTTATCGACGCTTCCTCTCATTCTTCTCGAACG
TCCGAAACCTCCCCTTTGCTCTTACTCAAAGTATATTTTAGGTATCATTT
CTTTACATCTCTTTCAACCATATCATTCTTTAGAGAGTGGCCAAACGAAG
CTGATCATCTGGACTTGGTGATTGCTGTCCAATGTGGGTTTGATGTGAAA
AAAGCCAAGAAAGCTATGAAGGCTATGAAAACACGTGGACGCAAAGGAAT
GAAAAAGGCGATGAACAGACGTAATCCCGAAACATTCTCCGTCTGCTCCA
ATGCCCGAATGACCTTTTCACCAGCGGTAAATCataatgaaatttcttga
taCTTAATATTCTCATTTCATAAGTAGTTTTAAGTTTGATGAGTATTTTG
CTCCTAAACTCCAGAACGTCATGTTGCTAGTACAAAGAAGGCCTCTAAGC
TCTGATGATAAGAAATAAGAAAGGTTAAATATCTTATTGGACAGATAATA
GATACGAGTCCTTCTatgattgtttgattttcactttttagtCTTAAGTA
AAGCTAgctaaaatgaaaatgtaaagaACTTCTTACGACTCTAGTTATTC
ATTAAGATATCAACGCTTGCATTTTATGCTTCATCGATTTCAGTACAATA
CCAGTATGAGCGACAACAGCACTAGTATGGACTACGACATGCCAACTGGT
TATCCTAAATCAAAAGAGCTATCCGGTGAAGGCGAATCCGAAATCGTTCT
TCGATTTAACGGAACCAGAATTTTTTACGATCCAACTGTAGAAACAGGTG
AAGATATTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAACGCCATCTCT
CTACACACGCCTAACCTCATCATTGCGGTAGtattttcgatgattttttt
aaaacttttattgtAATGCAATATATGATAACGAGTTGAATGTTACTTGA
ACCTTAAACAATGCAATACTGAAATACAACAGACACAAATTCTAAA

Coding sequence (CDS) from alignment at scaffold_224:21853..26348+

>TCONS_00053024 ID=TCONS_00053024|Name=TCONS_00053024|organism=Clytia hemisphaerica|type=CDS|length=4020bp|location=Sequence derived from alignment at scaffold_224:21853..26348+ (Clytia hemisphaerica)
ATGAAAGCTTCGATACTAGTGGTATTGCTGATTTCGATCATTGCTTGCCA
ATTGGTGGATGCAAAGAAGGAGAAGAGGAAGCCCCaaaatgataaagaaa
aaaaactcttcAAAGAGCAAATTGAAAAACGCCAGAAAGATGCAAAGAAG
AAATTTAAAGATATGAAGAATTCCGATCAGGTGGACCGTATGATGGGCAA
TTCTATCATGAGAGCAGACAAAAAAGGAGGAAAACTAGCTATTCAAAGAA
AAGGACAATATTTCGttatgaaaatcaaagaaattgtaGCAAGACATTCA
AATGAAACCGAGATCACAAAGACAAAgctaaaagatgtcaagttcaCAAT
CACTGGAGATAAGAATGATACGTCCACTTATGGTGTCCAAGCCGCTTATG
TTCAAATGGTCGGTCGATTACCAAATGGTGGGAATGTCACTCTCCAGCTA
TTCATGTTCAAAGATGCTGGTAATGTCACAGGTGAAGATGGAAACGTTTA
TGAACTTGTTGAAGGAGGAACCAAAGCGAATTTAAGAGTAGAGTGGCCAA
ACGAAGCTGATCATCTGGACTTGGTGATTGCTGTCCAATGTGGGTTTGAT
GTGAAAAAAGCCAAGAAAGCTATGAAGGCTATGAAAACACGTGGACGCAA
AGGAATGAAAAAGGCGATGAACAGACGTAATCCCGAAACATTCTCCGTCT
GCTCCAATGCCCGAATGACCTTTTCACCAGCGTACAATACCAGTATGAGC
GACAACAGCACTAGTATGGACTACGACATGCCAACTGGTTATCCTAAATC
AAAAGAGCTATCCGGTGAAGGCGAATCCGAAATCGTTCTTCGATTTAACG
GAACCAGAATTTTTTACGATCCAACTGTAGAAACAGGTGAAGATATTGGC
GAAGAAGCCGAATTTGAAGCTTCCAACAACGCCATCTCTCTACACACGCC
TAACCTCATCATTGCGGTAGtattttcgatgatttttttaaaacttttat
tgtAAATGAAAGCTTCGATACTAGTGGTATTGCTGATTTCGATCATTGCT
TGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGAAGCCCCaaaatgataa
agaaaaaaaactcttcAAAGAGCAAATTGAAAAACGCCAGAAAGATGCAA
AGAAGAAATTTAAAGATATGAAGAATTCCGATCAGGTGGACCGTATGATG
GGCAATTCTATCATGAGAGCAGACAAAAAAGGAGGAAAACTAGCTATTCA
AAGAAAAGGACAATATTTCGttatgaaaatcaaagaaattgtaGCAAGAC
ATTCAAATGAAACCGAGATCACAAAGACAAAgctaaaagatgtcaagttc
aCAATCACTGGAGATAAGAATGATACGTCCACTTATGGTGTCCAAGCCGC
TTATGTTCAAATGGTCGGTCGATTACCAAATGGTGGGAATGTCACTCTCC
AGCTATTCATGTTCAAAGATGCTGGTAATGTCACAGGTGAAGATGGAAAC
GTTTATGAACTTGTTGAAGGAGGAACCAAAGCGAATTTAAGAGTAGAGTG
GCCAAACGAAGCTGATCATCTGGACTTGGTGATTGCTGTCCAATGTGGGT
TTGATGTGAAAAAAGCCAAGAAAGCTATGAAGGCTATGAAAACACGTGGA
CGCAAAGGAATGAAAAAGGCGATGAACAGACGTAATCCCGAAACATTCTC
CGTCTGCTCCAATGCCCGAATGACCTTTTCACCAGCGTACAATACCAGTA
TGAGCGACAACAGCACTAGTATGGACTACGACATGCCAACTGGTTATCCT
AAATCAAAAGAGCTATCCGGTGAAGGCGAATCCGAAATCGTTCTTCGATT
TAACGGAACCAGAATTTTTTACGATCCAACTGTAGAAACAGGTGAAGATA
TTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAACGCCATCTCTCTACAC
ACGCCTAACCTCATCATTGCGGTAGtattttcgatgatttttttaaaact
tttattgtAAATGAAAGCTTCGATACTAGTGGTATTGCTGATTTCGATCA
TTGCTTGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGAAGCCCCaaaat
gataaagaaaaaaaactcttcAAAGAGCAAATTGAAAAACGCCAGAAAGA
TGCAAAGAAGAAATTTAAAGATATGAAGAATTCCGATCAGGTGGACCGTA
TGATGGGCAATTCTATCATGAGAGCAGACAAAAAAGGAGGAAAACTAGCT
ATTCAAAGAAAAGGACAATATTTCGttatgaaaatcaaagaaattgtaGC
AAGACATTCAAATGAAACCGAGATCACAAAGACAAAgctaaaagatgtca
agttcaCAATCACTGGAGATAAGAATGATACGTCCACTTATGGTGTCCAA
GCCGCTTATGTTCAAATGGTCGGTCGATTACCAAATGGTGGGAATGTCAC
TCTCCAGCTATTCATGTTCAAAGATGCTGGTAATGTCACAGGTGAAGATG
GAAACGTTTATGAACTTGTTGAAGGAGGAACCAAAGCGAATTTAAGAGTA
GAGTGGCCAAACGAAGCTGATCATCTGGACTTGGTGATTGCTGTCCAATG
TGGGTTTGATGTGAAAAAAGCCAAGAAAGCTATGAAGGCTATGAAAACAC
GTGGACGCAAAGGAATGAAAAAGGCGATGAACAGACGTAATCCCGAAACA
TTCTCCGTCTGCTCCAATGCCCGAATGACCTTTTCACCAGCGTACAATAC
CAGTATGAGCGACAACAGCACTAGTATGGACTACGACATGCCAACTGGTT
ATCCTAAATCAAAAGAGCTATCCGGTGAAGGCGAATCCGAAATCGTTCTT
CGATTTAACGGAACCAGAATTTTTTACGATCCAACTGTAGAAACAGGTGA
AGATATTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAACGCCATCTCTC
TACACACGCCTAACCTCATCATTGCGGTAGtattttcgatgattttttta
aaacttttattgtAAATGAAAGCTTCGATACTAGTGGTATTGCTGATTTC
GATCATTGCTTGCCAATTGGTGGATGCAAAGAAGGAGAAGAGGAAGCCCC
aaaatgataaagaaaaaaaactcttcAAAGAGCAAATTGAAAAACGCCAG
AAAGATGCAAAGAAGAAATTTAAAGATATGAAGAATTCCGATCAGGTGGA
CCGTATGATGGGCAATTCTATCATGAGAGCAGACAAAAAAGGAGGAAAAC
TAGCTATTCAAAGAAAAGGACAATATTTCGttatgaaaatcaaagaaatt
gtaGCAAGACATTCAAATGAAACCGAGATCACAAAGACAAAgctaaaaga
tgtcaagttcaCAATCACTGGAGATAAGAATGATACGTCCACTTATGGTG
TCCAAGCCGCTTATGTTCAAATGGTCGGTCGATTACCAAATGGTGGGAAT
GTCACTCTCCAGCTATTCATGTTCAAAGATGCTGGTAATGTCACAGGTGA
AGATGGAAACGTTTATGAACTTGTTGAAGGAGGAACCAAAGCGAATTTAA
GAGTAGAGTGGCCAAACGAAGCTGATCATCTGGACTTGGTGATTGCTGTC
CAATGTGGGTTTGATGTGAAAAAAGCCAAGAAAGCTATGAAGGCTATGAA
AACACGTGGACGCAAAGGAATGAAAAAGGCGATGAACAGACGTAATCCCG
AAACATTCTCCGTCTGCTCCAATGCCCGAATGACCTTTTCACCAGCGTAC
AATACCAGTATGAGCGACAACAGCACTAGTATGGACTACGACATGCCAAC
TGGTTATCCTAAATCAAAAGAGCTATCCGGTGAAGGCGAATCCGAAATCG
TTCTTCGATTTAACGGAACCAGAATTTTTTACGATCCAACTGTAGAAACA
GGTGAAGATATTGGCGAAGAAGCCGAATTTGAAGCTTCCAACAACGCCAT
CTCTCTACACACGCCTAACCTCATCATTGCGGTAGtattttcgatgattt
ttttaaaacttttattgtAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033490	XLOC_033490	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00053024-protein	TCONS_00053024-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_224	supercontig	scaffold_224:21853..26348 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.44339	8.27318	4.25615	3.31499	0.000395874	0	4.82598	5.30028	10.3349	9.05524	7.3854	6.74877	0.45196	0.28983	0	0	0.688221	0.433421	0.0923321	0	0	0	2.66105	1.76178	413.163	217.397	0	0	0	0.315766

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00053024 vs. Swiss-Prot (Human)

BLAST of TCONS_00053024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00053024 (transcript) - C. hemisphaerica