TCONS_00053020 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053020
Unique NameTCONS_00053020
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053020 ID=TCONS_00053020|Name=TCONS_00053020|organism=Clytia hemisphaerica|type=transcript|length=298bp
ATTTCGAATATCATATTCATTCAAGACGACCCATGTCCAATTTTGACATG
GAATGCTGATGACCATGGATTATGTGAAGTGGATTTGTTTCTGTCTTTTC
CACAAAACGATAACACAACAAAGATCGCCAAAGTTCCCGTCGCGCAGAAA
TCCTTTCAAAACTGCAATATTACGACTAATGCAACTAACGTTAGCTACAA
GACAATTGTGTACCTATTAATCGATGGAAAAAGAATTCAGACAAGCTCCA
GTAATATAACTTTGGCAAATGTTGGACTGATGACAACAACAACGACTA
Run BLAST on NCBI

protein sequence of TCONS_00053020-protein

>TCONS_00053020-protein ID=TCONS_00053020-protein|Name=TCONS_00053020-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
ISNIIFIQDDPCPILTWNADDHGLCEVDLFLSFPQNDNTTKIAKVPVAQK
SFQNCNITTNATNVSYKTIVYLLIDGKRIQTSSSNITLANVGLMTTTTT
Run BLAST on NCBI

transcript from alignment at scaffold_223:84994..85291

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053020 ID=TCONS_00053020|Name=TCONS_00053020|organism=Clytia hemisphaerica|type=transcript|length=298bp|location=Sequence derived from alignment at scaffold_223:84994..85291 (Clytia hemisphaerica)
TAGTCGTTGTTGTTGTCATCAGTCCAACATTTGCCAAAGTTATATTACTG
GAGCTTGTCTGAATTCTTTTTCCATCGATTAATAGGTACACAATTGTCTT
GTAGCTAACGTTAGTTGCATTAGTCGTAATATTGCAGTTTTGAAAGGATT
TCTGCGCGACGGGAACTTTGGCGATCTTTGTTGTGTTATCGTTTTGTGGA
AAAGACAGAAACAAATCCACTTCACATAATCCATGGTCATCAGCATTCCA
TGTCAAAATTGGACATGGGTCGTCTTGAATGAATATGATATTCGAAAT

Coding sequence (CDS) from alignment at scaffold_223:84994..85291

>TCONS_00053020 ID=TCONS_00053020|Name=TCONS_00053020|organism=Clytia hemisphaerica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_223:84994..85291 (Clytia hemisphaerica)
AGTCGTTGTTGTTGTCATCAGTCCAACATTTGCCAAAGTTATATTACTGG
AGCTTGTCTGAATTCTTTTTCCATCGATTAATAGGTACACAATTGTCTTG
TAGCTAACGTTAGTTGCATTAGTCGTAATATTGCAGTTTTGAAAGGATTT
CTGCGCGACGGGAACTTTGGCGATCTTTGTTGTGTTATCGTTTTGTGGAA
AAGACAGAAACAAATCCACTTCACATAATCCATGGTCATCAGCATTCCAT
GTCAAAATTGGACATGGGTCGTCTTGAATGAATATGATATTCGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033486XLOC_033486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053020-exon-scaffold_223-1491911889:84994..85291TCONS_00053020-exon-scaffold_223-1491911889:84994..85291Clytia hemisphaericaexon
TCONS_00053020-exon-scaffold_223-1510915933:84994..85291TCONS_00053020-exon-scaffold_223-1510915933:84994..85291Clytia hemisphaericaexon
TCONS_00053020-exon-scaffold_223-1575043694:84994..85291TCONS_00053020-exon-scaffold_223-1575043694:84994..85291Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053020-proteinTCONS_00053020-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:84994..85291 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.488759	0.541451	0	0.619287	1.07328	1.27218	4.09287	6.22651	9.26758	7.94626	4.86437	7.80585	19.8563	38.098	29.0157	37.0154	6.15095	9.54201	28.9373	33.1163	5.42744	6.27659	5.09457	5.22214	5.5542	7.62614	5.71781	5.5288	13.0803	18.6757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053020 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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