TCONS_00053017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053017
Unique NameTCONS_00053017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053017 ID=TCONS_00053017|Name=TCONS_00053017|organism=Clytia hemisphaerica|type=transcript|length=1613bp
TTTGTCATAAATTTCCCAATCATTTGGTTCAAAATAAAAGAGCTTGAACT
AATCTGAAAATGCATTTTTGATTCAATCTTctgaatttgtttgaaaaatt
tgttcgatgtttagaaatattcaaaacatttgacaaacacaaaagtttaa
aattgtaCTGAGTAACATGATTATTGCCTTTTTGTTTATTGCCAAAAGAT
TGAAATGTTCAAAGtttgtacaaaataaaaattatatattatttccAATT
TCGGCAAGTTTATTATCAAATGTAGTCCAAAATGTACATAATGGCATTGt
gtaaaaatgttgaaaaatattcccaagcgccaaaatgataaaaattagta
GTCACCACTCCCATTCAAACGTTCAACACTGTCAGTCATTGGTATCAGGT
AGTTTCACTCAGGCGTCAAAAGATACGTACAGAGTAATACAAGAATATTT
CAGTCCATTATTTCAACGTTCCCCAAATATCATTCAGTCATTATCATTTA
ATATAAAGCTATTCAAATccatatctcattatatacaTTTCACGTCAATC
CATTCTTCACTTGGGTAAGGCATCAGGTTACGTACACAAAGTTTTACAAG
GACATAAAAAGTAAAGCCAAGTTCAGTTGTAGGTATACCCGGATTATAAT
CTTATAATACTttattatagacctttttttaaagaggcaaccctgttgaa
taattatgtagtccagcaaaataacaatgatatagccatgcataattatt
aatatgcatgaaacagtaattatgcatggctgtatcattgtttttatgct
ggactacataattattcaacagggttgcctctttaaaaaaaggtctattc
aatcCATCCATATAAgtccatttcattttatatgCCATTAAAACTCCCAA
CTTCCAATTCATCCAAACCAGATCGTGAACACAATTGGCATTCAGCCATT
GAGTGCTAGCTGACATCAGTACCAGAGATATAATTATACGTAGACATagg
accttttacatagttctTCTGTCCTTATGTCTTTATTCATTCAGCAGCAG
ACAGTAGAAAATCAGCATCAGATTTGTTTAGTTCCCTCTATTATAGTGTT
CGTTAGCAGTATGAAATTCCAATGGCATTTTGCTTGATCAGaagaacatt
cttcatattcaatgtgaaagaaatcaagaaagtgACAAGTGATCCtcttg
catattctgttttgcTTTGGAGAAACAGCTTGGCTTAAACATTTTGACAG
TCTGGTTGTGGTTGTGGctagtttgtttttgtttttgttgaaaaatgata
taaacCATCCGTAGTTCGGACAAGATtatttttcctatccgtcattaTGG
GACTTTGCTAATCAACATCCGATTCGCGTACACCCTtgaaatcactttcg
ttttctatgtgtaccagggcttatatcccccgtcaacgcgtcatcagaat
catcaatagcgtaagggggttaaataagccatggagtcgagggtgccata
cagggctgagctggttcccaatggtcctaaacctcgtgggacactccctt
gcaatggattagacccattgaagtccagcgaagggggcagaaccgACGAA
TTTTCACTaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_223:55021..56633

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053017 ID=TCONS_00053017|Name=TCONS_00053017|organism=Clytia hemisphaerica|type=transcript|length=1613bp|location=Sequence derived from alignment at scaffold_223:55021..56633 (Clytia hemisphaerica)
attttAGTGAAAATTCGTcggttctgcccccttcgctggacttcaatggg tctaatccattgcaagggagtgtcccacgaggtttaggaccattgggaac cagctcagccctgtatggcaccctcgactccatggcttatttaaccccct tacgctattgatgattctgatgacgcgttgacgggggatataagccctgg tacacatagaaaacgaaagtgatttcaAGGGTGTACGCGAATCGGATGTT GATTAGCAAAGTCCCAtaatgacggataggaaaaataATCTTGTCCGAAC TACGGATGgtttatatcatttttcaacaaaaacaaaaacaaactagCCAC AACCACAACCAGACTGTCAAAATGTTTAAGCCAAGCTGTTTCTCCAAAgc aaaacagaatatgcaagaGGATCACTTGTcactttcttgatttctttcac attgaatatgaagaatgttcttCTGATCAAGCAAAATGCCATTGGAATTT CATACTGCTAACGAACACTATAATAGAGGGAACTAAACAAATCTGATGCT GATTTTCTACTGTCTGCTGCTGAATGAATAAAGACATAAGGACAGAagaa ctatgtaaaaggtcctATGTCTACGTATAATTATATCTCTGGTACTGATG TCAGCTAGCACTCAATGGCTGAATGCCAATTGTGTTCACGATCTGGTTTG GATGAATTGGAAGTTGGGAGTTTTAATGGcatataaaatgaaatggacTT ATATGGATGgattgaatagacctttttttaaagaggcaaccctgttgaat aattatgtagtccagcataaaaacaatgatacagccatgcataattactg tttcatgcatattaataattatgcatggctatatcattgttattttgctg gactacataattattcaacagggttgcctctttaaaaaaaggtctataat aaAGTATTATAAGATTATAATCCGGGTATACCTACAACTGAACTTGGCTT TACTTTTTATGTCCTTGTAAAACTTTGTGTACGTAACCTGATGCCTTACC CAAGTGAAGAATGGATTGACGTGAAAtgtatataatgagatatggATTTG AATAGCTTTATATTAAATGATAATGACTGAATGATATTTGGGGAACGTTG AAATAATGGACTGAAATATTCTTGTATTACTCTGTACGTATCTTTTGACG CCTGAGTGAAACTACCTGATACCAATGACTGACAGTGTTGAACGTTTGAA TGGGAGTGGTGACtactaatttttatcattttggcgcttgggaatatttt tcaacatttttacaCAATGCCATTATGTACATTTTGGACTACATTTGATA ATAAACTTGCCGAAATTggaaataatatataatttttattttgtacaaaC TTTGAACATTTCAATCTTTTGGCAATAAACAAAAAGGCAATAATCATGTT ACTCAGtacaattttaaacttttgtgtttgtcaaatgttttgaatatttc taaacatcgaacaaatttttcaaacaaattcagAAGATTGAATCAAAAAT GCATTTTCAGATTAGTTCAAGCTCTTTTATTTTGAACCAAATGATTGGGA AATTTATGACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033483XLOC_033483Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053017-exon-scaffold_223-1491911889:55021..56633TCONS_00053017-exon-scaffold_223-1491911889:55021..56633Clytia hemisphaericaexon
TCONS_00053017-exon-scaffold_223-1510915933:55021..56633TCONS_00053017-exon-scaffold_223-1510915933:55021..56633Clytia hemisphaericaexon
TCONS_00053017-exon-scaffold_223-1575043694:55021..56633TCONS_00053017-exon-scaffold_223-1575043694:55021..56633Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:55021..56633 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.873353 0.730228 1.27423 1.01079 5.63919 4.58771 5.00469 4.54578 5.06642 5.2943 6.07537 5.36249 4.35277 4.38965 2.54804 2.84067 3.46056 3.29944 5.48941 6.33653 10.4073 8.91039 4.70819 6.37975 3.52803 4.50982 5.45091 3.84558 2.4377 2.67768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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