TCONS_00053006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053006
Unique NameTCONS_00053006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=transcript|length=639bp
AATTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCA
GTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCT
TCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATG
TGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGT
GTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTAtggaaaaagatt
tgaaataagTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAA
CCACAACAACCACTACTACGACCACTACTACAACCACAATCACGACAGCT
CAACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGAAAATCT
GCAAACAATATCAATCATCGGAGGTTATTTCGGTGGAATTGGAACAGTTC
TTTTGGTCGAGTTCATCATCTTCATTTTGTACCGTTATTCAAAACAACGA
AAGAAAGATATGGACCAAGattttaatcTGTCTGCTGTAAGGTAAGTGTT
AATTGAAAAGTACTAGACATTATATTCTGTCGTTAGCAGGTTAGTAGGCA
AAAAGGCTACACTGATTACTTAATTATACTGATTTCGAT
Run BLAST on NCBI

protein sequence of TCONS_00053006-protein

>TCONS_00053006-protein ID=TCONS_00053006-protein|Name=TCONS_00053006-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
LDDITAPVFIQADPCPVLTWDAEDHGLCEVDLLLSFPQNDNNFRNLTTNV
SAGSFRDCCFTAHATSVEYKTMVYLKTKYGKRFEISDISRPLTTVGLTKT
TTTTTTTTTTTTITTAQPSKKPIPVQIDEEENLQTISIIGGYFGGIGTVL
LVEFIIFILYRYSKQRKKDMDQDFNLSAVR
Run BLAST on NCBI

transcript from alignment at scaffold_223:61652..64192-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=transcript|length=2541bp|location=Sequence derived from alignment at scaffold_223:61652..64192- (Clytia hemisphaerica)
AATTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCA
GTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCT
TCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATG
TGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGT
GTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATT
TGAAATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAA
CCACAACAACCACTACTACGACCACTACTACAACCACAAGTATCAATTTC
TCTTTCTTCTGTCTATATCTTCAATATTTCTATGTTTGCAATAAATTACA
CGGTGCTTTTTTTAGACCTTGGAACTACTTAGGAAACACTACGGGATAAA
TTGAAACCTTCCATCAATGACTTTTACTCTTTCAGTCACGACAGCTCAAC
CATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGGTCAGTAAGAT
TCTGTTTAGTAAGGATCGAGCAAAAAGGTCCCGCGTGACGTCTTTTATTG
AACTAAAACGTGCGATAGTATAATGGAGCTCATAACTTTCAAAGGGAATT
GGGCTTATTTGAAAACATTTTATCACCAAAACTACAATTGGTGCCTAACA
TATTGGCATTTTTGGCTATTTTACCATTTTTCCAAAAGTTCGAGCGAGAA
TGTCAATTTCAGGCTTTCAACTTGACTTCATTGATTATTTCTATCTGGGA
GGGATTTATTGGTTTCTAAAGTCTATTCACTATAAGTGTGCACTCTTTTT
TCTTTTACCTATAACCTTTGAAGGAATTCTTCGATCTTTATAAATTTGGT
ATCATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATAAAAAAATCTT
TAAAAAAATTCTAAAAATTAAGATGAAAAAGAAGAAGAAAAAAATGAAGA
TCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTGGAGAGATTCCTTGA
TCTTAGTAGATCATCACTGTGAAGAAATTTCATTAAAATGTTTATTCAAT
ATAAAGTTATGATACAAAGTTAATAAGTGATTGACCCCAAAAAACAGCAA
AAAACTGCAGAAAACAGCGTTTTTAGACGTCAATCAGCTTATAACTTTGT
TTGATATCTTTTGACTGAATAAATTTTTTTCAGAATTTTTTTCACAGTGA
TGACGTTCGATGATCAAAGATTCACTTCAGTGAAAATGATAGTTATAGCA
CTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTCATTTT
TATAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTTTTTATTTC
AAATTGTTCCACTCACTAATATCTTTCCAATGATACCAAATTTATAAAGA
TTGAAGAATTCCTTCAAAAGTTATAGGTAAATGAAAAATGAGTGCGCACT
TATCGTGAATAGACTTTAGGCTATATTTCAAGTCCAACCAGACCATTTTT
GAACTTCTAGATCCACAGATCCTAAGGTCTTAAGTCTTAAGTTTAGCGTT
AAAACTCTGAGTTAAAACTCTACACTTCCAATCTAATTTAGAGCGCTTCC
AAATTGTTTTTAGTTATAGAATTTCGTGGGGAATTTCCCTTTTGTGCAAA
GTATCTTGGAACAGATTGTAGGACTTATTTGAGGTGTTTTTAAGTTAATA
AAAGTGTCCTATCTTTGTTGATAAATTCGACCTTAAAATATTTGATTCTT
CTAAAACTTCCTCAGGTCTAATATTTAATACAGCGAAAGTCAGTTTGTTC
AGTTCACGGAATGGTATTTTCTTTGGTGAAATCCAGAGATAATAATTACT
CACTCATTTTATAGAAAATCTGCAAACAATATCAATCATCGGAGGTTATT
TCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTG
TACCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGGTAACAATTA
GACTGTACAAAATTCACTTCGCGAAAAAGAGCCTTGAAGTACTAACTGAC
TAACTCTAATTTAACCTCTATTATTCGATCAAACTTTTTCTAGCGAAAAA
AGCCGTTCAGTACAGACAACTCTCTCTCTCTAAATCGAATCACTTTCATT
CGAATCTTTTTGCAATTCGAACAAAAATATTTGACCCCTCAGCTGGAAAT
TGGTTTAAGTGATTTAACTCTCTGTTATTCGAATCTTTTTAAGAATAAAT
GTTTCCTCTCTATTTTTTTAGATTTTAATCTGTCTGCTGTAAGGTAAGTG
TTAATTGAAAAGTACTAGACATTATATTCTGTCGTTAGCAGGTTAGTAGG
CAAAAAGGCTACACTGATTACTTAATTATACTGATTTCGAT

Coding sequence (CDS) from alignment at scaffold_223:61652..64192-

>TCONS_00053006 ID=TCONS_00053006|Name=TCONS_00053006|organism=Clytia hemisphaerica|type=CDS|length=2172bp|location=Sequence derived from alignment at scaffold_223:61652..64192- (Clytia hemisphaerica)
ATTTTAATCTGTCTGCTGTAAGGTAAAAAATCTGCAAACAATATCAATCA
TCGGAGGTTATTTCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATC
ATCTTCATTTTGTACCGTTATTCAAAACAACGAAAGAAAGATATGGACCA
AGTCACGACAGCTCAACCATCCAAGAAACCAATACCTGTTCAAATTGATG
AAGAAGTTAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATG
TCCAGTCTTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATT
TGCTTCTGTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACA
AATGTGAGTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAAC
AAGTGTCGAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAA
GATTTGAAATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACG
AAAACCACAACAACCACTACTACGACCACTACTACAACCACAAATTTTAA
TCTGTCTGCTGTAAGGTAAAAAATCTGCAAACAATATCAATCATCGGAGG
TTATTTCGGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCA
TTTTGTACCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGTCACG
ACAGCTCAACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGT
TAGATGATATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTC
TTGACATGGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCTTCT
GTCTTTTCCACAAAATGATAACAACTTCAGAAATCTCACCACAAATGTGA
GTGCTGGAAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTC
GAATATAAAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGA
AATAAGTGACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAACCA
CAACAACCACTACTACGACCACTACTACAACCACAAATTTTAATCTGTCT
GCTGTAAGGTAAAAAATCTGCAAACAATATCAATCATCGGAGGTTATTTC
GGTGGAATTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTGTA
CCGTTATTCAAAACAACGAAAGAAAGATATGGACCAAGTCACGACAGCTC
AACCATCCAAGAAACCAATACCTGTTCAAATTGATGAAGAAGTTAGATGA
TATAACAGCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTCTTGACAT
GGGATGCAGAAGACCATGGATTATGCGAAGTGGATTTGCTTCTGTCTTTT
CCACAAAATGATAACAACTTCAGAAATCTCACCACAAATGTGAGTGCTGG
AAGTTTTCGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTCGAATATA
AAACAATGGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGAAATAAGT
GACATCAGTAGACCGTTGACAACTGTTGGGCTGACGAAAACCACAACAAC
CACTACTACGACCACTACTACAACCACAAATTTTAATCTGTCTGCTGTAA
GGTAAAAAATCTGCAAACAATATCAATCATCGGAGGTTATTTCGGTGGAA
TTGGAACAGTTCTTTTGGTCGAGTTCATCATCTTCATTTTGTACCGTTAT
TCAAAACAACGAAAGAAAGATATGGACCAAGTCACGACAGCTCAACCATC
CAAGAAACCAATACCTGTTCAAATTGATGAAGAAGTTAGATGATATAACA
GCACCAGTTTTCATTCAAGCCGATCCATGTCCAGTCTTGACATGGGATGC
AGAAGACCATGGATTATGCGAAGTGGATTTGCTTCTGTCTTTTCCACAAA
ATGATAACAACTTCAGAAATCTCACCACAAATGTGAGTGCTGGAAGTTTT
CGAGATTGCTGTTTTACTGCGCACGCAACAAGTGTCGAATATAAAACAAT
GGTTTATCTAAAGACGAAGTATGGAAAAAGATTTGAAATAAGTGACATCA
GTAGACCGTTGACAACTGTTGGGCTGACGAAAACCACAACAACCACTACT
ACGACCACTACTACAACCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033477XLOC_033477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053006-exon-scaffold_223-1575043694:63854..64192TCONS_00053006-exon-scaffold_223-1575043694:63854..64192Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1575043694:63654..63707TCONS_00053006-exon-scaffold_223-1575043694:63654..63707Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1575043694:62053..62178TCONS_00053006-exon-scaffold_223-1575043694:62053..62178Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1575043694:61652..61771TCONS_00053006-exon-scaffold_223-1575043694:61652..61771Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1510915933:63854..64192TCONS_00053006-exon-scaffold_223-1510915933:63854..64192Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1510915933:63654..63707TCONS_00053006-exon-scaffold_223-1510915933:63654..63707Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1510915933:62053..62178TCONS_00053006-exon-scaffold_223-1510915933:62053..62178Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1510915933:61652..61771TCONS_00053006-exon-scaffold_223-1510915933:61652..61771Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1491911889:63854..64192TCONS_00053006-exon-scaffold_223-1491911889:63854..64192Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1491911889:63654..63707TCONS_00053006-exon-scaffold_223-1491911889:63654..63707Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1491911889:62053..62178TCONS_00053006-exon-scaffold_223-1491911889:62053..62178Clytia hemisphaericaexon
TCONS_00053006-exon-scaffold_223-1491911889:61652..61771TCONS_00053006-exon-scaffold_223-1491911889:61652..61771Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053006-proteinTCONS_00053006-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:61652..64192 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.111264	0.263768	0.742525	2.08543	3.19822	1.86498	3.09283	4.04215	4.65874	5.76836	7.22354	5.22132	8.79509	8.31636	7.63043	6.75291	7.81764	6.88705	2.83801	3.44021	0.885834	0.869645	0	0.603691	8.57886	7.46409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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