TCONS_00053004 (transcript) - C. hemisphaerica

Overview
NameTCONS_00053004
Unique NameTCONS_00053004
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00053004 ID=TCONS_00053004|Name=TCONS_00053004|organism=Clytia hemisphaerica|type=transcript|length=580bp
GCTGGTTCTCTTACAAAAATCAACTAGATAATGTAAGTAGTTTACATTAA
actgaaaatgcttttgatatTTAAGTTAATTCTTAGAGGNCTGTAAAAGT
TGGATGTTTCATGCACGAAGACTGGAAGAAGCTGGTTCTCTTACAAAAAT
CAACTAGATAATATTCAAGCTGGAGTGTATTATTGGTTTCCTTATTGCGA
CTATCCTCAGCTGACTTTGTGTGGTCGCCAGCAGAAAGTACCGAAAATAT
GCTATTAAAGgatcGCAAATATGTGAAGGAGACCAAAGAAATCGCAATCA
AGATATCGTTTTTTAACACCTCGAATAGCAATCATACTGGAAACGTTTGG
AATGATTATTACAAAGATGCCAGAAAGGAAGGACGGAAGAGaaagaacat
caaatttttgatttcattgcctttaatttatactgattgtagattttcat
acccagaaaattatatagaaaagagaattcaaagaaaattcaaatgtgtg
tacggtctttctcataatagtgcaatgaataggaattattttggcaaaga
aCGTCTTAGAGACGTGTTAAAACTAatcta
Run BLAST on NCBI

protein sequence of TCONS_00053004-protein

>TCONS_00053004-protein ID=TCONS_00053004-protein|Name=TCONS_00053004-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
MLLKDRKYVKETKEIAIKISFFNTSNSNHTGNVWNDYYKDARKEGRKRKN
IKFLISLPLIYTDCRFSYPENYIEKRIQRKFKCVYGLSHNSAMNRNYFGK
ERLRDVLKLI
Run BLAST on NCBI

transcript from alignment at scaffold_223:52407..53506-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00053004 ID=TCONS_00053004|Name=TCONS_00053004|organism=Clytia hemisphaerica|type=transcript|length=1100bp|location=Sequence derived from alignment at scaffold_223:52407..53506- (Clytia hemisphaerica)
GCTGGTTCTCTTACAAAAATCAACTAGATAATGTAAGTAGTTTACATTAA
ACTGAAAATGCTTTTGATATTTAAGTTAATTCTTAGAGGNCTGTAAAAGT
TGGATGTTTCATGCACGAAGACTGGAAGAAGCTGGTTCTCTTACAAAAAT
CAACTAGATAATGTAAGTAGTTTACATTAAAGTGAAAATTCTTTTGATAT
TTAAGTTAATTCTTAGAGGCTTTATCGGTGTAGCTTATTTCAGGTTTCAA
TTTCTGATGATATTTATTTTTGAGAGCAAACCCTGGAAAAATTACATAAT
CTTCAGTAAACTTTATGTTAAACTTTTTATTTTAACTTCTTTTCCCTCAG
ATTCAAGCTGGAGTGTATTATTGGTTTCCTTATTGCGACTATCCTCAGCT
GACTTTGTGTGGTCGCCAGCAGAAAGTACCGAAAATATGCTATTAAAGGT
AGGTGAAATGTAACAAGACTTTAATAATATCGTTCCAAAACTATGCTAAT
TTCTTGTTAATAACCCCCTGCATCACTGAGTGAGCTTGGTACTTCAAACT
ACTGAAATTTGACTTGGAAACACCCCTGTCTCAACGACAATAATTTAGCA
AAGTCCTTGGTAGAATACTTTCGTGAAACATAAAGTTTGGCCATGAAATT
TAAGAAGTTTTTTCTTTATCCTTCTGGAGTATTCTTTTTTCCCTGGAAAG
AAAAGGTAGTTTTCAACGTCACAACCGCAGCTAAAAAATCTTTAAAAATC
AAATTTACTATTTGTCTTTTATTTTTTCAGGATCGCAAATATGTGAAGGA
GACCAAAGAAATCGCAATCAAGATATCGTTTTTTAACACCTCGAATAGCA
ATCATACTGGAAACGTTTGGAATGATTATTACAAAGATGCCAGAAAGGAA
GGACGGAAGAGAAAGAACATCAAATTTTTGATTTCATTGCCTTTAATTTA
TACTGATTGTAGATTTTCATACCCAGAAAATTATATAGAAAAGAGAATTC
AAAGAAAATTCAAATGTGTGTACGGTCTTTCTCATAATAGTGCAATGAAT
AGGAATTATTTTGGCAAAGAACGTCTTAGAGACGTGTTAAAACTAATCTA

Coding sequence (CDS) from alignment at scaffold_223:52407..53506-

>TCONS_00053004 ID=TCONS_00053004|Name=TCONS_00053004|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_223:52407..53506- (Clytia hemisphaerica)
GATCGCAAATATGTGAAGGAGACCAAAGAAATCGCAATCAAGATATCGTT
TTTTAACACCTCGAATAGCAATCATACTGGAAACGTTTGGAATGATTATT
ACAAAGATGCCAGAAAGGAAGGACGGAAGAGAAAGAACATCAAATTTTTG
ATTTCATTGCCTTTAATTTATACTGATTGTAGATTTTCATACCCAGAAAA
TTATATAGAAAAGAGAATTCAAAGAAAATTCAAATGTGTGTACGGTCTTT
CTCATAATAGTGCAATGAATAGGAATTATTTTGGCAAAGAACGTCTTAGA
GACGTGTTAAAACTAATCATGCTATTAAAGGATCGCAAATATGTGAAGGA
GACCAAAGAAATCGCAATCAAGATATCGTTTTTTAACACCTCGAATAGCA
ATCATACTGGAAACGTTTGGAATGATTATTACAAAGATGCCAGAAAGGAA
GGACGGAAGAGAAAGAACATCAAATTTTTGATTTCATTGCCTTTAATTTA
TACTGATTGTAGATTTTCATACCCAGAAAATTATATAGAAAAGAGAATTC
AAAGAAAATTCAAATGTGTGTACGGTCTTTCTCATAATAGTGCAATGAAT
AGGAATTATTTTGGCAAAGAACGTCTTAGAGACGTGTTAAAACTAATCAT
GCTATTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033476XLOC_033476Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053004-proteinTCONS_00053004-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00053004-exon-scaffold_223-1575043694:53345..53506TCONS_00053004-exon-scaffold_223-1575043694:53345..53506Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1575043694:53059..53156TCONS_00053004-exon-scaffold_223-1575043694:53059..53156Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1575043694:52407..52726TCONS_00053004-exon-scaffold_223-1575043694:52407..52726Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1510915933:53345..53506TCONS_00053004-exon-scaffold_223-1510915933:53345..53506Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1510915933:53059..53156TCONS_00053004-exon-scaffold_223-1510915933:53059..53156Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1510915933:52407..52726TCONS_00053004-exon-scaffold_223-1510915933:52407..52726Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1491911889:53345..53506TCONS_00053004-exon-scaffold_223-1491911889:53345..53506Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1491911889:53059..53156TCONS_00053004-exon-scaffold_223-1491911889:53059..53156Clytia hemisphaericaexon
TCONS_00053004-exon-scaffold_223-1491911889:52407..52726TCONS_00053004-exon-scaffold_223-1491911889:52407..52726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_223supercontigscaffold_223:52407..53506 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.433767	0.248339	0.58776	0.368364	1.44231	0.492793	0.279908	0.832082	0.768086	1.2297	0.142269	1.10791	0.358929	0	0.333976	0.162679	0.655379	0.114534	0	0.613146	0.774879	0.55703	0.388242	0.393855	13.942	9.59847	0.702519	0	0.301546	0.911081
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00053004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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