TCONS_00052983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052983
Unique NameTCONS_00052983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052983 ID=TCONS_00052983|Name=TCONS_00052983|organism=Clytia hemisphaerica|type=transcript|length=683bp
CACCAACAAATCCACCAACTAATCCACCAACAAATCCACCAACCAACCCA
CCAACCAACCCACCAACAAACTCACCAACAAATCCACCAACTAACCCACC
GACTAACCCACAAACCAATCCACCAACAAACCCACCAACAAACCCACCAA
CTAATCCACCAACAAACCCACCAACCAACCCACCAACAAACTCACCAACA
AATCCACCAACTAACCCACCGACTAACCCACAAACCAATCCACCAACAAA
CCCACCAACAAATCCACCAACTAATCCACCAACAAATCCACCAACAAATC
CACCAACAAATCCACCAACTAATTCACCAACAAATCAACCAACCAACCCA
CCAACAAACCCACCAACTAACCCACCAACAAATCCACCAACTAATCCACC
AACAAATCCACCAACTAATCCACCAACAAATCCACCAACCAACCCACCAA
CTAACCCACCAACTAACCCACCGACTAACCCACCAACCAACCCACAAACC
AATCCACTAACTAACCCACCGACAACTTCATTTGATCCAATGACATTTTG
CAATGGAAGAATTGGTTACTTTGCTCACCCAAACCGTAACCTTTTCATTC
GCTGTACTCAACTTGGAACCTTTGTACAAACATGTGGAAATTTGGTTTGG
CTTCAAATCGCAGAGGGTTACGGTACCTGCGTA
Run BLAST on NCBI

protein sequence of TCONS_00052983-protein

>TCONS_00052983-protein ID=TCONS_00052983-protein|Name=TCONS_00052983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
PTNPPTNPPTNPPTNPPTNPPTNSPTNPPTNPPTNPQTNPPTNPPTNPPT
NPPTNPPTNPPTNSPTNPPTNPPTNPQTNPPTNPPTNPPTNPPTNPPTNP
PTNPPTNSPTNQPTNPPTNPPTNPPTNPPTNPPTNPPTNPPTNPPTNPPT
NPPTNPPTNPPTNPQTNPLTNPPTTSFDPMTFCNGRIGYFAHPNRNLFIR
CTQLGTFVQTCGNLVWLQIAEGYGTCV
Run BLAST on NCBI

transcript from alignment at scaffold_222:69206..69888

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052983 ID=TCONS_00052983|Name=TCONS_00052983|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at scaffold_222:69206..69888 (Clytia hemisphaerica)
TACGCAGGTACCGTAACCCTCTGCGATTTGAAGCCAAACCAAATTTCCAC
ATGTTTGTACAAAGGTTCCAAGTTGAGTACAGCGAATGAAAAGGTTACGG
TTTGGGTGAGCAAAGTAACCAATTCTTCCATTGCAAAATGTCATTGGATC
AAATGAAGTTGTCGGTGGGTTAGTTAGTGGATTGGTTTGTGGGTTGGTTG
GTGGGTTAGTCGGTGGGTTAGTTGGTGGGTTAGTTGGTGGGTTGGTTGGT
GGATTTGTTGGTGGATTAGTTGGTGGATTTGTTGGTGGATTAGTTGGTGG
ATTTGTTGGTGGGTTAGTTGGTGGGTTTGTTGGTGGGTTGGTTGGTTGAT
TTGTTGGTGAATTAGTTGGTGGATTTGTTGGTGGATTTGTTGGTGGATTT
GTTGGTGGATTAGTTGGTGGATTTGTTGGTGGGTTTGTTGGTGGATTGGT
TTGTGGGTTAGTCGGTGGGTTAGTTGGTGGATTTGTTGGTGAGTTTGTTG
GTGGGTTGGTTGGTGGGTTTGTTGGTGGATTAGTTGGTGGGTTTGTTGGT
GGGTTTGTTGGTGGATTGGTTTGTGGGTTAGTCGGTGGGTTAGTTGGTGG
ATTTGTTGGTGAGTTTGTTGGTGGGTTGGTTGGTGGGTTGGTTGGTGGAT
TTGTTGGTGGATTAGTTGGTGGATTTGTTGGTG

Coding sequence (CDS) from alignment at scaffold_222:69206..69888

>TCONS_00052983 ID=TCONS_00052983|Name=TCONS_00052983|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_222:69206..69888 (Clytia hemisphaerica)
TACGCAGGTACCGTAACCCTCTGCGATTTGAAGCCAAACCAAATTTCCAC
ATGTTTGTACAAAGGTTCCAAGTTGAGTACAGCGAATGAAAAGGTTACGG
TTTGGGTGAGCAAAGTAACCAATTCTTCCATTGCAAAATGTCATTGGATC
AAATGAAGTTGTCGGTGGGTTAGTTAGTGGATTGGTTTGTGGGTTGGTTG
GTGGGTTAGTCGGTGGGTTAGTTGGTGGGTTAGTTGGTGGGTTGGTTGGT
GGATTTGTTGGTGGATTAGTTGGTGGATTTGTTGGTGGATTAGTTGGTGG
ATTTGTTGGTGGGTTAGTTGGTGGGTTTGTTGGTGGGTTGGTTGGTTGAT
TTGTTGGTGAATTAGTTGGTGGATTTGTTGGTGGATTTGTTGGTGGATTT
GTTGGTGGATTAGTTGGTGGATTTGTTGGTGGGTTTGTTGGTGGATTGGT
TTGTGGGTTAGTCGGTGGGTTAGTTGGTGGATTTGTTGGTGAGTTTGTTG
GTGGGTTGGTTGGTGGGTTTGTTGGTGGATTAGTTGGTGGGTTTGTTGGT
GGGTTTGTTGGTGGATTGGTTTGTGGGTTAGTCGGTGGGTTAGTTGGTGG
ATTTGTTGGTGAGTTTGTTGGTGGGTTGGTTGGTGGGTTGGTTGGTGGAT
TTGTTGGTGGATTAGTTGGTGGATTTGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033456XLOC_033456Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052983-exon-scaffold_222-1491911889:69206..69888TCONS_00052983-exon-scaffold_222-1491911889:69206..69888Clytia hemisphaericaexon
TCONS_00052983-exon-scaffold_222-1510915933:69206..69888TCONS_00052983-exon-scaffold_222-1510915933:69206..69888Clytia hemisphaericaexon
TCONS_00052983-exon-scaffold_222-1575043694:69206..69888TCONS_00052983-exon-scaffold_222-1575043694:69206..69888Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052983-proteinTCONS_00052983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:69206..69888 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.340882	0.665493	0	0.27667	0	0	0.31509	0	0.12633	0.729643	0.913252	0.337878	0.31452	2.60292	0.220284	0.101471	0	0	0.100219	1.51721	0	0	0.0539449	0	0.202915	0.382778	0	0	0.63002	0.47124
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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