TCONS_00052982 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052982
Unique NameTCONS_00052982
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length892

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052982 ID=TCONS_00052982|Name=TCONS_00052982|organism=Clytia hemisphaerica|type=transcript|length=892bp
caGGTTTCAACGAGAAGATGTTTGCAGACAAATGGGGTGGTGAGGATTGG
GAACTAGTGGATCGTATCATAGCAACAGGGATACAAATCATCCATTATCG
ATTGCCACGTTTTTATCATTTGTACCATTCACGTAAAAAAATGTGGAACC
ATTATTGAGAAAGATTGTGGATGGTTCAAAGGATAGGAAGTGTTCCAACT
CCTTCCTGCACTTCCGTCATTCGAGATGTTGAACAGCATAAGTACAACTT
TTGAACTTCTGGTTCAATGATGGTCGTTTCCATTGGTGTATTCGCAGAAC
TTGCTTCGTGGACACACTACGTGGTCACTTTCTCTCGTCTGGGAAGGCCA
TCTCTCATCAACGAGAGCCTATGCTGCTgttctttcaaatttcaattcta
ttttttcGGTAGCTGCATAAAAAATCATCAGTGTAACCAGAGCTCTCTTA
TAAGAAGCAGCAAACTTTTTTGAGGCttagctgttcttattttttggcac
tatGAACCTTAAGATATTCTGATCCTGCTCTTGTTTTAGGGAAAAATTTA
AATAtcattcttcttaatttgttcttaacatttgacgctttaaaatttca
ttGTTGTATTGAAAGATATGGAGTGCATTCAGATTGGATTTCCCCGAGTT
CTCGTTAAGTTTATTTTAGGTGTTTTAAAAtccattttgtttttctgact
gttttattttttataagatttctAAGATTTACCCAGATGATACATGTAGC
AAATTTAACCAGATTTTATTTATATcgatattttataattttaattcCTA
TTATTTTATTGACAGATTATAAGATTTTacgagatttttatttttttgaa
ttttggattgAAATTTTTAGTTTATAAATAAGTATAGAAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_222:545811..551946-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052982 ID=TCONS_00052982|Name=TCONS_00052982|organism=Clytia hemisphaerica|type=transcript|length=6136bp|location=Sequence derived from alignment at scaffold_222:545811..551946- (Clytia hemisphaerica)
CAGGTTTCAACGAGAAGATGTTTGCAGACAAATGGGGTGGTGAGGATTGG
GAACTAGTGGATCGTATCATAGCAACAGGGATACAAATCATCCATTATCG
ATTGCCACGTTTTTATCATTTGTACCATTCACGTAAAAAAATGTGGAACC
ATTATTGAGAAAGGTATTTGTTTGCTTCTTTGATCTTTGTTTATTTACAG
GGAAAATGTTTTCTTTTTTACAAAATCCTACAAATTAGTTGAAATTATTT
ACATTTTAGTTTAAAAAAAGGATATGCGTTTTTGTTCGACAATTTGATAT
TTCTTCTGTTGTGTTGTGATGAGACGTTTACCCGATTGACGGTTTTGTTA
AAGATTGTTCTGTTGTTGTTCTTTCAGTTTTTGAATCTGTTCTTTGAGCT
CTTCGTTTTCTTTCTTCAATTTTTCCATCTCTTCAACGATGAGACATTCT
TTGTACCTTCTTGCTAACCGTGATCTTCTTGAAGCTTCGTTGTTTTTGCG
ACGTCGTTCGAAGTATTCGGGGTCCTCGTGTGCTTGCGTGTTGGTGTAGC
GATGGCGACGCATGGAGGGCTTGGAAACGAGAGGTTTGGGATTGAATTTG
TACAAACGTTTGACTTTCTTGGTCTCGTGATCGTCGTCTGAAGTATCGCT
TTGTGAGAAAGAGAAATTGGTAGAATCACTGTGAAATGATGGTGTGTTTG
TTGTGTCTGTGTTGTGAAATGTCGGGGAAGTGTTTTCCGTGTGGTGGAAT
GTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTAACAATCAGTGGGTTCTCCATCATTT
GCTCTGGCACACTCTTTTGCATTCAAAAATATATCAATCTTTGCAGATTT
TCCTCGAAACTATCGCTAAAATAATAGCACAACGCACCGAATCTTAAAAG
ACGTAGTAACAAATCTGCACAAGTTTTTTCGTTTTTACGACTTGCAATCC
TATCTTCCTTTGCGTTAATTATTCTTGCACGTTAATTAATTACAATATCA
AAAGAAAGGTAATAACTTTCACGGTTTTCCAATCATTTTGAAATAATCTG
TGGGATTGGAGATCGTGCAAATTTCTAGTTGAAATAATTATGACGTGTGA
GATGCGGAGCGCTATTGTATTATTCAATTTTAAGCATGCCGTAAAATTTA
TCTCTACTGCAGAAAATCGTGCACTGAAAACACTGTCTCTGTTATCGGAA
GGTATATCCTTTGAGTTATTGTTAAGTAAATCGGTTGGTTAGTTTACGAT
CGCAGTCGAGGGCGACCCGAAGGCTCTCATTTCTCTAGCTGTCTACCGAA
GGTAGGGGAGGTCGCCACTCCTTTCCCTGGATTTCTCCACCTACCCTTGA
TCCGTCTCTTTAGTTGCTGAGCATCAAGCAGAGAGGCAGCAAGTACCAAT
TTGTGAATCTTTGGTATGACCCTTGGGGATCGAACCCACAACCGCACCGT
AGCTGGATACTCTACCTTCATGCTACGGTCGTTAACTTGTTAACTTGTTA
ACTCAGTCGCTTTGACGGGCGTTTTACAAAATACAAGGGTAATTCACTGA
ACAGGTTCGAGCCCGGGCTACTATCGAAATCTTAGCATCGTTCCCTTCAA
AGACGATGAATAAGAAAATAGCACATTTCAACGTTGTCTCAAGGAGTTCT
GCGATGAGATGTACATAAATCACCATGATTCAACCATGTAGATGTAAGGT
GGTCTTCTACACTTCCGCATGGGTGATAACTCAACGGCATACTTATTTTT
TTTATTAATTTCTCTTTTATCACCAAAATAATGGTATATAACTTAGTGCA
AGCTGACTATGGTAAAATGAATTAAGAAAAAAAATCGTAAAAGGACAAAA
GTTAAATGTTTTAAATTTTCAAAATTAAAATAAATTTCTTTAAATATTTA
TTTAAAAAATTCATGAAAAGGATTTCCTCTGGAATTACACAAAAAGTGAT
TTCAGAAATAAAATATACGAACTGTTTTTGCTTTACAATTGCACGCTAAA
AACATGTCGGGATTGGAGCGTTCGATTTTCTTCTCTTGACAAAGTAAAGG
ACCATTAGTTTCACAAAAATAATCGATATAAATTCTTAGCTTTGCTCGAA
GCACTTTTTCTGTGACACGGTACTAAACATCTATAACCTTGATTGAATTA
ATTAGCGGGTATAATACTTAAATATACTGCTATTTGTTGGAGATTGGCAT
AATTATATAANTTTGATTGAATTAATTAGCGGGGTATAATACTTAATTAT
ACTGCTATTTGTTGGAGATTGGCATAATTATATAATTCTATTGTTTGTCG
GTTTCGTATATTGAAAACTCGGTTATCGTTTCTCGCCGACCTTCAGCAAG
CAAGGAGATGTATGAGAGCCGCCCACAAGCATAATTATCTCTCTGTTTAC
TTTCCATTGTCGTTAATTTATTCGTTCGAACGCCTCCTCGACGGATGGGT
AGAATTAATTAATTATGCAACAAGCATACTTGATTGTAGAATGCAATTAA
AAGAGGTATTGTTTTGTAGTGACGATGGTTTTAATCACTGATTATCCCTT
TTATGGTGTGTTTCTTTACGCTCCCACGAAATTTGTGCAGTGGGTGAACC
GACGCTTTCGGCTTTGGCCGTCTCTTATCTTCAATCATTCGTTTTACATA
TTGGCGTGTCTTTGCTTCTTTACGTATAAATGCAAGAACTCGATGACAGC
CTGCTTTGGGTTCTTTTCTTGAGCCACCCTTTTTGAACGAAGCCGTGCCA
TTATTTTCGATAATAGAGCCCTTACAAAATGGTCTTGCTTTTATTTGCGT
GTCTTTACTTTGAATTTTACATCTTACTCGAATGTTAAAAGAGAGGGGCG
ACTGCTCGTGTATGTTTAAGGCTTTTCCTGCTTCAAAATAAGAGGGGTGA
AACTTTCATTTCTCAGATATGATGGATTTTCTTTCATGGCTTTTCTTTCA
TGGCTTCAATTTTCCAATATCTTCCGCCATTCAGTAATACGAGTCGATGG
CTTATGTTTGTTTGGGGTGGAGAATGGAAGGATAAAGTTAAAGCTGTCTA
GTTCGCTTTTCATAGATGGATGGTGGAGAGATGCTAGACTGGAGCCGTTT
TTGATACTTTTAAGACAGCGGTATGAGTGCCATACATTTGTATAAAGCCC
GAAGGGCCAGATATTGTGCTTTTGCTGAAAAGTGTGCCGAGGTTAGGTAG
GAAATCCTACCTATGTTTGGATTACATTAGCTTGTTTGTCATATTTTATT
TTTGATTCAATGAATGATACAGTTGCAAATCGTTTGTAATGAGGTTCGTA
ATTGATCGAGTGGTCGGTCCACGTCATTCGTCGAGTAATTAATTGACTTC
ATTTCATCAAGTAGTCATTTTGTTACACAATCCTTCAATCAGCTTGTCGA
GGTAAAAAGGAAGAAAATCTCGTTCCTTCATTTCATCTCTTACTCATTTT
TTGTGATGAGTGCACGGTGTATGACGTCATAAACAAATTGTGTCAGGAAT
TACGTTAAACAGGGCAACATCATTGTTTTGTTTCGAAAATGGTGGCAGAT
ACCACTGTATAAAAACTGCCATCAGCAAGTGAACATATAGTTGACTCTAG
CTAATCTAAAATTTGGTGGTCGATCTAGTTTCGACATACAGAGAGGTTTA
AATCACAGAAAATCCATCAAGGCCATGACAAAGAATTCTTTTGAATTTGT
GGAAGGGATCGAATGCCAACTCTGGTTTCTTTCGGATCTTTCGCAGACTA
CATTAGCGAATATAGAGCTACTTTTTTTTGAAACGATTCGGAACAACCCG
CCGCTGTTTTAACGTGCGTGCGATTGAGGACAGTTATAGTGCTGATTTAC
TGTCGTCCTCAATCATTTAGGATCTAGACGAATCCAAAACTAGCCGTCTT
CGCCACAGGACAAACTCCATACATAAAGTCGCTACCGGTAAGGTTCTAAT
TGGACTATATCCCAATTGTGGACGACATTTTAGGGGTTAGAAGTGCGAAT
TATTCCAATTACATAAACTTGCCACTATTAATGTGACGCAGAGGTAAACA
CATGTACGACTCATTCATCTTGAGTTTTCACGCTAAAATATCTTCATCTT
TTCACAGATTGTGGATGGTTCAAAGGATAGGAAGTGTTCCAACTCCTTCC
TGCACTTCCGTCATTCGAGATGTTGAACAGCATAAGTACAACTTTTGAAC
TTCTGGTTCAATGATGGTCGTTTCCATTGGTGTATTCGCAGAACTTGCTT
CGTGGACACACTACGTGGTCACTTTCTCTCGTCTGGGAAGGCCATCTCTC
ATCAACGAGAGCCTATGCTGCTGTTCTTTCAAATTTCAATTCTATTTTTT
CGGTAGCTGCATAAAAAATCATCAGTGTAACCAGAGCTCTCTTATAAGAA
GCAGCAAACTTTTTTGAGGCTTAGCTGTTCTTATTTTTTGGCACTATGAA
CCTTAAGATATTCTGATCCTGCTCTTGTTTTAGGGAAAAATTTAAATATC
ATTCTTCTTAATTTGTTCTTAACATTTGACGCTTTAAAATTTCATTGTTG
TATTGAAAGATATGGAGTGCATTCAGATTGGATTTCCCCGAGTTCTCGTT
AAGTTTATTTTAGGTGTTTTAAAATCCATTTTGTTTTTCTGACTGTTTTA
TTTTTTATAAGATTTCTAAGATTTACCCAGATGATACATGTAGCAAATTT
AACCAGATTTTATTTATATCGATATTTTATAATTTTAATTCCTATTATTT
TATTGACAGATTATAAGATTTTACGAGATTTTTATTTTTTTGAATTTTGG
ATTGAAATTTTTAGTTTATAAATAAGTATAGAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033455XLOC_033455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052982-exon-scaffold_222-1575043694:551784..551946TCONS_00052982-exon-scaffold_222-1575043694:551784..551946Clytia hemisphaericaexon
TCONS_00052982-exon-scaffold_222-1575043694:545811..546539TCONS_00052982-exon-scaffold_222-1575043694:545811..546539Clytia hemisphaericaexon
TCONS_00052982-exon-scaffold_222-1510915933:551784..551946TCONS_00052982-exon-scaffold_222-1510915933:551784..551946Clytia hemisphaericaexon
TCONS_00052982-exon-scaffold_222-1510915933:545811..546539TCONS_00052982-exon-scaffold_222-1510915933:545811..546539Clytia hemisphaericaexon
TCONS_00052982-exon-scaffold_222-1491911889:551784..551946TCONS_00052982-exon-scaffold_222-1491911889:551784..551946Clytia hemisphaericaexon
TCONS_00052982-exon-scaffold_222-1491911889:545811..546539TCONS_00052982-exon-scaffold_222-1491911889:545811..546539Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:545811..551946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188622	0.253268	0.286045	0.05754	1.81906	2.35083	6.00279	4.2141	4.78187	4.75813	3.47038	3.51477	4.27798	5.78316	1.5857	1.4242	2.00129	2.21377	1.46446	1.75502	2.14591	2.55234	2.02398	2.9826	5.89684	5.3085	4.22117	2.49321	3.38454	3.97681
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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