TCONS_00052977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052977
Unique NameTCONS_00052977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2479

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052977 ID=TCONS_00052977|Name=TCONS_00052977|organism=Clytia hemisphaerica|type=transcript|length=2479bp
GGGCAGCCACTCTCCTTCAAAGCAATCAGGTCCCCGTAAAAGTAACAGTG
AATCAAACCTATTAGAGATGGGGGACAGTTTCTCACAAGGCGATACGCTA
CAACCAGAGATGCAACCGGCCATGCATCACGCATCAAGCTCAGGCGCCGT
CAATAATCCACAACAAACCAGTTATGATCCTTTCGGAGATTTCGGTAATT
TCGGCTCCTCATCAGCTCAATCAAACTCCGCATCCAACTTATTCAGTGGC
GGTGGAATGGCGTCCGCCCGCTCAAGCTCCGCCCGCTCCTCGCCGACTTT
TAACAAAAACCCTACTTCAACGACGCGGCcccaacaacagcaacaacgtC
CGACTGCGACGCAACAAAGCCGTCAATCGACAGCACCTAATTATAATGTC
TTCGTATCGAATAAACAAGATAGTGTGTTCGGGAAAGGAACGGCTACGCC
GACTGGAAGCGGAACATGGGgcTCTAAACCAATGAAAAACAATGATTTCA
GTGACATCTTGAATGCGCAAGGTTTCACCTCGGCCAACAAACAATCGGCA
ACCGGGCAAACACTAAAGCAAATGAAAAACGAAGCAGAAACTGTCGAAAT
GGACCCAGTCAAACGGGCTGTGCGCGAGTGGTCAGACGGTAAGGAGCGGA
ACATCCGAGCGCTCATTTCATCGCTACAGTCCATATTATGGGAGGAAGCT
AAGCAGAAATGGAAACCCATTGGCTTACACGACATCATGCAAGGGAACAA
GGTTAAAACATATTATCGTAAAGCATGCTTGGCTGTTCATCCTGACAAGC
ACATGGGCACGGAAAACGAGCAACTGGCGCGTGCTATCTTCTTAGAACTT
AACGAAGCTATGACTTTATTCGAAGAAAAGGGATCACAAAATATGTTTTA
AGATTTATAATAGACAATACCAAAAAATTAttagtttatttatttttttt
aacgaattttaatCATTTCGAATCTTTATGAATGTATATGTTGGATGGAT
ATGCTTAAGTTTTAATTGCTCTCACCGATTGCGTCAGCTGAGAAAACTTA
GACATAAAATGGAACGTCTTTATCGGGTTATTTGAAAACCGCTATGGGTG
AATACACGTATTTCCTATTagcggattcatgtaaaaaaagtcacgaaaaa
cgtcgagaaagtctctgattggctgaaatattgcatatacaggcaaattt
ttcaaaatgtccagagtatgaggtaatctttgcatgcctccgccaatcaa
aagtttgtttactcgacgttttttggtgacttttgcatgaatctgctaat
aggaaataggtgTATTATAAAAAGTCAGAAATAACTGAGATAATCCGGCC
GTGTGGGGTCCACCCTGATTTTACTTGTTATTTTAAAAACGCCTTTATTT
TGAAGGGGCTAAATTTTGATTCGACTGACCCCGAATGGACCATATTGATA
GAACCTAGTAAAATAAGATTTTGAGTATACAATCCAACTGATCCAAATTT
TTTGCACTGGGGAGCACCTAACAAATAAACATGATATTCATTGCACTGTC
AAATACTATTGGCACACATCAAATAATTGACAAATAGATAAATAGTTTTC
GTTTTTGACTATCAAAAGCTTTTCGGataatttttatttgcttgtaAAAA
Gcttcattgaaaaaaatatcaatgacgaagtatttttgaataaggcttga
taatttaaaatttctcaatttgtaatatatatttttctcgtCTCACTACA
TAATTTTTTCTGGGGTACATACATTTTTCATATGGTAATGCCTTTTCTTT
TACTCTTTTTTTTCGATGACACTTTGATCTTTAAGAGATCTTGATTGACA
AATCTTTAATTTTTCCTCGAATTGTGCTTAAATTTAAATTGTTGTGAATT
CTATGGAATGGGTGTAATGGTGTAATGAAAATACTCCGTTAAGAGGCGAT
GTATTGACGGGGAATTGACAATCCGTCTGTATTGGTTTTCGCTCTAAGGT
TTCTTCCGAAGTTGAAATCGTAATTATTCAAAACTCGGATGCTTTAGAGG
GACAAGAGGACTGAAGTACATAATGATAATTTTCTCTGTTAATTCctctc
atcaaaattatttttttataaatgaacTGAATATCTACTTGTGGCTTAGT
GAGtacttttttttacaagaagttTGTGGCATTAAAAGTCTTTCTGCGAA
GTTTAGTGTAGTCTTTGTTGTAGCCTTGTTAaatgttttctaatttttac
atTACACCGtgaaaaagaaacattcaaggatttgtttttaaataagagtg
atatcgtttgcttactcatcaattttaattcacaagctttttcacattga
attgacacggatgtggagcaagattggtcagaaagaggaaaaatatcAAT
AGGCATCACTggcctgatatgaaatatgtgtctgatataaaacgggaaca
cttatgtaaaaataagacCTTTAAATGCC
Run BLAST on NCBI

transcript from alignment at scaffold_222:460971..466934-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052977 ID=TCONS_00052977|Name=TCONS_00052977|organism=Clytia hemisphaerica|type=transcript|length=5964bp|location=Sequence derived from alignment at scaffold_222:460971..466934- (Clytia hemisphaerica)
GGGCAGCCACTCTCCTTCAAAGCAATCAGGTCCCCGTAAAAGTAACAGTG AATCAAACCTATTAGAGATGGGGGACAGTTTCTCACAAGGCGATACGCTA CAACCAGAGATGCAACCGGCCATGCATCACGCATCAAGCTCAGGCGCCGT CAATAATCGTAAGTCTTTCATTTCATAATACATGATATTGATTTTGTCCA TATCTACGTTTATTTTTTGTTCATCGTTAAAATCTATCTTAAATATACTC CCAGGAATTAATGATTAAAGAATAACCAGAAGCTTCAATGTTTTTTAACT GTATATTCGGCCTCATAACAAGAGATCATCAAAGTGTAAAAAGCTATCAA CGTTGTTTTTAATTTATATTTGGCTAATATAGGGTCATTTGGAGAAACTA TTTTTAAGAATTTACCATACCGTCACTTACTTGCAAAAACAGGAATGAAA AGTCATTTTCAGTGTTGATCCTTGACTTTGGCGTACACTTTGTAAATGGA TTTTATTTCCCTCACATACAGCACAACAAACCAGTTATGATCCTTTCGGA GATTTCGGTAATTTCGGCTCCTCATCAGCTCAATCAAACTCCGCATCCAA CTTATTCAGTGGCGGTGGAATGGCGTCCGCCCGCTCAAGCTCCGCCCGCT CCTCGCCGACTTTTAACAAAAACCCTACTTCAACGACGCGGCCCCAACAA CAGCAACAACGTCCGACTGCGACGCAACAAAGCCGTCAATCGACAGCACC TAATTATAATGTCTTCGTATCGAATAAACAAGATAGTGTGTTCGGGAAAG GAACGGCTACGCCGACTGGAAGCGGAACATGGGGTAAGCACATTGATTTC AAAGCCCCGAAGNGGGAAAGGAACGACTACGCCGACTGGAAGCGGAACAT GGGGTAAGCACATTGATTTCAAAGCCCCGAAGGGGCTAGATCCGAAACTC CTGGGTTGGAAACGAAGCCACTTATTTCCCATCCAGAACACGTGGTCCTT GTGTGTTTTAACAAAATTTCTAAATACGGGGCAAACTTAAGGCTTCGCTT TTTCTTGCTTGAGAAAGGCTGGAGATTCCTCTCTATAGCCTCTTCGGGGC CTTCAAACTCAATAGGTAAGAATATAGAGCAAGCTTTTTGTTTCTTTCTA AACGTGGAATAGTGTGTATACCAGTATTTAAGTATGGTATAAGACCAGTT GCGTTGCAGATGATATGACAGGTCTACTCCTTTCCTCCTCTCTTTAGTGC ATGCTCAAGAATTCAATACTCAATACTTTCGTCCGGAATCGTGTCCAGAA TCGTATAAGATTTCGGATATCTTTTCAAAATGTAGCGGAAATCAGACTAC TACATTAAACGTATCCTGAGTGGATAAAATTTCTGCTTTGATTTTTTCCG CAAATCAAGAATATAAGATTTATTTGTTAGCTCGATTTCATTTTTTTTAT TTTCCTGCTGGTTTTGGCCTAAACTCGGATTTCTAATTTGAGAGTCGATT GACGCGGAATAAGTTCATTCATTGTGTGTAAACGTCGTAACTTCTAGTTT TAATTTCTTCTTTTTTTAGGCTCTAAACCAATGAAAAACAATGATTTCAG TGACATCTTGAATGCGCAAGGTTTCACCTCGGCCAACAAACAATCGGCAA CCGGGCAAACACTAAAGCAAATGAAAAACGAAGCAGAAACTGTCGAAATG GACCCAGTCAAACGGGCTGTGAGTGTTTTAATATGACACCTTTGGGTAAT TGATTAGAGGGTGCCTATTTCTTGTTTCCCTCCTTTGTGTTTATTCGCCA TTAACGCCATTGCACCATTGCGATTTTTTCAATTCAGGATTCTCTCTCTA AATCCGGCTTCTTTGACTGCTGATTCAATGTCAAATTTAGAGTATCCTCT TTGTTCCCTTCGAGTAGTGGTGCCTGAACAAGTATTATGGTTTTTCTGCA CAGCCAAGCCCTACAGTCTGTTCCTCTAAAGAATCCTGCATTGTAAGATG TATGCGTAATTTGTCATTCTTTTTTAAAACATATGTAGTTAATTGCTGCG GTAAACAGAGAGGAATGAATACGTAGGGGTGGTACAGCTACTTTTTCTGG GTTGTGGATGGCGACATTTGTCGTTCTTTATGAAATTTGTCGTTCTTTTG TCCATTTTTTAGTAAATATAGGATTCTTTTATATAAACCCCCTCCCCTAT CATGCAGATTTACATGGGAGTATAACAGAAACAGAACTCCTCATGCTGCC TGTCATAAATCTATTAAAAAATTTTTATAATGCAGTCTCATAAAAAAGGC GAGGTGCCTTAACAGCTCATGCTTGTTTAAGAGGGACCTAAATTAAATGA AAGATCTCTCCCTTTCCCACGCTAGGTGCGCGAGTGGTCAGACGGTAAGG AGCGGAACATCCGAGCGCTCATTTCATCGCTACAGTCCATATTATGGGAG GAAGCTAAGCAGAAATGGAAACCCATTGGCTTACACGACATCATGCAAGG GAACAAGGTTAGTGAAGTTTATAATATTTTATATGTCTTAGAATTGAGGT TGAAGGTTTCAGTTTTTTATGTCAGATTGTACGCGAGGCTGGGATAAAGT TTGTCTTTTTTAGAAATTGGAGTACTAACTAAGGAAAAATTCGAAAATTA GTATTTGATTACATTAGTTCCTGAATGAAGCAATGTTAGGGAATGAAAAG TGAAAAGAGTTTATTATATGGACAAAGTATATTACAAGCACATAAAACTG ACACCTAAGCCTGAACAACCATTCATGCACGAACGAAAAACTCGCACAAT ATAGTACAAATGCACGGACGCATCACACAATTAACCAAGCTCAAACCAAG AAGTGAAACTCAGGAAATCAAAAAGGCAGAACCACTAGGTAGACTGAACA ACTGTTGGAAGCATGAAGCATGAAAAGTTTTCCTTGCCATTTTTGCCAAG TCAAAAAAAGAAATCACATGAATGAAGGAAGAGAAAAAGTGAAAAGATAA GCGAATGCGCATTGACATTTTGACAGAAGAGCTGCAAGTGCAAGTCACAG AGAGTACGTATTTATTTGGGACAGGCTGGAGTTTTTACAAGCTTTTATTT GATTTGGTTGGTCGTTAAGATGTAATAAAAGAATCTTATTACTTTTTCTA AAGAACGCGTCATCTCTATCACTTTAAATNGCAGAAATGGAAACCCATTG GCTTACACGACATCATGCAAGGGAACAAGGTTAGTGAAGTTTATAATATT TTATATGTCTTAGAATTGAGGTTGAAGGTTTCAGTTTTTTATGTCAGATT GTACGCGAGGCTGGGATAAAGTTTGTCTTTTTTAGAAATTGGAGTACTAA CTAAGGAAAAATTCGAAAATTAGTATTTGATTACATTAGTTCCTGAATGA AGCNATTTCAAGCAATTCTTGATATTCATGATGTAATCTTTTATACGGAA ACACACGAAAAACACCGGGCGTTTGCCACCAGTTTCATTATTTAAATGCA AACGCCCGGTGTTTTTGCGGCTGTTTCCGTATGAATATCAAGAATACATC AGGATTTCTACAATCAAACCGACGTTTAAAAAAATTTATTTCCTCTTCGA GAATGATTCCCTTCAAGACTTTTCTTCTTCTATCATAGGTTAAAACATAT TATCGTAAAGCATGCTTGGCTGTTCATCCTGACAAGGTGAGGAGAAACAT TTGTTGTACTATTGTTTTTTTTTACTATTGGTCTTGACCCACCCTCTAGG GCTCCCTCTAGACCTTGTCATGGACAAGAAGGTTTCATTCAAATCCCGTC TAACGAGCGAATATTTTTCATCCTTTATTAAATGGTATCCATTCCACATA ATTAACACTTACATCATCACAACTAGTCCTCTCTGTAAGTGTAAGTGTCT TCAGAGGTGACTGTAACAGTCAAAAATGGACTAGGTCGGATTTGTTCGAG TTATAAGGGTCCCTTTTTTAAACTCTTTGTAAGTCTACTCAAATAGGTAA AAAAACATAAATTAGCGATTGTGTTTCTGACAGGGTCCCAAAATTACAAA ATATCAAAAATCGATGCCCTCATACGGTCATAAATTTTTGCAATTTAAAA ATGTTGGCTGAAAATTGGAAAAATAGTCCCTGAAAGGGTTTTAAAAAACT TCCGAAAATTAATCTCTCAAAGGATCTATTTTCAGACTTAGCTCGAAGAT ACCCGCCACCTCGCAAATTTAGTACCCCCGGGCTCTTTGTACGGTTTTCT TGACTACATTATTTTCTTTTCTTTTCACTTTCAGCACATGGGCACGGAAA ACGAGCAACTGGCGCGTGCTATCTTCTTAGAACTTAACGAAGCTATGACT TTATTCGAAGAAAAGGGATCACAAAATATGTTTTAAGATTTATAATAGAC AATACCAAAAAATTATTAGTTTATTTATTTTTTTTAACGAATTTTAATCA TTTCGAATCTTTATGAATGTATATGTTGGATGGATATGCTTAAGTTTTAA TTGCTCTCACCGATTGCGTCAGCTGAGAAAACTTAGACATAAAATGGAAC GTCTTTATCGGGTTATTTGAAAACCGCTATGGGTGAATACACGTATTTCC TATTAGCGGATTCATGTAAAAAAAGTCACGAAAAACGTCGAGAAAGTCTC TGATTGGCTGAAATATTGCATATACAGGCAAATTTTTCAAAATGTCCAGA GTATGAGGTAATCTTTGCATGCCTCCGCCAATCAAAAGTTTGTTTACTCG ACGTTTTTTGGTGACTTTTGCATGAATCTGCTAATAGGAAATAGGTGTAT TATAAAAAGTCAGAAATAACTGAGATAATCCGGCCGTGTGGGGTCCACCC TGATTTTACTTGTTATTTTAAAAACGCCTTTATTTTGAAGGGGCTAAATT TTGATTCGACTGACCCCGAATGGACCATATTGATAGAACCTAGTAAAATA AGATTTTGAGTATACAATCCAACTGATCCAAATTTTTTGCACTGGGGAGC ACCTAACAAATAAACATGATATTCATTGCACTGTCAAATACTATTGGCAC ACATCAAATAATTGACAAATAGATAAATAGTTTTCGTTTTTGACTATCAA AAGCTTTTCGGATAATTTTTATTTGCTTGTAAAAAGCTTCATTGAAAAAA ATATCAATGACGAAGTATTTTTGAATAAGGCTTGATAATTTAAAATTTCT CAATTTGTAATATATATTTTTCTCGTCTCACTACATAATTTTTTCTGGGG TACATACATTTTTCATATGGTAATGCCTTTTCTTTTACTCTTTTTTTTCG ATGACACTTTGATCTTTAAGAGATCTTGATTGACAAATCTTTAATTTTTC CTCGAATTGTGCTTAAATTTAAATTGTTGTGAATTCTATGGAATGGGTGT AATGGTGTAATGAAAATACTCCGTTAAGAGGCGATGTATTGACGGGGAAT TGACAATCCGTCTGTATTGGTTTTCGCTCTAAGGTTTCTTCCGAAGTTGA AATCGTAATTATTCAAAACTCGGATGCTTTAGAGGGACAAGAGGACTGAA GTACATAATGATAATTTTCTCTGTTAATTCCTCTCATCAAAATTATTTTT TTATAAATGAACTGAATATCTACTTGTGGCTTAGTGAGTACTTTTTTTTA CAAGAAGTTTGTGGCATTAAAAGTCTTTCTGCGAAGTTTAGTGTAGTCTT TGTTGTAGCCTTGTTAAATGTTTTCTAATTTTTACATTACACCGTGAAAA AGAAACATTCAAGGATTTGTTTTTAAATAAGAGTGATATCGTTTGCTTAC TCATCAATTTTAATTCACAAGCTTTTTCACATTGAATTGACACGGATGTG GAGCAAGATTGGTCAGAAAGAGGAAAAATATCAATAGGCATCACTGGCCT GATATGAAATATGTGTCTGATATAAAACGGGAACACTTATGTAAAAATAA GACCTTTAAATGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033454XLOC_033454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052977-exon-scaffold_222-1575043694:466777..466934TCONS_00052977-exon-scaffold_222-1575043694:466777..466934Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1575043694:466102..466413TCONS_00052977-exon-scaffold_222-1575043694:466102..466413Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1575043694:465217..465365TCONS_00052977-exon-scaffold_222-1575043694:465217..465365Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1575043694:464428..464559TCONS_00052977-exon-scaffold_222-1575043694:464428..464559Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1575043694:463249..463296TCONS_00052977-exon-scaffold_222-1575043694:463249..463296Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1575043694:460971..462650TCONS_00052977-exon-scaffold_222-1575043694:460971..462650Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:466777..466934TCONS_00052977-exon-scaffold_222-1510915933:466777..466934Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:466102..466413TCONS_00052977-exon-scaffold_222-1510915933:466102..466413Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:465217..465365TCONS_00052977-exon-scaffold_222-1510915933:465217..465365Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:464428..464559TCONS_00052977-exon-scaffold_222-1510915933:464428..464559Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:463249..463296TCONS_00052977-exon-scaffold_222-1510915933:463249..463296Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1510915933:460971..462650TCONS_00052977-exon-scaffold_222-1510915933:460971..462650Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:466777..466934TCONS_00052977-exon-scaffold_222-1491911889:466777..466934Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:466102..466413TCONS_00052977-exon-scaffold_222-1491911889:466102..466413Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:465217..465365TCONS_00052977-exon-scaffold_222-1491911889:465217..465365Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:464428..464559TCONS_00052977-exon-scaffold_222-1491911889:464428..464559Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:463249..463296TCONS_00052977-exon-scaffold_222-1491911889:463249..463296Clytia hemisphaericaexon
TCONS_00052977-exon-scaffold_222-1491911889:460971..462650TCONS_00052977-exon-scaffold_222-1491911889:460971..462650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:460971..466934 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.717969 0.700727 0.246317 0.53383 0 0 0 0 1.14619 1.65055 1.07865 0.623529 0.611384 0.45524 0.643168 1.24832 1.20972 0.905739 0.595926 0.8391 1.09434 0.785362 0.871383 1.49557 0 0 1.37763 1.2216 1.23421 1.89029
Blast
BLAST of TCONS_00052977 vs. Swiss-Prot (Human)
Match: AUXI (Putative tyrosine-protein phosphatase auxilin OS=Homo sapiens GN=DNAJC6 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 6.042e-32
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:  485 KNNDFSDILNAQGFTSANKQSATGQTLKQMKNEAETVEMDPVKRAVREWSDGKERNIRALISSLQSILWEEAKQKWKPIGLHDIMQGNKVKTYYRKACLAVHPDKHMGTENEQLARAIFLELNEAMTLFEEKGSQNMF 898
            K  DF D+L+ QGF +A+K     +T+ +M+ E    EMDP K  + EW +GKERNIRAL+S++ ++LW   + KWKP+G+ D++   +VK  YRKA L VHPDK  G   EQ A+ IF+ELN+A + FE +G + ++
Sbjct:  778 KAADFEDLLSGQGF-NAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWA-GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 913          
The following BLAST results are available for this feature:
BLAST of TCONS_00052977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AUXI6.042e-3245.65Putative tyrosine-protein phosphatase auxilin OS=H... [more]
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