TCONS_00052974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052974
Unique NameTCONS_00052974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052974 ID=TCONS_00052974|Name=TCONS_00052974|organism=Clytia hemisphaerica|type=transcript|length=1651bp
aggtttttaaaaaatgaaaatacatgagacttttttaaaagattgataat
ttttttgcagAATATTGAGATTTGATTTCAAAGTCACCGTAAACCCatat
tttcgaagaaaaaaagaCATAAATCGCGCTACGGCATTTACCGTGTATGG
ATGACATCATGTATTGGATGGTAGCAGCCGTCGTCGTTGACGGTTTTGTC
ATGGCACTAAATATCATTGAACTCATGTTACTGTTACGTCGATGGAAACG
GCTAGATCGTATCGAGCACATTCTATTCAGTTTATGTGTTGCAGACTTAA
TTTGTGGTATAGCCATGTTTGGACAGGACACGTACCAGTTACGAGCTATC
GCTTTAAATTTACCATTAGATATTACAACCACGGAATCATTAATCCTTGA
ATGTTTAATCATCTTCTTCATCCTCGTTTCACATTTCCACGTCACTGCCG
TAGCTATTGAACGAATATTCGCCGTATCGATGCCAATGAGGTATACAGTT
TTCACAACAAAttcttgtaaaattttaactatCAGTTTAGTATGGGTTAT
TGCTTTAATCATCGCACCCATACTAACTTCGACATCAAAAGCTTACCAAT
CAGGGCAATACGTTTTAGCATCAGCCATTATCATATGTTGTACATTAGTA
TTTTTCAGCTATATGGCACTGGTGGTGCTTCTCATACGTCGGGAAAGAAC
AATGCGTTCTCTTTTGGAGCCGGAATTCAAGCGCCAGTTACGGGATCGCC
GGACAACAATTTTCTGTCTCGTATTCGGGTTTTCGTTCTTAATTTGTATG
CTACCTTACGCTATCGGGTTACTGCAACAATCTTTATTTCACGAAACACA
GATTTTATTATTAACAGCATATCATTTGGTCAACCCTATTGTTTATTTtg
tgaaatattattttaatgGGCGTGGTCGATCCAATACCATTACAAGTAAT
TCGAAAATGAGTCATAATAACTTATTAAACCGTTCACCATTGACGACGAG
AAGTACTTTTATTATGCATGGTGATTCAACCAATAGCTTTAAAGCTTGAA
AATTGATTGACCAATGGGTTTTGGGCTGGTGAATGGATTGGCCAATAGCG
TTTGAGCTTGTTAATGGATTAGTGAAGTTCATAATGCACGGTGATTTGAC
CAATATTTGGATTGACCAATAGATTTCGAGCTTGAAAATGGATTGCCCAA
TAGTGTTTGAGCTTGTAAATGTTAATGGGTTGATCAACAGTTCATAAAGC
AAGGTGATTCGACCAATAGTTTCAGGACTTTCAGCTTGACCAATAGCTTT
CGAGCTTGTTAATTGATTGACCAAAGGCTTTAATGTTGTGACACTGGTTA
GACCAATAAAGACGTGCAAGGTTTCAATTTGTGGAGTTTTGAGAATTAGG
GGATTCTGTGAAGGAGGCTTTccaagcggtttgcgtgatggcgtgatagg
gactttcttgtagcgtgattacgtgatttggaaattttttcttcgtgatt
gcgtgatgagaggtcaaaacgtgatcgtgaatttgaaaaattttcgagcc
gtgatacgtgatttggactttttcaaaaggATGCGTGATTAGccattttt
tgctgatttgtgcgatatcgtgatcagagtttccgccggtgggggggggg
g
Run BLAST on NCBI

protein sequence of TCONS_00052974-protein

>TCONS_00052974-protein ID=TCONS_00052974-protein|Name=TCONS_00052974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MDDIMYWMVAAVVVDGFVMALNIIELMLLLRRWKRLDRIEHILFSLCVAD
LICGIAMFGQDTYQLRAIALNLPLDITTTESLILECLIIFFILVSHFHVT
AVAIERIFAVSMPMRYTVFTTNSCKILTISLVWVIALIIAPILTSTSKAY
QSGQYVLASAIIICCTLVFFSYMALVVLLIRRERTMRSLLEPEFKRQLRD
RRTTIFCLVFGFSFLICMLPYAIGLLQQSLFHETQILLLTAYHLVNPIVY
FVKYYFNGRGRSNTITSNSKMSHNNLLNRSPLTTRSTFIMHGDSTNSFKA
Run BLAST on NCBI

transcript from alignment at scaffold_222:431698..434029-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052974 ID=TCONS_00052974|Name=TCONS_00052974|organism=Clytia hemisphaerica|type=transcript|length=2332bp|location=Sequence derived from alignment at scaffold_222:431698..434029- (Clytia hemisphaerica)
AGGTTTTTAAAAAATGAAAATACATGAGACTTTTTTAAAAGATTGATAAT
TTTTTTGCAGAATATTGAGATTTGATTTCAAAGTCACCGTAAACCCATAT
TTTCGAAGAAAAAAAGACATAAATCGCGCTACGGCATTTACCGTGTATGG
ATGACATCATGTATTGGATGGTAGCAGCCGTCGTCGTTGACGGTTTTGTC
ATGGCACTAAATATCATTGAACTCATGTTACTGTTACGTCGATGGAAACG
GCTAGATCGTATCGAGCACATTCTATTCAGTTTATGTGTTGCAGACTTAA
TTTGTGGTATAGCCATGTTTGGACAGGACACGTACCAGTTACGAGCTATC
GCTTTAAATTTACCATTAGATATTACAACCACGGAATCATTAATCCTTGA
ATGTTTAATCATCTTCTTCATCCTCGTTTCACATTTCCACGTCACTGCCG
TAGCTATTGAACGAATATTCGCCGTATCGATGCCAATGAGGTATACAGTT
TTCACAACAAATTCTTGTAAAATTTTAACTATCAGTTTAGTATGGGTTAT
TGCTTTAATCATCGCACCCATACTAACTTCGACATCAAAAGCTTACCAAT
CAGGGCAATACGTTTTAGCATCAGCCATTATCATATGTTGTACATTAGTA
TTTTTCAGCTATATGGCACTGGTGGTGCTTCTCATACGTCGGGAAAGAAC
AATGCGTTCTCTTTTGGAGCCGGAATTCAAGCGCCAGTTACGGGATCGCC
GGACAACAATTTTCTGTCTCGTATTCGGGTTTTCGTTCTTAATTTGTATG
CTACCTTACGCTATCGGGTTACTGCAACAATCTTTATTTCACGAAACACA
GATTTTATTATTAACAGCATATCATTTGGTCAACCCTATTGTTTATTTTG
TGAAATATTATTTTAATGGGCGTGGTCGATCCAATACCATTACAAGTAAT
TCGAAAATGAGTCATAATAACTTATTAAACCGTTCACCATTGACGACGAG
AAGTACTTTTATTATGCATGGTGATTCAACCAATAGCTTTAAAGCTTGAA
AATTGATTGACCAATGGGTTTTGGGCTGGTGAATGGATTGGCCAATAGCG
TTTGAGCTTGTTAATGGATTAGTGAAGTTCATAATGCACGGTGATTTGAC
CAATATTTGGATTGACCAATAGATTTCGAGCTTGAAAATGGATTGCCCAA
TAGTGTTTGAGCTTGTAAATGTTAATGGGTTGATCAACAGTTCATAAAGC
AAGGTGATTCGACCAATAGTTTCAGGACTTTCAGCTTGACCAATAGCTTT
CGAGCTTGTTAATTGATTGACCAAAGGCTTTAATGTTGTGACACTGGTTA
GACCAATAAAGACGTGCAAGGTTTCAATTTGTGGAGTTTTGAGAATTAGG
GTAATTAAATATTTTTAATTAATGATGGGCTATCTTTTTTTAAATCATTG
AAAATGATTCACCAGGCTGCGGGCAAGAAAAATTAAAAGAAAATCCGTGA
AATATTAAATGAATTTACCGCTGTAATCTTTCAATATTTAACTGTAAAAA
GCTGAAAATTTTGTATAAATCAAAAATACACGGTGAATTTTCGTAGGTTT
TTTCCTGCGTTCATCGCTAGGTTAATTTTATTTTTAAGAAAGAAATTTTT
TATAGGGGATCGAAAGCCATACACTGGCCTTTATACACCCCTTCTCACAG
GACCGGCGGGACCCCCTTATCGTCCCCAGTGGAAAATTTTACTCATGTTT
GTCAAAATATGGGAATATTAATCCCCATCGATTTTCAATCGATATTCTTA
CCGCCACTGAAAAAATCCTACCAGGTCTGTGAGAAGGGGACGCCTTTATC
TTAGTCCAAACAAACCATTGGTTATTTCTGTTCGTTCGTTTATCTCAGCA
TTACCTTCCAGGAAATGCTTATGCATCGGTTTGGATCCTGCTAGACGAAA
TTTTCAACCATGACAGACGAAATATTGGTCCTGTCAGATACTAAATCTGA
CTTAGGAAGTGGTGAAAATGACCTAAGTCATCTCAGTCAAATAACGATTT
TAACCTATCAGCTATTTTTTCAAATCCTTAGGGATTCTGTGAAGGAGGCT
TTCCAAGCGGTTTGCGTGATGGCGTGATAGGGACTTTCTTGTAGCGTGAT
TACGTGATTTGGAAATTTTTTCTTCGTGATTGCGTGATGAGAGGTCAAAA
CGTGATCGTGAATTTGAAAAATTTTCGAGCCGTGATACGTGATTTGGACT
TTTTCAAAAGGATGCGTGATTAGCCATTTTTTGCTGATTTGTGCGATATC
GTGATCAGAGTTTCCGCCGGTGGGGGGGGGGG

Coding sequence (CDS) from alignment at scaffold_222:431698..434029-

>TCONS_00052974 ID=TCONS_00052974|Name=TCONS_00052974|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_222:431698..434029- (Clytia hemisphaerica)
ATGGATGACATCATGTATTGGATGGTAGCAGCCGTCGTCGTTGACGGTTT
TGTCATGGCACTAAATATCATTGAACTCATGTTACTGTTACGTCGATGGA
AACGGCTAGATCGTATCGAGCACATTCTATTCAGTTTATGTGTTGCAGAC
TTAATTTGTGGTATAGCCATGTTTGGACAGGACACGTACCAGTTACGAGC
TATCGCTTTAAATTTACCATTAGATATTACAACCACGGAATCATTAATCC
TTGAATGTTTAATCATCTTCTTCATCCTCGTTTCACATTTCCACGTCACT
GCCGTAGCTATTGAACGAATATTCGCCGTATCGATGCCAATGAGGTATAC
AGTTTTCACAACAAATTCTTGTAAAATTTTAACTATCAGTTTAGTATGGG
TTATTGCTTTAATCATCGCACCCATACTAACTTCGACATCAAAAGCTTAC
CAATCAGGGCAATACGTTTTAGCATCAGCCATTATCATATGTTGTACATT
AGTATTTTTCAGCTATATGGCACTGGTGGTGCTTCTCATACGTCGGGAAA
GAACAATGCGTTCTCTTTTGGAGCCGGAATTCAAGCGCCAGTTACGGGAT
CGCCGGACAACAATTTTCTGTCTCGTATTCGGGTTTTCGTTCTTAATTTG
TATGCTACCTTACGCTATCGGGTTACTGCAACAATCTTTATTTCACGAAA
CACAGATTTTATTATTAACAGCATATCATTTGGTCAACCCTATTGTTTAT
TTTGTGAAATATTATTTTAATGGGCGTGGTCGATCCAATACCATTACAAG
TAATTCGAAAATGAGTCATAATAACTTATTAAACCGTTCACCATTGACGA
CGAGAAGTACTTTTATTATGCATGGTGATTCAACCAATAGCTTTAAAGCT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033453XLOC_033453Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052974-proteinTCONS_00052974-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052974-exon-scaffold_222-1575043694:432630..434029TCONS_00052974-exon-scaffold_222-1575043694:432630..434029Clytia hemisphaericaexon
TCONS_00052974-exon-scaffold_222-1575043694:431698..431948TCONS_00052974-exon-scaffold_222-1575043694:431698..431948Clytia hemisphaericaexon
TCONS_00052974-exon-scaffold_222-1510915933:432630..434029TCONS_00052974-exon-scaffold_222-1510915933:432630..434029Clytia hemisphaericaexon
TCONS_00052974-exon-scaffold_222-1510915933:431698..431948TCONS_00052974-exon-scaffold_222-1510915933:431698..431948Clytia hemisphaericaexon
TCONS_00052974-exon-scaffold_222-1491911889:432630..434029TCONS_00052974-exon-scaffold_222-1491911889:432630..434029Clytia hemisphaericaexon
TCONS_00052974-exon-scaffold_222-1491911889:431698..431948TCONS_00052974-exon-scaffold_222-1491911889:431698..431948Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:431698..434029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.398374	0.454995	0.422561	1.29933	0.333785	0.229805	0.108628	0.345483	0.182742	0.315119	0.628429	0.218893	2.13969	0.905723	0.76765	2.00487	1.49339	2.23201	3.50974	4.42427	1.80871	1.96368	2.76058	3.20559	1.40472	2.72661	0.651801	0.740975	1.22521	0.984779
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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