|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052969 ID=TCONS_00052969|Name=TCONS_00052969|organism=Clytia hemisphaerica|type=transcript|length=2485bpRun BLAST on NCBI protein sequence of TCONS_00052969-protein >TCONS_00052969-protein ID=TCONS_00052969-protein|Name=TCONS_00052969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp MNFVEYGYRASNVPKNHVEVIRSGGCWSMVGMTGGRQSLSIGNGCLWEGTRun BLAST on NCBI transcript from alignment at scaffold_222:341904..364828- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052969 ID=TCONS_00052969|Name=TCONS_00052969|organism=Clytia hemisphaerica|type=transcript|length=22925bp|location=Sequence derived from alignment at scaffold_222:341904..364828- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_222:341904..364828- >TCONS_00052969 ID=TCONS_00052969|Name=TCONS_00052969|organism=Clytia hemisphaerica|type=CDS|length=5904bp|location=Sequence derived from alignment at scaffold_222:341904..364828- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052969 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 131.724 bits (330), Expect = 1.636e-31 Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 1
Query: 133 INDANKDLDKEHFEEGDI----VKVQNAALKKDWGQWPNGIVPYTISTVYDSVEKNKIRAAVNKIQQ--AAPCMNFVEYGYRASNVPKNHVEVIRSGGCWSMVG-MTGGRQSLSIGNGCLWEGTIIHEFLHAIGFYHEQSRPDRDQYVDIITKNIVGGREHNFKIASR--INSLGVEYDRVSVMHYSKGAFSNGNGNTIEWKANPKLSLGGNKL--SEKDIMQINLKY 783
I D N+ L + FE GDI +++N+ + + + +WP+ I PY + DS+E N +N ++ C++F + N++ V + GCWS VG G+Q LSIG C T+ HEFLHA+GF+HEQSR DRD YV I+ I+ GREHNF S +SL V YD SVMHYSK AF NG TI + + + G ++ S+ D++++N Y
Sbjct: 37 IFDINEGLGLDLFE-GDIRLDRAQIRNSIIGEKY-RWPHTI-PYVLE---DSLEMNAKGVILNAFERYRLKTCIDFKPWAGET-----NYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253 The following BLAST results are available for this feature:
BLAST of TCONS_00052969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.