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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052965 ID=TCONS_00052965|Name=TCONS_00052965|organism=Clytia hemisphaerica|type=transcript|length=865bp
CCAATAATAACATTACACATACAGATTAATtttctggttcttataaaaaa
gagtgtatgtaCCTGTTTAATCGAGGCATCTTTGATGTTTCTCTTTCTTG
ACTTCAAATTGGTATTCTTGTCCGTCGTGTTATCCAGTGTCTAAAGAGAA
AGCGTAATTCGACTTCACAATCCGATGCACCTTTTCACCACTTGCCCCAC
CAcaaagtatttattttttttctcgcatAAATTATCCAAaccatatttgt
ttacattaTTAACGTCACGTGACCCTTGTTGCGAAGTTGAAGGTATGGTT
TTACTTCCCAACTTATAATTCACGGACATTCTTCTGAAAATCTTGAGTAG
TAAGCCCGACCACAATACCAAGATGGTAGACAACAGAAACTTGCTATATT
TactatcattttcaaagttttcatggtATGTTGCATGCATTTTTGGCAGT
AGCAGTTACAGCATTTATAGTAAGTGAAACAAATAGGCCCCAAGAAACGA
CTCGATATATTCTGTGCTCTATACCCGACGGACCTCACACTACGTCGCGA
CAAACAAGATTGGCTGAATCAAATGCTCTTTTCGATCAAATTACACGTGT
TGGGCTCAACGAGCTGGACAGATgaatatcatcaaatcaaactgAAGTAT
ACTGAAGTAAGTATTTGTCAAAAAACGGCTTTGAAGGGTGAAAACCTTTA
TTCACTTCATTTTTGATGTATGATATTAATGTTTTTCCAAATCCATCAAA
TATGTGATattttggtatgcaatatgaccatgttttgagaaagtcgaaTT
TCAGACTTAATTAGCCACTACCATAAATGAGCtttgaaatagaactttga
ggAATGATTTTTTTG Run BLAST on NCBI transcript from alignment at scaffold_222:282130..283428- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052965 ID=TCONS_00052965|Name=TCONS_00052965|organism=Clytia hemisphaerica|type=transcript|length=1299bp|location=Sequence derived from alignment at scaffold_222:282130..283428- (Clytia hemisphaerica)
CCAATAATAACATTACACATACAGATTAATTTTCTGGTTCTTATAAAAAA
GAGTGTATGTACCTGTTTAATCGAGGCATCTTTGATGTTTCTCTTTCTTG
ACTTCAAATTGGTATTCTTGTCCGTCGTGTTATCCAGTGTCTAAAGAGAA
AGCGTAATTGTAAGTTTTCATGGATTCCCGCTCTTCTTAAAATTTCTGAT
AAAAAAATTACAAAAAATTTCATGGCAAGGATTTTTTTAGGAGCTATAAC
TTAAAAATACGATCACATAAAAAAGCCTTAAAATGAAAAAAATCACTATT
CATTACTAAAAAAAAACAGCGAATCACTAGATCTTAAAACTTGCCTCTGC
CTGCTTATTCTTTGGTGTCGACTTTTTTGGAGGTTTGAATTTTGGCTTAG
TTTTGCTTTTGATGTCTTTGATGTTGTGTTCTTCTTCAGTAAACGGTTGA
ACATATTTTTTTGGGAAAATTAACTTCGGAACTCTTGGTTCTTCAATTGC
TGTAGCATCAATTGTTTGACAACAAAATTCTGACAATGTTTTAAAACTCA
TTATTCTTAATTCAATATTTATTTATTCTACCACCACGCAAAGCGACTTC
ACAATCCGATGCACCTTTTCACCACTTGCCCCACCACAAAGTATTTATTT
TTTTTCTCGCATAAATTATCCAAACCATATTTGTTTACATTATTAACGTC
ACGTGACCCTTGTTGCGAAGTTGAAGGTATGGTTTTACTTCCCAACTTAT
AATTCACGGACATTCTTCTGAAAATCTTGAGTAGTAAGCCCGACCACAAT
ACCAAGATGGTAGACAACAGAAACTTGCTATATTTACTATCATTTTCAAA
GTTTTCATGGTATGTTGCATGCATTTTTGGCAGTAGCAGTTACAGCATTT
ATAGTAAGTGAAACAAATAGGCCCCAAGAAACGACTCGATATATTCTGTG
CTCTATACCCGACGGACCTCACACTACGTCGCGACAAACAAGATTGGCTG
AATCAAATGCTCTTTTCGATCAAATTACACGTGTTGGGCTCAACGAGCTG
GACAGATGAATATCATCAAATCAAACTGAAGTATACTGAAGTAAGTATTT
GTCAAAAAACGGCTTTGAAGGGTGAAAACCTTTATTCACTTCATTTTTGA
TGTATGATATTAATGTTTTTCCAAATCCATCAAATATGTGATATTTTGGT
ATGCAATATGACCATGTTTTGAGAAAGTCGAATTTCAGACTTAATTAGCC
ACTACCATAAATGAGCTTTGAAATAGAACTTTGAGGAATGATTTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052965-exon-scaffold_222-1575043694:283270..283428 | TCONS_00052965-exon-scaffold_222-1575043694:283270..283428 | Clytia hemisphaerica | exon |
| TCONS_00052965-exon-scaffold_222-1575043694:282130..282835 | TCONS_00052965-exon-scaffold_222-1575043694:282130..282835 | Clytia hemisphaerica | exon |
| TCONS_00052965-exon-scaffold_222-1510915933:283270..283428 | TCONS_00052965-exon-scaffold_222-1510915933:283270..283428 | Clytia hemisphaerica | exon |
| TCONS_00052965-exon-scaffold_222-1510915933:282130..282835 | TCONS_00052965-exon-scaffold_222-1510915933:282130..282835 | Clytia hemisphaerica | exon |
| TCONS_00052965-exon-scaffold_222-1491911889:283270..283428 | TCONS_00052965-exon-scaffold_222-1491911889:283270..283428 | Clytia hemisphaerica | exon |
| TCONS_00052965-exon-scaffold_222-1491911889:282130..282835 | TCONS_00052965-exon-scaffold_222-1491911889:282130..282835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:282130..283428 - |
Blast
The following BLAST results are available for this feature:
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