|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052956 ID=TCONS_00052956|Name=TCONS_00052956|organism=Clytia hemisphaerica|type=transcript|length=2109bpRun BLAST on NCBI transcript from alignment at scaffold_222:153820..189680- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052956 ID=TCONS_00052956|Name=TCONS_00052956|organism=Clytia hemisphaerica|type=transcript|length=35861bp|location=Sequence derived from alignment at scaffold_222:153820..189680- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052956 vs. Swiss-Prot (Human)
Match: CEAM5 (Carcinoembryonic antigen-related cell adhesion molecule 5 OS=Homo sapiens GN=CEACAM5 PE=1 SV=3) HSP 1 Score: 83.1889 bits (204), Expect = 2.167e-16 Identity = 143/591 (24.20%), Postives = 244/591 (41.29%), Query Frame = 2
Query: 233 SLIFDPVLTKDAGKYSCH-IKSNFDIERKSAPITLNVTLNNVTVRSVET-PV--GGSAKFTCKVNPQETNVTFQWFRNSQLIP-------GQTSQNITFEKIPFDWDGSEVTCRATANGISGEGAGTLKIRALTRVDL-TISPSNP--FEGDTIIFNCSVPETDSDITSWTFRKGDTVLQTGSNHQFNLTSSATLADNEIYTCEATHNSSASMN-STGQTLSVQELFAKPTISFGSKSAFKTGDKVVISCSTIVRKENTEASYSIRNKNNEEISAT---------KNITIDPIKTGNQGDHSCRVTANGITKDSGTKILFVNLGLSIPTSAT----VNEGSALSINCTLGGGESGASFTWTENESTIPGQTSQMLRIENVNRTMHQSEYKCNAVLGGFNAASNTANLTVN------YLDKPTIAGNT--KVNEHDVLSLQCVSTGRPTITTYKWFLNGTEIVDATSQRYEKAGFEQSM---------SGDYSCEVSNGELNQKSDNVAVMALYLGTPTITVNPTDGIPVKENNNLTLTCNIASATSLNRSSLNYNWTKGGESLSTNQVLELVNIKKQDAGNYTCTVTSDAT 1870
SL+ ++ D G Y+ H IKS+ E + + L ++ S + PV + FTC+ P+ + T+ W+ N+Q +P ++ +T + + D + C T N +S + ++ + L D TISP N G+ + +C SW F G Q + F + T+ ++ YTC+A HNS +N +T T++V KP I+ + + + D V ++C + +NT + + NN+ + + + +T+ + + G + C + S IL V G PT + G LS++C A ++W + + Q +Q L I N+ + Y C A N+AS + TV L KP+I+ N V + D ++ C + TTY W++NG + S R + + +++ + Y C + N +SD V + LY G T ++P D NL L+C+ AS S Y+W G QVL + I + G Y C V++ AT
Sbjct: 106 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCE--PETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN-DTASYKCE-TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW-FVNG--TFQQSTQELF--IPNITVNNSGSYTCQA-HNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEI--QNTTYLWWV---NNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNKLSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCH-AASNPPAQYSWLIDGNI--QQHTQELFISNITE-KNSGLYTCQA----NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQ--NTTYLWWVNGQSL--PVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLY-GPDTPIISPPDSS-YLSGANLNLSCHSAS-----NPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLAT 662 The following BLAST results are available for this feature:
BLAST of TCONS_00052956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.