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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052951 ID=TCONS_00052951|Name=TCONS_00052951|organism=Clytia hemisphaerica|type=transcript|length=3262bpRun BLAST on NCBI transcript from alignment at scaffold_222:131073..152736- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052951 ID=TCONS_00052951|Name=TCONS_00052951|organism=Clytia hemisphaerica|type=transcript|length=21664bp|location=Sequence derived from alignment at scaffold_222:131073..152736- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052951 vs. Swiss-Prot (Human)
Match: PTPRS (Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3) HSP 1 Score: 538.88 bits (1387), Expect = 1.916e-165 Identity = 272/531 (51.22%), Postives = 346/531 (65.16%), Query Frame = 3
Query: 1449 YHNVPAYDDTRVTLNVMDGESHTDYINANYIDGYERNREYIATQGPLPETIFDFWRMAWESDSTAIVMLTRIEEKGRIKCAHYWPDNGSMALKDILITMTDSQEFPDHVVRTFHITRTGQSVERIVKQFHFVAWPDFGVPADPAAILGFIRKVNNWRLVSPGGPAIIHCSAGVGRTGTYITIDSQIRSMKSKSELQIYKNVSLLRQQRCLMVQTEDQYVFIHMALLDYMESGETEVDANGLRDYIRKHMQTEHKTGMTGLMDEFIRLAKTDK-KDRFSEANKMVNQAKNRFKNVYPYDDTRVKLSQRPGVEGSDYINANYIDSYGCKDSFIATQAPLESTIGDFWRMIWEQNCGTIVMLSKEFEGQQSKVHPYWPQKGSPKIEHFIVETT---NGPTTYGDYIVREMKLTNTEAGSSRMVKQFQYTTWPDSGSPESGVGIIDLIGQVQKWNSSH-HNGIITVHCSAGVGRTGVFIALTNLIERVKTEGVVDVYQTVKKMRQQRTAMVQTRDQYEFCYRALQEYLESFDVYA 3026
Y NV AYD +RV L ++G +DYINANY+DGY YIATQGPLPET DFWRM WE S IVM+TR+EEK RIKC YWP+ G+ I +T+ D+ E VRTF + + G S +R V+QF F AWPD GVP P L F+R+V GP ++HCSAGVGRTG +I ID+ + +K + + +Y +V+L+R QR MVQTEDQY FIH ALL+ + G TEV A L YI+K Q E +TG+ EF RLA + RF AN N+ KNR N+ PY+ TRV L GVEGSDYINA++ID Y + ++IATQ PL T DFWRM+WE N +VML+K E + K H YWP + S + ++F+V+ N P YI+RE K+T+ G SR V+QFQ+T WP+ G P+SG G ID IGQV K +G I+VHCSAGVGRTGVFI L+ ++ER++ EGVVD++QTVK +R QR AMVQT D+Y+FCY+A EYL SFD YA
Sbjct: 1422 YANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRCQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGTETYGFIQVTLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPD-AGPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGCGNTEVPARSLYAYIQKLAQVEPGEHVTGMELEFKRLANSKAHTSRFISANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQKAYIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGREKCHQYWPAERSARYQYFVVDPMAEYNMP----QYILREFKVTDARDGQSRTVRQFQFTDWPEQGVPKSGEGFIDFIGQVHKTKEQFGQDGPISVHCSAGVGRTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALEYLGSFDHYA 1947 HSP 2 Score: 217.624 bits (553), Expect = 2.347e-57 Identity = 111/239 (46.44%), Postives = 142/239 (59.41%), Query Frame = 3
Query: 2283 ANKMVNQAKNRFKNVYPYDDTRVKLSQRPGVEGSDYINANYIDSYGCKDSFIATQAPLESTIGDFWRMIWEQNCGTIVMLSKEFEGQQSKVHPYWPQKGSPKIEHFIVETTNGPTTYGDYIVREMKLTNTEAGSSRMVKQFQYTTWPDSGSPESGVGIIDLIGQVQKWNSSHHNGIITVHCSAGVGRTGVFIALTNLIERVKTEGVVDVYQTVKKMRQQRTAMVQTRDQYEFCYRALQE 2999
+N VN+ KNR+ NV YD +RV L G+ GSDYINANY+D Y C++++IATQ PL T GDFWRM+WEQ TIVM+++ E + K YWP +G+ + FI T + VR L + R V+QFQ+T WPD G PE + + +V+ N G I VHCSAGVGRTG FI + ++ER+K E VDVY V MR QR MVQT DQY F + AL E
Sbjct: 1411 SNLEVNKPKNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGYRCQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTRLEEKSRIKCDQYWPNRGT-ETYGFIQVTLLDTIELATFCVRTFSLHKNGSSEKREVRQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDA-GPIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLE 1647 The following BLAST results are available for this feature:
BLAST of TCONS_00052951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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