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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052945 ID=TCONS_00052945|Name=TCONS_00052945|organism=Clytia hemisphaerica|type=transcript|length=829bpRun BLAST on NCBI transcript from alignment at scaffold_222:51702..75409- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052945 ID=TCONS_00052945|Name=TCONS_00052945|organism=Clytia hemisphaerica|type=transcript|length=23708bp|location=Sequence derived from alignment at scaffold_222:51702..75409- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052945 vs. Swiss-Prot (Human)
Match: NOTC1 (Neurogenic locus notch homolog protein 1 OS=Homo sapiens GN=NOTCH1 PE=1 SV=4) HSP 1 Score: 125.946 bits (315), Expect = 1.602e-31 Identity = 107/285 (37.54%), Postives = 141/285 (49.47%), Query Frame = 3
Query: 3 QINLA-CNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLC-NVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKIS--ACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSAS--ACDANPCKNGATCTPDGTALGYSCACVGGYSGS 824
+INL C +PC SG GY C C G++G C C+GNPC G TC + NGF+C C G +P C + + C + NPC++G C S GY C C+ G+SG C I+ C NPC NGG+C K + G+ C C ++G CQ +I PC N G+C GY+C C YTG TCE + C +PC NG +C S ++C CP G+ G TC C +PC++GA+C T GY C C GYSG
Sbjct: 639 EINLDDCASSPCDSGTCLDK----IDGYECACEPGYTGSMCNINIDECAGNPCHNGGTC--EDGINGFTCRCPEGYHDPTCLSEVNECNS----NPCVHGA-CRDS---LNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTC--KDMTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCI--DDVAGYKCNCLL-PYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQTCEVDINECVLSPCRHGASCQ--NTHGGYRCHCQAGYSGR 902 HSP 2 Score: 117.472 bits (293), Expect = 1.237e-28 Identity = 104/281 (37.01%), Postives = 136/281 (48.40%), Query Frame = 3
Query: 9 NLACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQ-QPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEAS--ACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSASA--CDANPCKNGATCTPDGTALGYSCACVGGYSGS 824
N C NPC +GG C + +GY CTC GFSG C + C+ NPC TC+ D + G+ C C + C V +PC NGG+C S Y +SC C G+ G C+ I+ C +PC++G SC + + G+ C C A Y+G C+ I + PC NGGSC T C G+ G CE C +PC NGA C S YTCTCP GFSG C + C + C NG TC DG ++C C G++GS
Sbjct: 754 NNECESNPCVNGGTCKD---MTSGYVCTCREGFSGPNCQTNINECASNPCLNQGTCIDDVA--GYKCNCLLPYTGATCEVV---LAPCAPSPCRNGGECRQSED-YESFSCVCPTGWQGQTCEVDINECVLSPCRHGASC--QNTHGGYRCHCQAGYSGRNCETDIDDCRPNPCHNGGSCTDGINTAFCDCL---PGFRGTFCEEDINECASDPCRNGANCTDCVDS--YTCTCPAGFSGIHCENNTPDCTESSCFNGGTCV-DGIN-SFTCLCPPGFTGS 1016 HSP 3 Score: 108.612 bits (270), Expect = 8.969e-26 Identity = 101/286 (35.31%), Postives = 128/286 (44.76%), Query Frame = 3
Query: 15 ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTES--SCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGC----GTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQ-QPCKNGGSCAVAPGT-PGYQCTCANNGYTGPTCE--ASACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSASA----CDANPCKNGATCTPDGTALGYSCACVGGYSG 821
C+ +PCQ+G C+ GY+C C G+ G C+E C +PC G TC+ N + C+C G C + D C VS C N G C GYSC C GF G C+ ++ C NPC G+ F C C A +TG C+ I + +PCKNGG+CAVA T G+ C C G+ G TCE A C C NG C SP TC C F+GP C A NPC N TC P + Y C C ++G
Sbjct: 1148 ECSPSPCQNGATCTD---YLGGYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCL--DLPNTYKCSCPRGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCV---DQVGGYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRRCESVINGCKGKPCKNGGTCAVASNTARGFICKCPA-GFEGATCENDARTCGSLRCLNGGTCISGPRSP--TCLCLGPFTGPECQFPASSPCLGGNPCYNQGTCEPTSESPFYRCLCPAKFNG 1422 HSP 4 Score: 105.145 bits (261), Expect = 1.426e-24 Identity = 105/312 (33.65%), Postives = 139/312 (44.55%), Query Frame = 3
Query: 15 ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV---------------ADGCGTVS-------------------GENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKISA--CSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTC--EASACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSG 821
C +PC G C + C CPTGF+G C C+ PC G+ C+ N ++C C G + C V DG T + PC +GG C + Y C C G +GP C+I+ C+ +PC + G+C K G+ECAC YTG++C +I PC NGG+C G G+ C C GY PTC E + C+ NPC +GA C S GY C C G+SG C + C++NPC NG TC D T+ GY C C G+SG
Sbjct: 493 ECASSPCLHNGRCLDK---INEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCL--DGPNTYTCVCTEGYTGTHCEVDIDECDPDPCHYGSCKDGVATFTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDN---AYLCFCLKGTTGPNCEINLDDCASSPC-DSGTCLDKID--GYECACEPGYTGSMCNINIDECAGNPCHNGGTC--EDGINGFTCRCP-EGYHDPTCLSEVNECNSNPCVHGA-CRDSLN--GYKCDCDPGWSGTNCDINNNECESNPCVNGGTCK-DMTS-GYVCTCREGFSG 785 HSP 5 Score: 104.76 bits (260), Expect = 1.577e-24 Identity = 98/281 (34.88%), Postives = 133/281 (47.33%), Query Frame = 3
Query: 30 PCQSGGICSPSSLV-AAGYTCTCPTGFSGQTC---TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNP--CQNGGSCTAKPSSPGFECACVAPYTGAICQESI--CSLQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEASACDV--NPCANGAQCNPSAASPGYTCTCPVGFSGPTCSASACD----ANPCKNGATCTPDGTALGYSCACVGGYSGS 824
PC++ G C A Y C+C GFSG C +++C NPC G TC + + C C G S C AD C + NPC NGG C A Y C C F GP C+ ++ C + P C++GG+C + S + C C A +TG C+ CS PC+NGG+C G ++C C G+TG CE + D N C NG C + Y C CP ++G C+ + N C+NG TC T GY+C CV G++G
Sbjct: 67 PCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTC-DLLTLTEYKCRCPPGWSGKSCQQADPCAS----NPCANGGQCL---PFEASYICHCPPSFHGPTCRQDVNECGQKPGLCRHGGTCHNEVGS--YRCVCRATHTGPNCERPYVPCS-PSPCQNGGTCRPT-GDVTHECACL-PGFTGQNCEENIDDCPGNNCKNGGACVDGVNT--YNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTC--HNTHGGYNCVCVNGWTGE 330 HSP 6 Score: 104.375 bits (259), Expect = 2.248e-24 Identity = 96/296 (32.43%), Postives = 128/296 (43.24%), Query Frame = 3
Query: 15 ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTE--SSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNVADGCGTVSGENP-------CLNGGDC-SLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEASACDVNP----------CANGAQCNPSAASPGYTCTCPVGFSGPTCS--ASACDANPCKNGATCTPDGTALGYSCACVGGYSGST 827
C+ PC GG C Y CTCP G++G C C +PC G C + + C C +G + C+V V+ + C +GG C NT + C+C G++G C+ + CS +PCQNG +CT G+ C CVA Y G C E I L PC+NGG+C P T Y+C+C G G CE + D NP C N C GY+CTCP GF G C + C +NPC T + C C G++G
Sbjct: 1024 ECDSQPCLHGGTCQDG---CGSYRCTCPQGYTGPNCQNLVHWCDSSPCKNGGKCW--QTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCVDAGNT----HHCRCQAGYTGSYCEDLVDECSPSPCQNGATCTDYLG--GYSCKCVAGYHGVNCSEEIDECLSHPCQNGGTCLDLPNT--YKCSCP-RGTQGVHCEINVDDCNPPVDPVSRSPKCFNNGTCVDQVG--GYSCTCPPGFVGERCEGDVNECLSNPCDARGTQNCVQRVNDFHCECRAGHTGRR 1303 HSP 7 Score: 103.219 bits (256), Expect = 5.280e-24 Identity = 92/281 (32.74%), Postives = 133/281 (47.33%), Query Frame = 3
Query: 15 ACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCT--ESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMC--KISACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQ-QPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCE--ASACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSGST 827
C+ PC+ GG C Y C C G +G C C+ +PC +G TC+ +G+ C C G + +CN+ D C NPC NGG C G++C+C G+ P C +++ C+ NPC +G + S G++C C ++G C + + PC NGG+C T GY CTC G++GP C+ + C NPC N C A GY C C + ++G TC + C +PC+NG C +SC C G+ G T
Sbjct: 606 ECSSQPCRHGGTCQDRD---NAYLCFCLKGTTGPNCEINLDDCASSPCDSG-TCL--DKIDGYECACEPGYTGSMCNINIDECAG----NPCHNGGTCEDG---INGFTCRCPEGYHDPTCLSEVNECNSNPCVHGA---CRDSLNGYKCDCDPGWSGTNCDINNNECESNPCVNGGTCKDM--TSGYVCTC-REGFSGPNCQTNINECASNPCLNQGTCIDDVA--GYKCNCLLPYTGATCEVVLAPCAPSPCRNGGECRQSEDYESFSCVCPTGWQGQT 865 HSP 8 Score: 102.834 bits (255), Expect = 8.309e-24 Identity = 103/321 (32.09%), Postives = 143/321 (44.55%), Query Frame = 3
Query: 6 INLACNINPCQSGGICSPSSLVAAGYTCTCPTGFSGQTCTESS-CSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCK--ISACSKNPCQNGGSCTAKPS-SPGFECACVAPYTGAICQESI----------------------------------------CSLQ-QPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEASACD--VNPCANGAQCNPSAASPGYTCTCPVGFSGPTCSA-SACDANPCKNGATCTPDGTALGYSCACVGGYSG 821
++ AC NPC++GG C +L Y C CP G+SG++C ++ C+ NPCA G C+P ++ + C C P C + CG G C +GG C + Y C C +GP C+ CS +PCQNGG+C +P+ ECAC+ +TG C+E+I C L C+NGG+C G GY C C NG+TG C + D C +GA C+ AS + C CP G +G C AC +NPC G+ C + C C GY+G
Sbjct: 102 LDNACLTNPCRNGGTCDLLTLTE--YKCRCPPGWSGKSCQQADPCASNPCANGGQCLPFEAS--YICHCPPSFHGPTCRQDVNECGQKPGL--CRHGGTC---HNEVGSYRCVCRATHTGPNCERPYVPCSPSPCQNGGTC--RPTGDVTHECACLPGFTGQNCEENIDDCPGNNCKNGGACVDGVNTYNCRCPPEWTGQYCTEDVDECQLMPNACQNGGTCHNTHG--GYNCVCV-NGWTGEDCSENIDDCASAACFHGATCHDRVAS--FYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTG 406 HSP 9 Score: 102.064 bits (253), Expect = 1.205e-23 Identity = 98/295 (33.22%), Postives = 128/295 (43.39%), Query Frame = 3
Query: 72 AAGYTCTCPTGFSGQTC-TESSCSGNPCATGSTCVPDASANGFSCTCAAGQSNPLCNV-ADGCGTVSGENPCLNGGDCSLSNTLYAGYSCQCNGGFSGPMCKISA--CSKNPCQNGGSCTAK------------------------PSSP------------GFECACVAPYTGAICQESICS-LQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTCEA--SACDVNPCANGAQCNPSAASPGYTCTCPVGFSGPTCS--ASACDANPCKNGATCTPDGTALGYSCACVGGYSG 821
A + C CP G +G C +C NPC GS C + CTC +G + P C+ D C G NPC + G C NTL + CQC G++GP C+I C NPCQN +C + SSP F+C C +TG +CQ + PCKNG C P T Y C C GYTG CE CD +PC G+ C A+ +TC C G++G C + C + PC++G TC A Y C C+ G +G
Sbjct: 354 VASFYCECPHGRTGLLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGYTGPACSQDVDECSL--GANPCEHAGKCI--NTL-GSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQYDVDECASTPCKNGAKCLDGPNT--YTCVCT-EGYTGTHCEVDIDECDPDPCHYGS-CKDGVAT--FTCLCRPGYTGHHCETNINECSSQPCRHGGTCQDRDNA--YLCFCLKGTTG 635 HSP 10 Score: 87.4261 bits (215), Expect = 7.355e-19 Identity = 81/239 (33.89%), Postives = 113/239 (47.28%), Query Frame = 3
Query: 141 GNPCATGSTCVPDASANG-FSCTCAAGQSNPLCNVADGCGTVSGENPCLNGGDCSLSNTL-YAGYSCQCNGGFSGPMCKI---SACSKNPCQNGGSCTAKPSSPGFECACVAPYTGAICQESICSLQQPCKNGGSCAVAPGTPGYQCTCANNGYTGPTC--EASACDVNP--CANGAQCNPSAASPGYTCTCPVGFSGPTCSA--SACDANPCKNGATCTPDGTALGYSCACVGGYSGS 824
G C G C +ANG +C C P C + C + PC N G C + + A Y+C C GFSGP+C +AC NPC+NGG+C + ++C C ++G CQ++ PC NGG C P Y C C + + GPTC + + C P C +G C+ S Y C C +GP C C +PC+NG TC P G + + CAC+ G++G
Sbjct: 28 GETCLNGGKC---EAANGTEACVCGGAFVGPRCQDPNPCLST----PCKNAGTCHVVDRRGVADYACSCALGFSGPLCLTPLDNACLTNPCRNGGTCDLLTLTE-YKCRCPPGWSGKSCQQADPCASNPCANGGQC--LPFEASYICHCPPS-FHGPTCRQDVNECGQKPGLCRHGGTCHNEVGS--YRCVCRATHTGPNCERPYVPCSPSPCQNGGTCRPTGD-VTHECACLPGFTGQ 252 The following BLAST results are available for this feature:
BLAST of TCONS_00052945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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