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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052930 ID=TCONS_00052930|Name=TCONS_00052930|organism=Clytia hemisphaerica|type=transcript|length=1623bp
GGCAAAAGTGTCTCCATGTACGAGATTGCACGAAAACTTATGCATCAAAC
AGATCAACTTTATTACATTACATTTGATCCATTTTCATTGGTGGATTTAA
AGTTCCAAGAGGGGTTCAATAACTTATGTGACGAGGAAAAACTTGACAAG
TCCAAGATCAAAGCTTTCAGTATCGGTGATGCACTAGAAGGATCAACAAT
CGATATTTCGGATGTTTACAATATGATGTATCCACCGCGTATCAATCTTT
GTCGAGTATTGGAATATCTTTATTCGGATAAAACAAAACGTGTCGGATTT
ATGATCGACGAGTTCCCTGGTGATTTTCTCACAGACAAATACGCTGAAAA
CCTCAAGGAAAGCCTCGTAAAGAATTTCCAGGATACAACTGTCATTCTTG
CGCTCCAAAGtgtagaaaaaaaacgaaaagttGTCAAATCAGGATTTTTC
AGTGACGATGTCAAGCAAGTTGAGAGATGCGACTACCATCAAACCGGTAT
GAAAGTCTTCACTCTGAACAAAACAATGCGAATGGCGGTAAATATTCACC
AgatgattgaaatttttcaggAAGAAATCGAAAAGGAAATCGTAGACGTA
CCGTTGGAATACAAAACACTAATTCTACGCAGACCGTACGCACCCTCCGC
CCGAAAAACAAGAAAAGCTTCCAAAGATGTCCCTCTTAAGCCTCAAGAAC
AGAAAGAACAAAAGCAACCGAGACCAACGGATGACGTCAGTCTCCACGAT
AACCCGAATCATCCTTCAACTCAAAGCGTGCGAAGGAAAACCAACATTGC
CTCATTctacgatccagaaaaattgtTAACAGACATAAACACTCAATCAG
GCTCTGTTTCCAAGAAACTTTCAACTTCATTCTCTTATGTTCGTGGTCAA
AGTGGTCATCAAATCAAAAGTGATTCTAAACCCAACCTTATATATTTAAA
CGACTTTAGATTCGACTTCAATAACTTTAATTCGTCTGATGCAGCTTATT
TGAGTGCAATTTTAAGAAGGCTGATGAAAAAGGATGTTCAGTTAACCGTC
ATATGTAGTACACTTGAAGAACTAGCTAttttgaaatatgtttttcaaCA
TAATTTAGAGGTATCAGAAATAACGACCTTTGCACCGTCTTTAACAGGAA
AATATCCAACCAAAGCAGAGAAATGGGAGGCTTTAAAAACGGGAAAAGTA
TTACTCACATGTTATAGAGGTTTCAGAGGCTGCGAAATGGACCATTGTAT
TTTATTTGCTAGCCCTGAAGATAACGTTCCAAAGAATTTGTACATTGAGA
TGCTCACTCGAGCTATCAATTTCGTGGATATAATCGTTCTTCCCGTAAAT
AAATCAAGCAGAGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCA
AGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAGTACAAACATTA
TTTTCTCGTCTTTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACC
TGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTC
GTTATTCAATCACTCCCACATCGACGCAGCAGTAAAACATTTCGGATACG
AACTTCGAGACACAGCACGTCAG Run BLAST on NCBI transcript from alignment at scaffold_222:515664..518934+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052930 ID=TCONS_00052930|Name=TCONS_00052930|organism=Clytia hemisphaerica|type=transcript|length=3271bp|location=Sequence derived from alignment at scaffold_222:515664..518934+ (Clytia hemisphaerica)
GGCAAAAGTGTCTCCATGTACGAGATTGCACGAAAACTTATGCATCAAAC
AGATCAACTTTATTACATTACATTTGATCCATTTTCATTGGTGGATTTAA
AGTTCCAAGAGGGGTTCAATAACTTATGTGACGAGGAAAAACTTGACAAG
TCCAAGATCAAAGCTTTCAGTATCGGTGATGCACTAGAAGGATCAACAAT
CGATATTTCGGATGTTTACAATATGATGTATCCACCGCGTATCAATCTTT
GTCGAGTATTGGAATATCTTTATTCGGATAAAACAAAACGTGTCGGATTT
ATGATCGACGAGTTCCCTGGTGATTTTCTCACAGACAAATACGCTGAAAA
CCTCAAGGAAAGCCTCGTAAAGAATTTCCAGGATACAACTGTCATTCTTG
CGCTCCAAAGtgtagaaaaaaaacgaaaagttGTCAAATCAGGATTTTTC
AGTGGTAAGtcatttttgaactttgcgTAGACCACAAAAATGTCttatgt
tttcttcttttttactcATATTTAATTTTGTAGTTTGAAGAAATTGCGAT
AGATCCTAAGCTAACAGAGTAAAGCTGTAGGCCATGTCTCGTATCCTTTG
ATATGTTAAATGGAAGAGACTATTTTGCGAGACTATTGCATATACTACTT
TGCTTTTTGAAGCAAGCGAACCATTCACTTCACCATGCAATATTTTGCAT
AAAAACggttattcaatttttatcgAATTCCTTTTGTAGACGATGTCAAG
CAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTCTTCACTCT
GAACAAAACAATGCGAATGGCGGTAAATATTCACCAgatgattgaaattt
ttcaggAAGAAATCGAAAAGGAAATCGTAGACGTACCGTTGGAATACAAA
ACACTAATTCTACGCAGACCGTACGCACCCTCCGCCCGAAAAACAAGAAA
AGCTTCCAAAGATGTCCCTCTTAAGCCTCAAGAACAGAAAGAACAAAAGC
AACCGAGACCAACGGATGACGTCAGTCTCCACGATAACCCGAATCATCCT
TCAACTCAAAGCGTGCGAAGGAAAACCAACATTGCCTCATTctacgatcc
agaaaaattgtTAACAGACATAAACACTCAATCAGGCTCTGTTTCCAAGA
AACTTTCAACTTCATTCTCTTATGTTCGTGGTCAAAGTGGTCATCAAATC
AAAAGTGATTCTAAACCCAACCTTATATATTTAAACGACTTTAGATTCGA
CTTCAATAACTTTAATTCGTCTGATGCAGCTTATTTGAGTGCAATTTTAA
GAAGGCTGATGAAAAAGGATGTTCAGTTAACCGTCATATGTAGTACACTT
GAAGAACTAGCTAttttgaaatatgtttttcaaCATAATTTAGAGGTATC
AGAAATAACGACCTTTGCACCGTCTTTAACAGGAAAATATCCAACCAAAG
CAGAGAAATGGGAGGCTTTAAAAACGGGAAAAGTATTACTCACATGTTAT
AGAGGTTTCAGAGGCTGCGAAATGGACCATTGTATTTTATTTGCTAGCCC
TGAAGATAACGTTCCAAAGAATTTGTACATTGAGATGCTCACTCGAGCTA
TCAATTTCGTGGATATAATCGTTCTTCCCGTAAATAAATCAAGCAGAGTA
TCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGTCTCGTTTC
TCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTCGTCTTTGG
AAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAATGTT
GAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTC
CCACATCGACGCAGCAGTAAAGTAAGTAGAACTTATTGTATATCGGTACT
TTACATGCAATATTCATAGCAACCTTTGTTACTTTTTACAACGTAAGTGT
TTCATCTTAGtataggtcgtgttcagacctaaaagtttaagtttaaggtt
taaatagtactttgttgatatgggaattcaattataatcacttttctttt
gtcatcatcgattggcgatctcNTTCTAAAAGAATCGAAGATACAGAGCA
CATATTCTCATTGTAACCTTCATCCGATAACATCCCTGTACATAACTAGT
CTTGTGATACCAACCGaagcagattttgaaaatgctttggttttaaagaa
aattattctttcttattttttcagNGaagcagattttgaaaatgctttgg
ttttaaagaaaattattctttcttattttttcaggaaTCTGCAACAATTC
AGGACTAGGTATATTTCCAATGAAATAACTTTTAAACTGTCTTAAGGGCC
ATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAATTTAAATCCTAC
CTCCAGTTTTTGAAGATTTCAGTTACCCGTtcaaagctttttagataaca
CAAAGGCTCCTTTACCTTTTGTTTGGCGGGAAGAGTGtcgtcattttttt
ctataGCACAGAAACTAAACCTTACCTGTCTTCATGAAAAAGACTGTTTA
GATGTCGGTAAGTTTTGGACGTACTGTATGGAGGGAGCCTTTTACACTCC
GGGACTGAATTTTGATCGCAGCGCCCCCTTATTGAAGAGAACGTGCTGGC
ATTTTCGGATTGGGTTCGCATTGTAAATGGTGATGTATATGCATGTAGGC
GGTGGATAAATTAGCAAATAGGTTCTTTAATACCAGAATTACGCAAGCCT
AACTGTGCCATGGCTGGTTGTGCATCCTCGCCAATTGTCCCAAAATTAGA
GAAGAAAAGAGGTAAGCGTAATCTTGAGCAAACTTTTACCTGTCTCAAAG
CCATTTCTGTCGAGGGTAAAGGGAGGCAACACCCTttctcacagccccac
tgggaaacctccccactggaaaaaatgtccaaaattttgtccccactgaa
aatagaTCAGACAAGCCAATCCTAACCGCAaattattgtgctattttttc
caactgaattttcttGTTCAAATAGAATGGGATTCAAATCCCTGGTCATG
AGGAAaataggaatatcaatccccattgagttttggtCCGCTTTTTTTac
tcccactggctgaaaaaatctcaccgggtctgtgagaagggtgtgtGAGG
CAGGAAAAAAAGATTCAAACAGTAGGAAAAGACTATTGCTTTCTGCTTGG
TTGAATTCCCTTTCCATCCTTCCTTGTCTTGTAGACATTTCGGATACGAA
CTTCGAGACACAGCACGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052930-exon-scaffold_222-1491911889:515664..516117 | TCONS_00052930-exon-scaffold_222-1491911889:515664..516117 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1510915933:515664..516117 | TCONS_00052930-exon-scaffold_222-1510915933:515664..516117 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1575043694:515664..516117 | TCONS_00052930-exon-scaffold_222-1575043694:515664..516117 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1491911889:516403..517534 | TCONS_00052930-exon-scaffold_222-1491911889:516403..517534 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1510915933:516403..517534 | TCONS_00052930-exon-scaffold_222-1510915933:516403..517534 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1575043694:516403..517534 | TCONS_00052930-exon-scaffold_222-1575043694:516403..517534 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1491911889:518898..518934 | TCONS_00052930-exon-scaffold_222-1491911889:518898..518934 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1510915933:518898..518934 | TCONS_00052930-exon-scaffold_222-1510915933:518898..518934 | Clytia hemisphaerica | exon |
| TCONS_00052930-exon-scaffold_222-1575043694:518898..518934 | TCONS_00052930-exon-scaffold_222-1575043694:518898..518934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:515664..518934 + |
Blast
The following BLAST results are available for this feature:
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