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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052924 ID=TCONS_00052924|Name=TCONS_00052924|organism=Clytia hemisphaerica|type=transcript|length=3961bpRun BLAST on NCBI protein sequence of TCONS_00052924-protein >TCONS_00052924-protein ID=TCONS_00052924-protein|Name=TCONS_00052924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp MNESESSSTTENSPLINKINQPGRKTSKSLPKEISRKYLKKSNNDRNNANRun BLAST on NCBI transcript from alignment at scaffold_222:374153..389106+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052924 ID=TCONS_00052924|Name=TCONS_00052924|organism=Clytia hemisphaerica|type=transcript|length=14954bp|location=Sequence derived from alignment at scaffold_222:374153..389106+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_222:374153..389106+ >TCONS_00052924 ID=TCONS_00052924|Name=TCONS_00052924|organism=Clytia hemisphaerica|type=CDS|length=23772bp|location=Sequence derived from alignment at scaffold_222:374153..389106+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052924 vs. Swiss-Prot (Human)
Match: S38A9 (Sodium-coupled neutral amino acid transporter 9 OS=Homo sapiens GN=SLC38A9 PE=1 SV=2) HSP 1 Score: 320.857 bits (821), Expect = 1.134e-95 Identity = 213/540 (39.44%), Postives = 322/540 (59.63%), Query Frame = 3
Query: 369 NRSPYMINSDQILNRSASTEDLRD--VAQYKRYRYYSKLHGSMSEPLVIPAHVLP---RSFFFFKGDSG----------AKQSSIITIFAIWNTMMGTSLLSMPWALQQSGFXXXXXXXXXXXXXXXYTCLIILKSEKTLGL--KTSVEFVDVCQHYLGAPAKYVAFTFGVVAFLGAIIVYWVLMSNFLYKVGKFTHD--HTVITPDNIPKAHFNYSTIYHNARVVGEKRFPEVICHKHSNMNQTSPDITPSADNSFYNYWDQRKTXXXXXXXXXXXXXXXXXXTFFTKFNALGTVSVLYILVFVIVRAVQWGPHLHFNVPLAEGPTKLY----NFGFPALTGILALALYIHNAILSILATNEKPENNTRDVTVAYILTTGTYAFVAVLFYSFFP---LDKSCIEQVFLDNFVSSDIMTFVAQCGLLFQMTTVFPLLMYIVRIQILGFFLNRSDYSYLSIIIHNIVLISAGVLMAIFYPNVGHIIRYVGSVSGMVYIFTLPSLVKMVIQYKDQSLKPTSXXXXXXXXXXXXXNFIAQFLV 1910
++ P+ I I+N + + + D A KR YYS+L + L+ P HV+P + + S K +S++TIF IWNTMMGTS+LS+PW ++Q+GF G+ ++ +M + LY C ++KS + TS E+ DVC+HY G+ ++ + F +V+ +GA+IVYWVLMSNFL+ GKF + H + D I + + I +A G +I + + Q F +WD+ +TVP YL+ +LLPL + KSP+FF+KFN LGTVSVLY++ V +AV+ G HL F+ + PT+ + F FP LTG+L LA +IHN I+++L N+K ENN RD+ +AY+L T TY ++ VL ++ FP L K CIEQ FLDNF SSD ++F+A+ LLFQM TV+PLL Y+ R+Q+LG S ++I N++++ AGV+MA FYPN+G IIRY G+ G+ ++F PSL+ ++ ++++ L ++ H +I LG+AN I QF +
Sbjct: 36 SKRPFCIEPTNIVNVNHVIQRVSDHASAMNKRIHYYSRLTTPADKALIAPDHVVPAPEECYVYSPLGSAYKLQSYTEGYGKNTSLVTIFMIWNTMMGTSILSIPWGIKQAGFTTGMCVIILMGLLTLYCCYRVVKSRTMMFSLDTTSWEYPDVCRHYFGSFGQWSSLLFSLVSLIGAMIVYWVLMSNFLFNTGKFIFNFIHHINDTDTILSTNNSNPVICPSAGSGGHPDNSSMIFYANDTGAQ-----------QFEKWWDKSRTVPFYLVGLLLPLLNFKSPSFFSKFNILGTVSVLYLIFLVTFKAVRLGFHLEFHWFI---PTEFFVPEIRFQFPQLTGVLTLAFFIHNCIITLLKNNKKQENNVRDLCIAYMLVTLTYLYIGVLVFASFPSPPLSKDCIEQNFLDNFPSSDTLSFIARIFLLFQMMTVYPLLGYLARVQLLGHIFGDIYPSIFHVLILNLIIVGAGVIMACFYPNIGGIIRYSGAACGLAFVFIYPSLIYIISLHQEERLTWPKLIFHVFIIILGVANLIVQFFM 561 The following BLAST results are available for this feature:
BLAST of TCONS_00052924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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