|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052918 ID=TCONS_00052918|Name=TCONS_00052918|organism=Clytia hemisphaerica|type=transcript|length=757bp
TCATGAGTTTCTTCATGCTATTGGATTTTATCATGAACAAAGTCGGCCTG
ATCGTGACCAATACGTTAATATCATCACCAGAAATATCGTTGGAGgTCGT
GAGCACAATTTCAAGATTGCATCGAGGATCAACAGTCTTGGTGTTGAATA
CGATCGAGTTTCTGTTATGCATTACTCAAAACGAGCTTTTAGCAATGGTA
ATGGAAACACAATCGAATGGAAAGCTAACCCTAAGTTATCACTTGGTGGA
AATAAATTGTCTGAGAAAGATATAATgcaaatcaatttgaaatactGTAG
TGACGTCAAACCTACCACTACAACTACAACAGCCACTACTAAAAAACCAA
CGACTACGAAAAAACCAACGACTACCACAAAAACTACAAAAACCACAAGA
ACTAAAAAAACAACGAAGCGCCCGAAAACTACAAAGTCCACCAAAATGAC
GACAACGACACAACGGCCTGGAAAAGCATGTGGTGACCGATTGGGAGCTT
GCATTGCCGTTCAGTTCAACAAAGGCTTATGCCGTTCGTATAACTATAAA
TACTACTGCCCCCGATCGTGTGGGTCCTGCAAAGGTCCTAAATCTGAAAA
ATGTATGAATTTGAAAGATACAAAATATGATTGTCAATCAAGAGCTAAAC
GCGGAGAATGTCAATCTCAACGCAGGAGATATGGATCTGTTCGCTGGAGA
ATGAAGACTCAATGTCCACGTGTCTGCTGCGATCGTGGAGAACTCTACAA
ACGTCCT Run BLAST on NCBI transcript from alignment at scaffold_222:354400..357986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052918 ID=TCONS_00052918|Name=TCONS_00052918|organism=Clytia hemisphaerica|type=transcript|length=3587bp|location=Sequence derived from alignment at scaffold_222:354400..357986+ (Clytia hemisphaerica)
TCATGAGTTTCTTCATGCTATTGGATTTTATCATGAACAAAGTCGGCCTG
ATCGTGACCAATACGTTAATATCATCACCAGAAATATCGTTGGAGGTAAA
GATTTGATTTCCGCAATACTGGTGTTATTATCCTAATATAACCTCTCTGA
TTtccgggacaagctggagtttttacaagctctcgtttgatttggttggt
cgttaacctgtaataaaacaattttgttactttttctaaagaacgcatca
tttctattacttcaaataaccaattagtgaagtctcttgtaaaaactcca
gcccatCCCTGATTTCCATCACACCCTAATATAAATTGTATCTGAAAATA
ATGTGGCCAGTCGATataattttgcgcccctcttatCTACGCTACTGATA
ATTCTCAAATTATATAAACGTCgcgttgaaaaataaaaatcctgTAATCC
AAATTATTAAATTTAACACCTCGCTATGAACTTCTACTTCATTCATTTGc
tatatttttatcttttaggTCGTGAGCACAATTTCAAGATTGCATCGAGG
ATCAACAGTCTTGGTGTTGAATACGATCGAGTTTCTGTTATGCATTACTC
AAAGTAAGATATTGCCAACATTGGTTCTTACGTAACCTTGAAAAGGtctg
tttccaaaaaaaaatggCAGTCCGCTAATTCTGAAACATtatcgagttta
tgtattcgagaacAACCGGAGGCAACAtcgagccgtacatcaactattgA
CTTTGTTTTGTGTCGATTTCACTTACCTTCGCCCTCGATAACATAAACTC
CCCTtgtaaaaattcttgataagatctgaaaagatcgttgaagatctttc
aagatctttaacaagtaagaatctttaaaaaatctttgtaagatcttaca
acgATTCTTAggcaatcttgaaaatttcttccaacaaaaagatctttaaa
gatcttgtaAAGAAATCGTTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGTTAAGAATCTTAAAAGCACGTAAATT
TCTGGTTatgattgtttttcataagaaggaGTCTTTAGACTCAAGGAGAG
CAATCTCTTAGGATAGTATTTACGAAACAGTTTTTGGTCAGCTTCGAAAT
ACGGTAAgtggtttttttcttttgtgtgtGTGTTATCATTGACTGTACTA
ATGAAATAGTTAATTAATGACGAGATCATCAGTTGAATGCTGTCACTCGA
GCGAAGCTTTCGGCCCTTATTCAATAACTGAACGGGGATAGTAGTAAAAT
TCCgtcagcgaccgtagtgcagtggtagagcatccgtctACAgtgtgcaa
ggttgtgggttcaacccccggCCGGGTCACACCAAAGATTcctaaaatgg
tacttgatgcctctctgcttgatgctcagcaagtAGGTGGAGCAatccct
cccctaccttcaggtagatagctatcgaaagtgGAGCCTGCAGGTCATCT
ccgacttacttttacttaaAATTCCGTCAAGATCTTGAATCACTGTAAGG
GACAAGAATCTTATTCAAAACTTATAAAAGAGTCTTATCAGATCgttaaa
gatcttgaaagatcttgGCACGTTCgtagtaagaaactgaaaaagaagaa
gcaaagtttcttgataagatcttttcaagaacttttcaagaatttttacc
agggtCGCCATTGCTTTAAAAGAGAAGACAGATTTTCTTAAGTGATTCCT
GGATGGTCAGATTAACTAAGGTTGATTAAAGTCTTTTANAAGAGAAGACA
GATTTTCTTAAGTGATTCCTGGATGGTCAGATTAACTAAGGTTGATCAGA
GTCTTTTGGAACATCTTTTTTCTACGAACTTTCGATGGACTCACAAATCA
TTAATCAAACAAAACTTTTTCTTCTTCCAGACGAGCTTTTAGCAATGGTA
ATGGAAACACAATCGAATGGAAAGCTAACCCTAAGTTATCACTTGGTGGA
AATAAATTGTCTGAGAAAGATATAATgcaaatcaatttgaaatactGTAG
TGACGTCAAACCTACCACTACAACTACAACAGCCACTACTAAAAAACCAA
CGACTACGAAAAAACCAACGACTACCACAAAAACTACAAAAACCACAAGA
ACTAAAAAAACAACGAAGCGCCCGAAAACTACAAAGTCCACCAAAATGAC
GACAACGACACAACGGCCTGGAAAAGGttggaaaatcaaatatctttcCT
AATTTTCATACAAAGATAGTACAAATTTTAAGAATAGTTTATAGAATAGA
CGCTAAAAAAGGTAGATTTTTTCGCCTCTAGTGTCAGACCTGGTGTAGAG
TAAAAAACCGCTAAAATGGAAAAAAGCAATTACTCTCgtgtacctaatag
ccgggggatttgaataagcagggggttggaaaaatggTGGGTTGGAATTa
gaaatgtcctgggtggaaaacttttttaaaggaGGCTAATACTGCNtctg
taaacatctccgccactgcttactccacccgaatttatcacgcctctcct
aaactattcccttttttagtgatcttgtgtagacgataggatcgtctaca
gGGTTACCAAATTAATCCTGCCTCCGAAACTATTCCCTATTTTAGTGATA
GTCTACCTCGGGAGTTACTTTGGTATAAAATGGGTTTTGACAAGTATATG
CGAGCTTTAAGGACAGTAAGGATCCCTTTTTAAACCCTCAAAAGTCTATT
AAAGGGGTGCAAGAACCATCACGAATAAGCAATTGAAAGGGAACGGAAAT
ATCAAGATCAACTCCCTCAAAGGATAATANGAGAGTATCCTGTAGGATAT
CTTTCTTGGAAAACTTTggcaattttgaaataagattTTGTAATGCAATC
CAATCTAAGGTCACTTTTTCCATAAATCATGATacaaatctcataaaaaa
gtctCACGTAGATCAAATCATGACATTGCAATAAACTTGTCTTTGATACT
TTTCAGCATGTGGTGACCGATTGGGAGCTTGCATTGCCGTTCAGTTCAAC
AAAGGCTTATGCCGTTCGTATAACTATAAATACTACTGCCCCCGATCGTG
TGGGTCCTGCAAAGGTCCTAAATCTGAAAAATGTATGAATTTGAAAGATA
CAAAATATGATTGTCAATCAAGAGCTAAACGCGGAGAATGTCAATCTCAA
CGCAGGAGATATGGATCTGTTCGCTGGAGAATGAAGACTCAATGTCCACG
TGTCTGCTGCGATCGTGGAGAACTCTACAAACGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052918-exon-scaffold_222-1491911889:354400..354494 | TCONS_00052918-exon-scaffold_222-1491911889:354400..354494 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1510915933:354400..354494 | TCONS_00052918-exon-scaffold_222-1510915933:354400..354494 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1575043694:354400..354494 | TCONS_00052918-exon-scaffold_222-1575043694:354400..354494 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1491911889:354918..355002 | TCONS_00052918-exon-scaffold_222-1491911889:354918..355002 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1510915933:354918..355002 | TCONS_00052918-exon-scaffold_222-1510915933:354918..355002 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1575043694:354918..355002 | TCONS_00052918-exon-scaffold_222-1575043694:354918..355002 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1491911889:356630..356925 | TCONS_00052918-exon-scaffold_222-1491911889:356630..356925 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1510915933:356630..356925 | TCONS_00052918-exon-scaffold_222-1510915933:356630..356925 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1575043694:356630..356925 | TCONS_00052918-exon-scaffold_222-1575043694:356630..356925 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1491911889:357706..357986 | TCONS_00052918-exon-scaffold_222-1491911889:357706..357986 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1510915933:357706..357986 | TCONS_00052918-exon-scaffold_222-1510915933:357706..357986 | Clytia hemisphaerica | exon |
| TCONS_00052918-exon-scaffold_222-1575043694:357706..357986 | TCONS_00052918-exon-scaffold_222-1575043694:357706..357986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:354400..357986 + |
Blast
BLAST of TCONS_00052918 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 1.720e-21 Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2
Query: 2 HEFLHAIGFYHEQSRPDRDQYVNIITRNIVGGREHNFKIASR--INSLGVEYDRVSVMHYSKRAFSNGNGNTIEWKANPKLSLGGNKL--SEKDIMQINLKY 295
HEFLHA+GF+HEQSR DRD YV I+ I+ GREHNF S +SL V YD SVMHYSK AF NG TI + + + G ++ S+ D++++N Y
Sbjct: 152 HEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLY 253
The following BLAST results are available for this feature:
|
