TCONS_00052914 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052914
Unique NameTCONS_00052914
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length375

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052914 ID=TCONS_00052914|Name=TCONS_00052914|organism=Clytia hemisphaerica|type=transcript|length=375bp
CGCTATCTTACAATCGCTTCTTAGGATTGTAAGCTAATTAGCGAAATCGG
CGCGTcattcttttgatatattttttggtAAAGTGAAAAATTGTATAAAG
ATtcttttaagaagattttttgaacaatATTATCTTTGTGAAGAAGTTTT
ATAGTTTCCATTTTATTCAAATATGATGAAGATTTTTGTATTTCTTTGTA
TGATTGTGTTCATACGCAGTCATCCTTTGAACCATCCAGGGGAAGAGAAT
CCAGCATTTGATTACATCAATGATGCTAATAAAGatctcgataaagaaaa
ttttgaagaaggtGATATGGTAAAAGTGCAAAATGCTGCTTTGAAAAAAG
ACTGGGGTCAATGGCCAAACGGCAT
Run BLAST on NCBI

transcript from alignment at scaffold_222:352593..353210+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052914 ID=TCONS_00052914|Name=TCONS_00052914|organism=Clytia hemisphaerica|type=transcript|length=618bp|location=Sequence derived from alignment at scaffold_222:352593..353210+ (Clytia hemisphaerica)
CGCTATCTTACAATCGCTTCTTAGGATTGTAAGCTAATTAGCGAAATCGG
CGCGTcattcttttgatatattttttggtAAAGTGAAAAATTGTATAAAG
ATtcttttaagaagattttttgaacaatATTATCTTTGTGAAGAAGTTTT
ATAGTTTCCATTTTATTCAAATATGATGAAGATTTTTGTATTTCTTTGTA
TGATTGTGTTCATACGCAGTCATCCTTTGAACCATCCAGGGGAAGAGAAT
CCAGCATTTGATTACATCAATGATGCTAATAAAGGTTGGTATACACTTCC
CTTCATTATTCGAACATTCAATTCGAGAATTTCTTTCTATGCTGTACCAA
ATAAAATCCGTTTTTTGAATGCTGtgaagaaaaagttaaaaagcatAACT
GTTCTAGTCATAATTATCAATGAATTCAAAAGTTGAACTTCTTGTGGGTA
GCTGTATTTTTTTGGTAGTGTGTATTGACTAATTAAgtctattttgaatt
ttaaatgatggaattttttccatttagatctcgataaagaaaattttgaa
gaaggtGATATGGTAAAAGTGCAAAATGCTGCTTTGAAAAAAGACTGGGG
TCAATGGCCAAACGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033432XLOC_033432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052914-exon-scaffold_222-1491911889:352593..352876TCONS_00052914-exon-scaffold_222-1491911889:352593..352876Clytia hemisphaericaexon
TCONS_00052914-exon-scaffold_222-1510915933:352593..352876TCONS_00052914-exon-scaffold_222-1510915933:352593..352876Clytia hemisphaericaexon
TCONS_00052914-exon-scaffold_222-1575043694:352593..352876TCONS_00052914-exon-scaffold_222-1575043694:352593..352876Clytia hemisphaericaexon
TCONS_00052914-exon-scaffold_222-1491911889:353120..353210TCONS_00052914-exon-scaffold_222-1491911889:353120..353210Clytia hemisphaericaexon
TCONS_00052914-exon-scaffold_222-1510915933:353120..353210TCONS_00052914-exon-scaffold_222-1510915933:353120..353210Clytia hemisphaericaexon
TCONS_00052914-exon-scaffold_222-1575043694:353120..353210TCONS_00052914-exon-scaffold_222-1575043694:353120..353210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:352593..353210 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.274773	0.372218	0	0	0	0	4.27673	0.48334	0.823796	43.4356	0	0	0	1.49808	0	0	0	0.44557	1.23309	0.691313	0.510134	0	0	1.4658
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052914 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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