TCONS_00052912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052912
Unique NameTCONS_00052912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2346

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052912 ID=TCONS_00052912|Name=TCONS_00052912|organism=Clytia hemisphaerica|type=transcript|length=2346bp
gaaaatttgaaaatctaatTTTGGAAGATTTGCTGGTAATGATGACGAAA
CAAACTATTTTGCTATGTTTAATTTTGATGATCTGTTTGATGCTATGTGC
AGctcAACCAACGCCACCGGCTACATCCAGTGAAGGACGATTATTGAAAT
TCATTTTCCAAGATTACAATCCGAACGCAAGACCAGTGGTTCGACCAACT
GATAGTGTCAGTCTGAAGTATGACATCGCCCTCAAACAGATCTTGGAAAT
TGATGAAAAATTGCAAGTTGTTACCTTTAATTTCTGGGTCAGACAATATT
GGACGGACCCTTTACTAAGATGGAATCCCTCGGATTGGAACGGAACAGCT
TACGTCGCAGTCAGCCCAGATACCATTTGGAAGCCAGATATTACCCTCTA
TAATAATGCTGAGCGTGAATTTCAGGGCTTTGATGCGTTTGGGAAAACTC
GTGTTACAATTTATAGTGATGGCTCTTGTGTCTGGCTTCTTCCAATTATC
TTaagGAGTCAATGTAAAATGAACCTGCTCTACTTCCCatttgatgaaca
atattgTCCACTGGTATTTGGTTCATGGGCGTATGATGGTGGCGCCCTCA
ATTTAACAAATCGCAGCCCTGAAGGTGATTTGTCATCTTTCAGTGAGAGT
GGAGAATTCAATATAGGacCTATGAAAGCGGTCAAGCATACCACACTTTA
TGGTTGCTGTCCAAACCCATACTACACTATCGAATACACTGTACACATGA
TTCGACGTGCAAAATTTTATCTCTTTAATCTTGTGATACCTGGTGTACTG
ATTGCACTGCTAACCatcttttccttctttttaCCTCCCTTATGTGGTGA
ACGAACTGGACTCATCATCACCAATTTCTTATCACTTTCCGTGTATATTT
TGATGGTTTCAGATAATGTGCCGCCAAGTTCCAATATACCTCTGCTTGTT
GAATTCTACACTATCCTGATCTCAGAGATCGGTATCGCTCTCATCCTAAA
TTGCATGATCATTCCACTAGCAGCACGCAACACTCCCATGCCTTACATCA
TCAAGAAAATATTCCTCCAAAAACTTGCTTACGTCACCTTATGCCGCCGC
CCTGATGACGTCAGGATAGATAAAATACAGAACGAAAACAATGAAGATAA
ACTATTCAATAATGGTTACTTGAATAGCACATTTAATGAGAATATCATCT
TTGCAAACAACAAACATGTTGTTACCAGTAATGGCAAAATAATGACAGGC
GACCATAAACAAAATGGTAACCATGGCTACCATAACCTGATGAATAACGC
TGCTCCTATGTTACGCGAACGGCGTGTGATTAAAGTTGCCTCGGCGGACG
AACCACTGTATGAAATGTCAGATAAGCTTTCAGCGATACATGACATCATG
AAAGATGACGTTtcggaaaagaaaaacagttcAGATTGGGAACAGCTGAC
ATTGGTCTTGGATCGTTTTTTCTTCGCCATCTTCTTTGTCACCATTTTTG
TGAGTGTTGGAGCTATTCTAGGGAAAGCACCTAAAATCACAATGTAAAAA
TGATGGTTGGAATTCAATGTGGAGGGATGGCCAAGTGATCAAAGGTGTCA
GCGTTACGAACAAGGGATTTCTTCGTTCGAATCTTCGCTCCTTCAAATGT
TTCGTTCAGTTTATAGATAGCTAAACCGCCTTGGCCTtcatgaaaacaat
cgaaagactttCTAGATATCCTGGATTAAACTGGTCTATctacgtaaaat
atcgactctatctatctaaTGTTTGTGGGCTTGGAGTATTTTTCTAACTG
TATTTAAGTATCGGTCGAAACCACTCTACAAAATTTTTCACATCTTGTTT
TTAATAAACTGGTCAATGACATAAAAAGAGACATTAATTATGTTTATTTT
CAAACCTGGAGTCTAGATACCTTATGGTCATAATGGAATCAAAAGTGATT
ACTTAAATTACTGGACACAGATTCCACGGTCATTATTtagcggaaaaaga
ccagaAGTCCGGCTAAATGAGCTTTAAAGTCAACGCAAGCTGTTTTCCGT
GCCTCTGGAAAAACACTTTTCAATCATAAGCTGGTTTTCCTGAAAAGGGC
AGTGGAAACATCCTGGAAAATTGATTGGTCATTATCTTAAACGATAACAA
AACCTTATTATCTGATTGGCTCAAATGCCCCTCAAATGAATGTAACAAAG
TTTAGTGGTGGCAATAATCAACCCATGACAGTTAGATATgtcttaacctt
tccagcgcgctgttttttatattttcacgctgtctgcgcgcaactttttt
tgagaaaacgcgGGGTTTGGGAAATTTgccataactcaagaactag
Run BLAST on NCBI

transcript from alignment at scaffold_222:309674..318567+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052912 ID=TCONS_00052912|Name=TCONS_00052912|organism=Clytia hemisphaerica|type=transcript|length=8894bp|location=Sequence derived from alignment at scaffold_222:309674..318567+ (Clytia hemisphaerica)
gaaaatttgaaaatctaatTTTGGAAGATTTGCTGGTAATGATGACGAAA
CAAACTATTTTGCTATGTTTAATTTTGATGATCTGTTTGATGCTATGTGC
AGGTATCAAAAATTCCATTTCTCCCTTTAGTGATATTAAGATAAAAGATT
ATATCGTAGACTTATGTTAAGGCTTTACCTGAACTGAAGTCCATTCCctt
taacctgagatcagattgtgaatgttttctatGCAcgccacgctgaagct
ctaaagagacgggatgagctggagtttttacaagatacttcactaattgg
tcatttaaagtgatagagatgacgcgttctttcgaaaaagtaataagatt
cttttattacatcttaacgaccaaccaaatcaaataagagcttataaaaa
ctccagcttgtcccaaagaGACGGGTGGAAATATAACAATATGACGAATA
TGCTATCTCAAAATCGTTAGGACCGGGCTCTAAAaggtctaaaaggactg
ggaataacaacaaagttgcgtgattttgtttatgaatagggTGCCGTATC
AGAAAAATTTATCTTTTATCCTTTTAGAGTACCATATCAAACTTTATGGA
CTGCTGATTATTTTGGAAATAGACTTTAATATTAACGGGAAAAGATGCCC
ATGGAATTCGTCGGTCTAAACTATagagctttttttctttttcagctcAA
CCAACGCCACCGGCTACATCCAGTGAAGGACGATTATTGAAATTCATTTT
CCAAGATTACAATCCGAACGCAAGACCAGTGGTTCGACCAACTGATAGTG
TCAGTCTGAAGTATGACATCGCCCTCAAACAGATCTTGGAAATTGTAAGT
TCAGGGTACTATTTCAATATttgaattttcctaaaaatcatTCCGAGTTT
AGTAATACTTCAACCCCTAATCCACTTGTATTGCAAAACTTCGAGGgctc
tttttacgtgtttttatattttttgttaagTAAATTTTGACTCATAAGTA
GGGAGAAAATTATTTGGTAAATCTGAGTAATTTAGAACATTTGTTTGGAT
GTGCATACATTTGACACTCTACTgatattcgattttcaaaggggAATTCG
ATTTCTCaacgaataagggagcgtatcaacTAGTAAAACTTTGTTTCTGA
GAGTTTATCATTGACTACGACTTTCAGAGTAATCGAATAATGTAGCGTAT
CgaacagtgccgtagcaactgggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCTCGgaccaaaccatggttggccctcgcagtg
tcactaaacttcagccccccccccaatataaaaatgcttcctacggcact
gtcgAATGGAGAGTTTATTGGTGacgaacatttttgaaattatcgaataa
tggagcgtatcgaatagtagaacgtcgaattagagagcgtcactTGTATA
ACCTTTTTAAGTCTCGTGTCCTTATATTTTTGCCTTAGAACGAAAGGGAA
CAAGTGATTACTACAAATGTTTGGATTCGACATGTAAGTCCGCATATGCA
CATACACGACCACACTATGTACAAAGCTTTTTAATTAGCACttgcacttt
cgttttctttaaCCACTTAGGATGAAAAATTGCAAGTTGTTACCTTTAAT
TTCTGGGTCAGACAAGTAAGTTTATATGTAGTGGttcttgtttttttctc
ttcagatgttttagccaaattatcTTGTCATAAATACCCTTTCACTTGTA
ATTCAGAATGAATTTTGTTTCCataatatcaaaatttatttgcaTGCACT
CAGAAAAGCGAACGTCAATATAATAAGCATTCCAACGACTTCCGGCATTT
GACGTCCGAGTCGCAAGGTTCTGAAAACGTTTTCCAAATCGACGACATGA
GATTAACCTGCAATCGTGGTCAAAACTGGACAAACAGTTCGCTGTCCAGA
ATTGATCGTAGTCAAAACTGTTGGTCTGAGGACCCTTTTCCACCCCCCTC
CCTATCCCCCAAAAATCAATGTTgaagttgaatttttgcacgTTCACAAG
ACTCACCATCAACATTGGTATTGGGGGAGGGGGTGGAAAAACAGTTCTGT
CCAGGATTGTATCTCTCATTTCATATATGTTTTTACTATTCCTTTCCAGT
ATTGGACGGACCCTTTACTAAGATGGAATCCCTCGGATTGGAACGGAACA
GCTTACGTCGCAGTCAGCCCAGATACCATTTGGAAGCCAGATATTACCCT
CTATAATAAGTAAGACTTTCCTTTGCAATTTTTGATCGTGTCTGCCGTTA
GCACTGAGTAATCAAAGattaaatgtcatgtaacaagcacataaaaattt
cgagttaaaGCGTAAAATTTggcttcagactttaattttgcaacctgtgt
attgccTTAAACTTTTGtggtaaaactttttttttcaatcaaagtaAGTC
AAAGTTCAATTCAATCCACcgtttttcgatatttttatacTTCAATGTTA
TTATGATTTTCTGAATTAACAAGCGGACTTTTCTCTCATTTTTAGTGCTG
AGCGTGAATTTCAGGGCTTTGATGCGTTTGGGAAAACTCGTGTTACAATT
TATAGTGATGGCTCTTGTGTCTGGCTTCTTCCAATTATCTTaaggtaaaa
aaattattagttttgaattttaaaggtcttcccgtttcatatctgacaca
tatttcaaattaggacagtgtctgcctattgttattattatgcTGATACA
AGCAAGAAAATGTAATGGtagtaatttttaattttgtgattttttaatgt
tgtaaattgaaattcgttttgaattttttttactatacttgtgatcatgg
tgcaaagaagacaccgaaacgtcaaataatgaataaaattaaatttttag
ttttcactttttttatcaagaaaatgtttattctttctctttctgaccaa
tcttgctccgtGTCAatacaatatcaaaaagcttgtataaattaaaattg
ttgagtaagcaaatgatatcaaccttatttaaaaacaaaaccttttctGT
CTAATTTTATTCCGAGGAAATGTGAACcattgcttgttttttattgagAA
AAAGATTCTACCTCCGTGTTCCTTTCGATATGATTTGGGAAAAAACATTA
Cactatacgttttttttataagaacatccagaatttttgaagccttccga
tgttcttaactttttctgttttaggactaaaaatgttcttattttcaccg
ttttctgagtatttttgtccatttaccTAAGAATGTGTTTTAGattccgc
gaagccttaaaatgttcttaacttgttcttagtattttggccatcgaagc
cttatatagttggttctcataaaaaaaacgtgcaggGGTAGAGAAAGTTA
CTAATTAAAGGCTCCAACccaaatttattgatttttccttttctttgaaT
AGGAGTCAATGTAAAATGAACCTGCTCTACTTCCCatttgatgaacaata
ttgTCCACTGGTATTTGGTTCATGGGCGTATGATGGTGGCGCCCTCAATT
TAACAAATCGCAGCCCTGAAGGTGATTTGTCATCTTTCAGTGAGAGTGGA
GAATTCAATATAGGacgtaagaaaatttttcagcACTTATTTCTCACTTA
TCAAATAAAGGTGTTGAttccagggatatgttatagcggagctggatgaa
ggacgagaattccttagcgggttgcttctttgtcttttctattgtaaact
gttgataatagaaatccatctctgtctccttgagtgttctgtttttataa
gaaaaatgaagcagacaaagtattcgtgcagtacgtttgcacatattttg
ctatgatgttcccgctttccatcaaaataatatttgtagaagatacccca
aaagcttccttgtaaatgaaatctatttttatcagcgtgtgttatgaatt
tgagaagctttcatgatttctctttaaaaatttcggatgtaaatattttg
acaaatattgtttcaattgacttgaaattttttccataatcagaccgact
tgctatctgaaaatatcagttagaaagtgaggcatcctgcggtgtagcgc
ggtatttcaaatgaaaaagtactatttataatcttgcagaagaaatttct
tataactttcatttttttaaattgtccttcaccaatgttttacagaccat
cttgataattaaaagtttttaatcgtggacgataaatgcagcagcagaat
cactggctaagaggaaatccaaatttcacgagtttgtaattaaaaaagtt
aaatttcatatcaaattttgatgtcagggacagagatagaacaaggcttt
tttaaatgtgcgttatccagctccgctataacatatccctgttgATTCTC
ACCAATACAAACTCGAACGGAAAAACTAATTTAATCGAAATACAGAGATA
TTCGAATAAGTATCACATTCTCAGCCCacagggggggggcactcggtTTC
TAAACGACGGTTTGTGCCACCAAAAAAACATGACCTTCGAAATTGGACCC
TCACAGTGCAGctcttgagcagtgaaaagatACACTTACAGGGCATTTTA
CCGAGAGTTTCTTGCCCTTACCGTGTAGTTGATtgcatatcttattttgc
tgaagccacctgaaaatgagTCTGAGGTGTTGATACAttgtgcaaaacaa
atcaaaatgggtgcgagtcaaaactataaagatacatcagatttttatTG
AAGTGTCGAAGATATTCTGTTGTATCTAAAGAAAATGGTTATTTAGACgc
caatgaaaaatattaataaaagaTGTAACACACAATCTTTATTCTTCATT
TCAGCTATGAAAGCGGTCAAGCATACCACACTTTATGGTTGCTGTCCAAA
CCCATACTACACTATCGAATACACTGTACACATGATTCGACGTGCAAAAT
TTTATCTCTTTAATCTTGTGATACCTGGTGTACTGATTGCACTGCTAACC
atcttttccttctttttaCCTCCCTTATGTGGTGAACGAACTGGACTCAT
CATCACCAATTTCTTATCACTTTCCGTGTATATTTTGATGGTTTCAGATA
ATGTGCCGCCAAGTTCCAATATACCTCTGCTTGTTGAGTAAGTATTAGCc
agtacctcaccaaaaaccgagATTTTTCATTCCGTGTAGAAAAAGCCAAA
ACGTCTAGTACCTTGTCGGGGAAAACTTCGGAAAAGtgatagtctagcaa
gctagacgactaatttatacatagtagaaataaagcaaaaagtaatgaat
ggaacaattttagttgtctagaaacctttgtgcaataactccaaacaaaa
gaaaagtgtcaatattgcaattataattttttcctgctcaaaataattct
tgagaaaaaagaatatgtgtggatttgtgtattgaaagtttttcatttga
gttgatttcgttttgagagtttgttgttgcttgatcaattgttttctcgc
tacgcaagtttctgcgtagctagcccctgtatctataaggccggaacacc
ggattcttccagtcgtttataaaaactaaatcccgtattattattattat
tagtattggtattattagtattacacgcattataaacgactccagtctag
aaaagtgacgaaattttggccaagtgacaaatatttttcgccgacgaaaa
ttttccccggccttaatgcgtttaccaactagcAGCAAAGgacaaatatt
tttccccgacgaaaattttcaagGTAAGGTATAGGCTAAGTTATTATCAA
AATGTGTATCCAATGCAATGTCTGACCACGCTCTAAGgatattcttagtt
tttgggAACCCTCTTTGCTTTCACtattataaaataaagaaagttCATTT
AGGCTGCCCTCTTATTTTGAGCCTATTGAAATTTTATGGAGATCTCTGAA
ATATTGTGGACAGAGACCTTACTCCGAATAAACAGAACAGCATTATATCA
GTGAAGATAGAGAGTTCTATCACCATCCTGCCTGTAGGTGATTTGACATT
CGAACACGAACTATTGCAGCctaaagggctacttagactacacaatatat
tgtcgagcaatattcaacaatatggtttgcggaccgtaatgtacgaagta
aacaaagGGTAtcctattataaaaaggaattttctttctgtagacaatcc
ccctatattgttggaatattgcaaatggAGCTGACAAAATATTGCAGACA
CCATTTCAATGTGTTGCCagcattcagcaatatatcgcCACTATATTACC
TGACAATATATTGNNtgttggaaataagatgagacgagattcattgtttc
tgacattggtgtaagaaaatatttggactaaaaaagggcctgtaaacttt
gcaatccttcatcaaatgacaagatttttcgatcaacattttcttcaagg
tgaaccttattgcttaatactttcctccaaaattctccagcgactttttg
tctacaaattgggtctgaaattgtgtgtgcttataaagaactttttattt
tctggctagagaaaatatcttttcaaaacaaaatttaatggatgccaaaa
ttgaacgcaaatttatttcgtggagctaacttttattttattctcgtata
ttagaaggctagaaatcttcgatgctgatagtaagaatgttcagaacatc
cttgagttctactaaaaagtcgtatttcgtcgggtgagcctagaatttct
tttaatttattacataaaagaaatcaaaagactttaacgaccaattaccg
acaaattcatctcctgtctttctttatacctctatgatattgtgtagtgt
atgtagcccttaaatTGTGCTCGAAGCCTTTAAATTACCAATCGGCAGAA
TATTAggaacccagctggcacacaacgttgtttcaacgttcatctaacgg
tATATGggcgttgtgaacgttagataaacgtcgaaaaaacgttgtgtccC
AGCTTTTGAGACTGAGGTGATCACGTTATCCAGTTCAATGTATACCAAAG
TTTCCGATCGTTctacattttgaattttgagctttactaagATCATAAGA
AAAtcagtaccttatcggccaaaacgtagtcggccttaattttagtcggc
cttaattattagtcggccctaattttagtcacctcgtcaaaatttagcca
ctaagggccgactaataattaagttttggccattcctaaatttttagtcg
gccctaattttagtcaccaagccaaaatttagtcacttagggccgactaa
gttttggccgataaggtgaTAGGAATAACTCTTGCTTGTTTCTGTTTTAG
ATTCTACACTATCCTGATCTCAGAGATCGGTATCGCTCTCATCCTAAATT
GCATGATCATTCCACTAGCAGCACGCAACACTCCCATGCCTTACATCATC
AAGAAAATATTCCTCCAAAAACTTGCTTACGTCACCTTATGCCGCCGCCC
TGATGACGTCAGGATAGATAAAATACAGAACGAAAACAATGAAGATAAAC
TATTCAATAATGGTTACTTGAATAGCACATTTAATGAGAATATCATCTTT
GCAAACAACAAACATGTTGTTACCAGTAATGGCAAAATAATGACAGGCGA
CCATAAACAAAATGGTAACCATGGCTACCATAACCTGATGAATAACGCTG
CTCCTATGTTACGCGAACGGCGTGTGATTAAAGTTGCCTCGGCGGACGAA
CCACTGTATGAAATGTCAGATAAGCTTTCAGCGATACATGACATCATGAA
AGATGACGTTtcggaaaagaaaaacagttcAGATTGGGAACAGCTGACAT
TGGTCTTGGATCGTTTTTTCTTCGCCATCTTCTTTGTCACCATTTTTGTG
AGTGTTGGAGCTATTCTAGGGAAAGCACCTAAAATCACAATGTAAAAATG
ATGGTTGGAATTCAATGTGGAGGGATGGCCAAGTGATCAAAGGTGTCAGC
GTTACGAACAAGGGATTTCTTCGTTCGAATCTTCGCTCCTTCAAATGTTT
CGTTCAGTTTATAGATAGCTAAACCGCCTTGGCCTtcatgaaaacaatcg
aaagactttCTAGATATCCTGGATTAAACTGGTCTATctacgtaaaatat
cgactctatctatctaaTGTTTGTGGGCTTGGAGTATTTTTCTAACTGTA
TTTAAGTATCGGTCGAAACCACTCTACAAAATTTTTCACATCTTGTTTTT
AATAAACTGGTCAATGACATAAAAAGAGACATTAATTATGTTTATTTTCA
AACCTGGAGTCTAGATACCTTATGGTCATAATGGAATCAAAAGTGATTAC
TTAAATTACTGGACACAGATTCCACGGTCATTATTtagcggaaaaagacc
agaAGTCCGGCTAAATGAGCTTTAAAGTCAACGCAAGCTGTTTTCCGTGC
CTCTGGAAAAACACTTTTCAATCATAAGCTGGTTTTCCTGAAAAGGGCAG
TGGAAACATCCTGGAAAATTGATTGGTCATTATCTTAAACGATAACAAAA
CCTTATTATCTGATTGGCTCAAATGCCCCTCAAATGAATGTAACAAAGTT
TAGTGGTGGCAATAATCAACCCATGACAGTTAGATATgtcttaacctttc
cagcgcgctgttttttatattttcacgctgtctgcgcgcaactttttttg
agaaaacgcgGGGTTTGGGAAATTTgccataactcaagaactag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033430XLOC_033430Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052912-exon-scaffold_222-1491911889:309674..309775TCONS_00052912-exon-scaffold_222-1491911889:309674..309775Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:309674..309775TCONS_00052912-exon-scaffold_222-1510915933:309674..309775Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:309674..309775TCONS_00052912-exon-scaffold_222-1575043694:309674..309775Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:310369..310517TCONS_00052912-exon-scaffold_222-1491911889:310369..310517Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:310369..310517TCONS_00052912-exon-scaffold_222-1510915933:310369..310517Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:310369..310517TCONS_00052912-exon-scaffold_222-1575043694:310369..310517Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:311444..311488TCONS_00052912-exon-scaffold_222-1491911889:311444..311488Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:311444..311488TCONS_00052912-exon-scaffold_222-1510915933:311444..311488Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:311444..311488TCONS_00052912-exon-scaffold_222-1575043694:311444..311488Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:311973..312082TCONS_00052912-exon-scaffold_222-1491911889:311973..312082Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:311973..312082TCONS_00052912-exon-scaffold_222-1510915933:311973..312082Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:311973..312082TCONS_00052912-exon-scaffold_222-1575043694:311973..312082Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:312369..312467TCONS_00052912-exon-scaffold_222-1491911889:312369..312467Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:312369..312467TCONS_00052912-exon-scaffold_222-1510915933:312369..312467Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:312369..312467TCONS_00052912-exon-scaffold_222-1575043694:312369..312467Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:313276..313439TCONS_00052912-exon-scaffold_222-1491911889:313276..313439Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:313276..313439TCONS_00052912-exon-scaffold_222-1510915933:313276..313439Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:313276..313439TCONS_00052912-exon-scaffold_222-1575043694:313276..313439Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:314678..314960TCONS_00052912-exon-scaffold_222-1491911889:314678..314960Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:314678..314960TCONS_00052912-exon-scaffold_222-1510915933:314678..314960Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:314678..314960TCONS_00052912-exon-scaffold_222-1575043694:314678..314960Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1491911889:317174..318567TCONS_00052912-exon-scaffold_222-1491911889:317174..318567Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1510915933:317174..318567TCONS_00052912-exon-scaffold_222-1510915933:317174..318567Clytia hemisphaericaexon
TCONS_00052912-exon-scaffold_222-1575043694:317174..318567TCONS_00052912-exon-scaffold_222-1575043694:317174..318567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_222supercontigscaffold_222:309674..318567 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166017	0.169987	0.375945	0.397416	1.5224	0.468825	3.19297e-07	1.00909	1.01567	0.32716	1.29175	1.22728	0.560092	0.554559	0	0	0.16227	0	0	0	0.551287	0	0	0	2.82963	3.70944	0.652754	0.269815	0.386957	0.319153
Blast
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BLAST of TCONS_00052912 vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 248.44 bits (633), Expect = 1.550e-72
Identity = 143/458 (31.22%), Postives = 239/458 (52.18%), Query Frame = 3 
Query:  120 ATSSEGRLLKFIFQDYNPNARPVVRPTDSVSLKYDIALKQILEIDEKLQVVTFNFWVRQYWTDPLLRWNPSDWNGTAYVAVSPDTIWKPDITLYNNAEREFQGFDAFGKTRVTIYSDGSCVWLLPIILRSQCKMNLLYFPFDEQYCPLVFGSWAYDGGALNLTNRSPEGDLSSFSESGEFNIGPMKAVKHTTLYGCCPNPYYTIEYTVHMIRRAKFYLFNLVIPGVLIALLTIFSFFLPPLCGERTGLIITNFLSLSVYILMVSDNVPPSS-NIPLLVEFYTILISEIGIALILNCMIIPLAARNTP----MPYIIKKIFLQKLAYVTLCRRPDDVRIDKIQNENNEDK---LFNNGYLN-STFNENIIFANNKHVVTSNGKIMTGDHKQNGNHGYHNLMNNAAPMLRERRVIKVASADEPLYEMSDKLSAIHDIMKDDVSEKKNSSDWEQLTLVLDR 1466
            A+ +E RL + +F+DYN   RPV   +D V + +++++ Q++++DE  Q++  N W++Q W D  L+WNPSD+ G  ++ V    IWKPDI LYNNA  +FQ  D   KT+  +   G   W+ P I +S CK+++ YFPFD Q C + FGSW+YD   ++L       +L  + ESGE+ I      KH   Y CC   Y  I Y++++ R   FY  NL+IP +LI+ LT+  F+LP  CGE+  L I+  LSL+V++L++++ +P +S  IPL+ E+    +  + +++++   ++ +  R TP    MP  +K +FL  L  V    RP         NE N  K   L+     N + F+        +     +G      H++     +   +  ++       V+ +++    + E    +  I + MK     K+   DW+ + +V+DR
Sbjct:   31 ASEAEHRLFERLFEDYNEIIRPVANVSDPVIIHFEVSMSQLVKVDEVNQIMETNLWLKQIWNDYKLKWNPSDYGGAEFMRVPAQKIWKPDIVLYNNAVGDFQVDD---KTKALLKYTGEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIGSSMNLKDYWESGEWAIIKAPGYKHDIKYNCCEEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHYR-TPTTHTMPSWVKTVFLNLLPRVMFMTRPT-------SNEGNAQKPRPLYGAELSNLNCFSRAESKGCKEGYPCQDGMCGYCHHRRIKISNFSANLTRSSSSESVDAVLSLSALSPEIKEAIQSVKYIAENMKAQNEAKEIQDDWKYVAMVIDR 477
The following BLAST results are available for this feature:
BLAST of TCONS_00052912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA31.550e-7231.22Neuronal acetylcholine receptor subunit alpha-3 OS... [more]
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