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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052908 ID=TCONS_00052908|Name=TCONS_00052908|organism=Clytia hemisphaerica|type=transcript|length=1542bp
TAACGTTCGTACTATCATAAAGATaaacaaattgaaattgaaaaattgaa
ttgaatttttctcCCGCCATCTTGCATCCATCAGTGCAGACCGCGCGGGA
AAATTATCAGAAAAATAGACTTGTTTGTAGAGCAAGATATGTTTTTGTGC
CCGAGATCCAAAATGTAACCTTGGTAATAACTTTGAGTAAGATCTCAATA
GAGGTGAAAGAAGCAGTTATTGAAACGGTGAAAATAGTGAAAAACAGAAG
CTGAAAAGGAAGAAACCTGGATGCTGGCAGCTGGTCAGCTGAAGAAACAT
CAAAGCAGAACGCTGACAGTCTGGTGGTTAATTGGAAAAGATAAGTCGCT
CATCTCTAGTTGTGCGaacaaatgaaatgaaatactTTCCTTCAAATAAA
AGAAGTTCAAGCTTCTGCATACATCGATACAAATGGTCAATAAATTTGGG
AAAGCCAAATGGCGAGATAAATACTACAAAGTCAAAGGTCGAAAGTAATG
AGAAGTTGTAAAAAAGACTTTATGAGATGGGGTATTCTTCCTGGATTCTG
TTTCTTCATATTCATGATTTGGATTATGTACTTTTTTCTTATGCCAGAGG
GCAATTATGTTCAAGGAATTTACTACTTCTTGGAAAACTCATCAAAACCA
GTTGTGATACCCGACCTAAAAACTACATTGAATACACATACGACATCATT
TTCGACCACCCCAACTACACCAACAACAATCTTTGCAGCCAAAAGTACAA
CCACTCCAACCATCACAAAGACGACTACTCCAACGACAACAACCACCACt
ccaactacaacaacgaccattCCGAGCACAACAACAACCACTCCAACCAC
GACAACCACCACTCCGACCACAACAACCACCACACCAACCACAACAACCA
CCACTCCCATCACAACAACCACCACTCCCTTCACAACAACCACCACACCA
ACCACAACAACCACCACTCCGACCACCACTCCgaccacaacaacaaccac
tccgaccacaacaacaaccactccaactacaacaaccaccactcccacca
caacaacaacaacaacgaccaccccaactaccacaacgaccactccaatc
acaacaacgaccaccccaacTACCACAACGACCACTCCAACCACAACGAC
TACCACTTCAACCACAACAACCACCACTCCAACCACAACAGCTGGAATAT
CGCCTACTTGTCAAAATTGGGTCAAGGGTGAGAGGCACTGGACAGCAGTC
CTCAACACTAAACTTCAGACTTTTATGTTCTATGATAGGAAAAAAGATAC
ATGTTATAGTTTGTGTTTGGGAGTTGTACAACAAGGATACATTGGATGTA
TTACTCGGCCACCTGAATGCTGGTGTTTTAAAACAACTTCATATATTGAT
TATTCTATGGGTAATACTATGGATGTTTGTTTCTTCTAATCATGTTAGAA
GGAGATGTCGAGATAGATTTTGCATTACATTTTCAATTATCTTCAATCTT
CAATCATTTTATACCGCCGCTTTGTAAAAGCTCTGAAAGAAG Run BLAST on NCBI transcript from alignment at scaffold_222:294414..300314+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052908 ID=TCONS_00052908|Name=TCONS_00052908|organism=Clytia hemisphaerica|type=transcript|length=5901bp|location=Sequence derived from alignment at scaffold_222:294414..300314+ (Clytia hemisphaerica)
TAACGTTCGTACTATCATAAAGATaaacaaattgaaattgaaaaattgaa
ttgaatttttctcCCGCCATCTTGCATCCATCAGTGCAGACCGCGCGGGA
AAATTATCAGAAAAATAGACTTGTTTGTAGAGCAAGATATGTTTTTGTGC
CCGAGATCCAAAATGTAACCTTGGTAATAACTTTGAGTAAGATCTCAATA
GAGGTGAAAGAAGCAGTTATTGAAACGGTGAAAATAGTGAAAAACAGAAG
CTGAAAAGGAAGAAACCTGGATGCTGGCAGCTGGTCAGCTGAAGAAACAT
CAAAGCAGAACGCTGACAGTCTGGTGGTTAATTGGAAAAGATAAGTCGCT
CATCTCTAGTTGTGCGaacaaatgaaatgaaatactTTCCTTCAAATAAA
AGAAGTTCAAGCTTCTGCATACATCGATACAAATGGTCAATAAATTTGGG
AAAGCCAAATGGCGAGATAAATACTACAAAGTCAAAGGTCGAAAGTAATG
AGAAGTTGTAAAAAAGACTTTATGAGATGGGGTATTCTTCCTGGATTCTG
TTTCTTCATATTCATGATTTGGATTATGTACTTTTTTCTTATGCCAGAGG
taaaacattttatttcatattttcactTCCTTGTAttcagacgatctcaa
tcgaacgaaatcgacgatcgaaccagtcgaaccaaatcgaacgcaatcga
ccaattgaaattcgattgtcgaacgcaatcgaatctcaatcgaacgtcaa
aattctgagtaatattcgattggttcgattgttgttcgacNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatca
tgcatattgtaataattatgcatggttttatcattgtttttctgctggac
tacataattattcaacagggtggcctctttgaaaaaaggtctattcgatT
GTCGTTCGACTGCGTTCGATTGCGGTTTAATCATCTTTCGACTGCGTTTG
ATTGCTCTATGCTCTAAAGAAGGCCGATTTTCCATCGTAAATCAAAGAAG
AGAAGAGTGTTTGATGCCCTCTGATGTCCTGGAAACATACAATCCACCAC
TTTCGTCATACTTTCTCGACCATATGGAAAGGATATATATGATTCGTCAC
GTGACCTTATTCGGCAATTTGTCCTTTGGTCCTTCCGCCCTTATGATAAC
TCTTGCTTTTCTTATCCCACCCTTACTAGCTTCGGACCAAATCCTTAGGT
CACGGTTCAAAACTTCATGTTTTCCCGTGCAAAAAAAAGAAGCGCTTCAA
TGTTAGCAAAGCAATGCCAATAAGAACGAGAACCATGACGCAACCACCAG
CACcgcgcaatcgaacgcaatcaaatctcaatcgaacgcaatcgaatatc
aattgaatctgaaaattgcggtaatattcgattgagatttgattgcattc
gacaatcgaatttcaatcagtcgattgcgttcgatttggttagactggtt
cgatcgtcggttccgtttgattgagatcgtctggttgtATAAAATGCCAA
CATATATACCTTGCTTTAGTCGTATGGGAGAGGgagacagtcttttgaat
aaatAATTACACCAGcagaaattttgttaaaataatAACGTCATAAATTG
ATCTGTCTTTTACAACACAACTGTTACCTAGGTAAGATAATTTATCCGCA
TTTGTACTAGAAGTGTAATTTATTATTCAATAGAAGTCTGCaaagtaccg
taagttggtctaatgtcgacatctcCCTTCTAAGCAGTTAGTGCATAGTG
GAAGTACTTCGATTTGTGAAGCGTCTTTAGTtacatagaacaaaagaaaa
gaacaaaagaataaaggaattacccatagtCACCATTTGGCAACCATGGG
GAATTGTCTCTACAATATAGAAATCCTGAAATAAGCGCCctgctcgaata
agcgcccccctttgAATAAGCACCCCCCTCCAGgaaggggcgcttattcg
aattgGTGGCCTAGGCTAATTTCCGGGATAAGAATTTCTCTTCGGATGAT
TAACAGTCGAAaaatttggaacaaaaataaaaatcaaggtcttttagctt
tcttttttttctgtttctttttcttcagattcatttttcacttttacaaa
gcaaatttttcttttattcatccttttgtgaaaaatcaaccctttgaaac
agttaagtttaagcagattccaaatttgttgatatacgaatttctgaaat
aaagaaataagcgcccgctcgaataagcgcctcGCTTGAATGAGCGCCGC
ccttagagcctgaaaaattaaataagcgctCGGGCGCTTATTCAAGGATT
TACGGTATGTACAAAAATTacctgttttctccttgaagCTTGAattatgt
ttcttttatattctgCAATTGCAATAATACCAAATAATACCAATGCATCA
NTTGAattatgtttcttttatattctgCAATTGCAATAATACCAAATAAT
ACCATGCATCGACACTTAACACTCTCCAACTTTTAACTGCACTGTTCAAA
agagataacataacccccatttttagtaaaaatttggagcttgtttccac
tgccaattatatccgGATGCACTTTAGTTACAAAGTTTGTGAAAAAACTT
CTGTTGGTTGTTTTGAATAAGTATCACCCTTGTGATCACAAATCTTCAGC
TGGACAGTTTGAAATTATGTCATGTTTTTTATGTCGTCACAAGCAAAACA
TTGAAAGAAAATATGGACATATTATACATCAATTAACGCGATTCTCGATA
ctgtaaagtaaaaaaaaaaaaaaagaactcaCTTGCTTTcgttttgaagc
aaaaaacagtgcggttttgattgttttggttgCGTAGCCAAGTTATTGTA
ACATTTGCCACATTCCTTTAGAGCAAAGCATGTTGCATGGATGTTCTGTT
ATGAGACCACTCTCCCACTATGTTATGAGACTCTCCCACTCAATACGACC
CTGGTCGCCAGCACTGTACAGTTATATCCAATGGATGGATTTGAGTGTCT
GTGGGATTTTGGGGCTAGGTTACTGAATTACtgatagacaaaatattttt
tttccctCTGACCTTTGATCAaataaataccttaagggaagaagtttaag
cggaaagaaaatttgaaatttcctgccaaatttaaattattgtaTTCATC
TACTCCCAAATGTGGGTTATTTCAGGCCTGAAAGAACaaggttttttctt
atttaataAGGTTCTTTTTGGCCAAAGATATCCTTCATCTGCTACAATTA
AATTCcagccaaatttaatttttcaagacaTCCACCAAATGAAATtcctt
cagaaaaaaattttttttaccatctaccaaattaaattctcgccaacATT
TCTTCTGTTAAGTTAGTATGCAGTATGCAGTGCCGTTGAGTCTCAACAAG
GACAAAATGcttgctgctctgccacccaatcTCCTAAAAAGAAGATAGTT
GGGCATGTGTTATATTCTTCATCAGTAATTCCGATCTTGGTATTATCACC
AGTTCTAATAAAGAAGGGTGTTAAAATTGGATGTGGCATGTCGACATATA
TGACTAACTTATGGTACAATCGATAACTTTttccaatagacgatatcggc
tttccgaattctccccgaatgattacccatgatgcattgcgcaaaaattt
cacggaaagtcaatatcgtccgtgaatttttttgcgcaatgcatcatggg
taatcattcggggagaattcggaaagccgatatagTCTATTGATGACCAA
TTGAAAAGCTTGCAACATTTTCTCTTCTCGAAAAAAGACATTTAATGTCA
TCAAACAAGAAATTTGCAAAAGCCGTGATTCAACAATGCCATAGCCTTAT
GATGAAGCAGCCGGCGAATTGATAACCAATTGATGAATCGGATATTTTAA
TCTATTAAACATTAGATAATCAGGATTTAAAGGGATTGATAGGCCTGATT
ACCTGGCCTATCAATTTATTATCGATTGGTTCCAAGATGATTGTTTGATC
AAAAATTGATAGGCAATTGATGAAAAATACCAATcgatatatacttttga
taatCAAAACAATCAATATCCAGTccatcgattcgtcatcgattagaaaa
agttattgattgtatcgAGTAGGGGAGTTTAGAAAACGGTGACCTTTCGA
AGGACACTATGTCACGTTGAATATGATTAAAAACTCTGTTGACTCTGCAA
AGAcaattactatatatatttATTAAAGTAAGCAACAAAACATATTTATG
GGTAAtgcatgaattttgaaaaattaagtgCGATGGGTTAGTTTTAGGTC
TGCTTTCGAGAGGCTCTTGAGGGCTTTAcacattgatttttcaaaagggA
TAATCATTTTTTCCTGTTTTATGTGAAGCATCTTAGAATTCTTTGGACTC
ACCCTAAAGTcttagttttatttttgattaaaaagaaCCAACTCGCATTC
GTTAAATGTAGGGCAATTATGTTCAAGGAATTTACTACTTCTTGGAAAAC
TCATCAAAACCAGTTGTGATACCCGACCTAAAAACTACATTGAATACACA
TACGACATCATTTTCGACCACCCCAACTACACCAACAACAATCTTTGCAG
CCAAAAGTACAACCACTCCAACCATCACAAAGACGACTACTCCAACGACA
ACAACCACCACtccaactacaacaacgaccattCCGAGCACAACAACAAC
CACTCCAACCACGACAACCACCACTCCGACCACAACAACCACCACACCAA
CCACAACAACCACCACTCCCATCACAACAACCACCACTCCCTTCACAACA
ACCACCACACCAACCACAACAACCACCACTCCGACCACCACTCCgaccac
aacaacaaccactccgaccacaacaacaaccactccaactacaacaacca
ccactcccaccacaacaacaacaacaacgaccaccccaactaccacaacg
accactccaatcacaacaacgaccaccccaacTACCACAACGACCACTCC
AACCACAACGACTACCACTTCAACCACAACAACCACCACTCCAACCACAA
CAGCTGGAATATCGCCTAGTAAGTAATAAGATTTCAATATTCTCAAGAGT
CTTACAAGTTAGATTTCTACGCTTATTTCTTCTATGTTGAAAGCTAAGCC
CTGATGTAAGTTTTAGTTTGTAAAATCatgatatttttattaatttaggt
tttttgccaaaaatgttgaaatttattCGATGCATAAATCAAGTGATGTT
TTTTAAATCATAAGAATTTTACTTCATAAAAGGATTTGCCTGTTTTCTTT
GGgacacttttttttaattctataaTTGCAATGGCTAgaattaacatttt
ttttcttccttctaGCTTGTCAAAATTGGGTCAAGGGTGAGAGGCACTGG
ACAGCAGTCCTCAACACTAAACTTCAGACTTTTATGTTCTATGATAGGAA
AAAAGATACATGTTATAGTTTGTGTTTGGGAGTTGTACAACAAGGATACA
TTGGATGTATTACTCGGCCACCTGAATGCTGGTGTTTTAAAACAACTTCA
TATATTGATTATTCTATGGGTAATACTATGGATGTTTGTTTCTTCTAATC
ATGTTAGAAGGAGATGTCGAGATAGATTTTGCATTACATTTTCAATTATC
TTCAATCTTCAATCATTTTATACCGCCGCTTTGTAAAAGCTCTGAAAGAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052908-exon-scaffold_222-1491911889:294414..295012 | TCONS_00052908-exon-scaffold_222-1491911889:294414..295012 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1510915933:294414..295012 | TCONS_00052908-exon-scaffold_222-1510915933:294414..295012 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1575043694:294414..295012 | TCONS_00052908-exon-scaffold_222-1575043694:294414..295012 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1491911889:299075..299681 | TCONS_00052908-exon-scaffold_222-1491911889:299075..299681 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1510915933:299075..299681 | TCONS_00052908-exon-scaffold_222-1510915933:299075..299681 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1575043694:299075..299681 | TCONS_00052908-exon-scaffold_222-1575043694:299075..299681 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1491911889:299979..300314 | TCONS_00052908-exon-scaffold_222-1491911889:299979..300314 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1510915933:299979..300314 | TCONS_00052908-exon-scaffold_222-1510915933:299979..300314 | Clytia hemisphaerica | exon |
| TCONS_00052908-exon-scaffold_222-1575043694:299979..300314 | TCONS_00052908-exon-scaffold_222-1575043694:299979..300314 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:294414..300314 + |
Blast
The following BLAST results are available for this feature:
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