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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052903 ID=TCONS_00052903|Name=TCONS_00052903|organism=Clytia hemisphaerica|type=transcript|length=822bp
gcttaaaactcaaaaagttaagaagacgaaggattcaaaaatttttggat
gtttttataaaaaaacgtgtacattaaaATTTGGGCTTTTCCATACAAAG
AGCATACAAAACCTACTCTCCCCAACATAACACACCCTGTACCACTACAC
ATTGTACTAAAAATGTGAAAAGAATACTAATTATGCAAGAtcttgaaaaa
atacaaaataatatATTGTAAATCTTATAATTATCTATTTTAAAGTAAAT
accttttttaataatttgacACGTCATTATTACGTCATTATAGTCTTTAA
CCAATCCCATTGTCATTATTCAATGCTAGACATCATTATTGAAATTTATT
AACCAATGAAAAATAAGCTGAGATCATTATTAGCCAATCACACTTCAGTT
TAAATACGGTATTAGCCAATCGCAATTCATTAAAACTATATTGTGAACGA
AACGAAAACGGATacctgtattacGTAATACTCGACCAATAGGATCTCAA
TTGATTGATGAACATCCAATCAGAACATTCGAGACTACCCTTACATCATA
ACCAGCCAATCAGCATTCAGGAATCTCATTAACGAACCAATCAAATCAAT
GGAAGTTAGCATAAACATCGAATGATTCGAGATATTCCTGAAGAGCTCGA
TAACAAAATTCGTACTGGTCCTAAAGagaaaagaatttgataaaaatgga
ATCTACCTTGATGGAATAAGAAGGACACAAAAATCATTGGAAAATTAACT
TCAgtagtactttaatgggataaattttcgcggggattaaatttcgcggt
tgagctcatccgcgaaatttta Run BLAST on NCBI transcript from alignment at scaffold_222:130339..131523+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052903 ID=TCONS_00052903|Name=TCONS_00052903|organism=Clytia hemisphaerica|type=transcript|length=1185bp|location=Sequence derived from alignment at scaffold_222:130339..131523+ (Clytia hemisphaerica)
gcttaaaactcaaaaagttaagaagacgaaggattcaaaaatttttggat
gtttttataaaaaaacgtgtacattaaaATTTGGGCTTTTCCATACAAAG
AGCATACAAAACCTACTCTCCCCAACATAACACACCCTGTACCACTACAC
ATTGTACTAAAAATGTGAAAAGAATACTAATTATGCAAGAtcttgaaaaa
atacaaaataatatATTGTAAATCTTATAATTATCTATTTTAAAGTAAAT
accttttttaataatttgacACGTCATTATTACGTCATTATAGTCTTTAA
CCAATCCCATTGTCATTATTCAATGCTAGACATCATTATTGAAATTTATT
AACCAATGAAAAATAAGCTGAGATCATTATTAGCCAATCACACTTCAGTT
TAAATACGGTATTAGCCAATCGCAATTCATTAAAACTATATTGTGAACGA
AACGAAAACGGATaattgtacagggtgtccctaattaaagtatcgagttt
gaacatgcgattgagtagaaaagtttgtgtgtgttatcgctaaaatataa
gaacgttctccatcacacagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagagggagagcttaaa
atacaattttgtgaacacgcacataaaacttttctactcaatcgcatgtt
caaactcgatactttaattagggacaccctgtattacGTAATACTCGACC
AATAGGATCTCAATTGATTGATGAACATCCAATCAGAACATTCGAGACTA
CCCTTACATCATAACCAGCCAATCAGCATTCAGGAATCTCATTAACGAAC
CAATCAAATCAATGGAAGTTAGCATAAACATCGAATGATTCGAGATATTC
CTGAAGAGCTCGATAACAAAATTCGTACTGGTCCTAAAGagaaaagaatt
tgataaaaatggaATCTACCTTGATGGAATAAGAAGGACACAAAAATCAT
TGGAAAATTAACTTCAgtagtactttaatgggataaattttcgcggggat
taaatttcgcggttgagctcatccgcgaaatttta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052903-exon-scaffold_222-1491911889:130339..130802 | TCONS_00052903-exon-scaffold_222-1491911889:130339..130802 | Clytia hemisphaerica | exon |
| TCONS_00052903-exon-scaffold_222-1510915933:130339..130802 | TCONS_00052903-exon-scaffold_222-1510915933:130339..130802 | Clytia hemisphaerica | exon |
| TCONS_00052903-exon-scaffold_222-1575043694:130339..130802 | TCONS_00052903-exon-scaffold_222-1575043694:130339..130802 | Clytia hemisphaerica | exon |
| TCONS_00052903-exon-scaffold_222-1491911889:131166..131523 | TCONS_00052903-exon-scaffold_222-1491911889:131166..131523 | Clytia hemisphaerica | exon |
| TCONS_00052903-exon-scaffold_222-1510915933:131166..131523 | TCONS_00052903-exon-scaffold_222-1510915933:131166..131523 | Clytia hemisphaerica | exon |
| TCONS_00052903-exon-scaffold_222-1575043694:131166..131523 | TCONS_00052903-exon-scaffold_222-1575043694:131166..131523 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_222 | supercontig | scaffold_222:130339..131523 + |
Blast
The following BLAST results are available for this feature:
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