TCONS_00052874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052874
Unique NameTCONS_00052874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052874 ID=TCONS_00052874|Name=TCONS_00052874|organism=Clytia hemisphaerica|type=transcript|length=472bp
GTTTACTTGATCAGCAATGTCTACCATGAatagaaataagaatttctgtc
ctaTATATTCTGTCAGCAGATTGGGTGGCAGGCCAGGTGAGCGTATTTCA
TCCTACAGTATTGGGACTTATCAGCACTGTGCTCTGTACTGGCCAGGTCG
ATTTGACCAGCATCTTTGAACCACAAAATCACCTGTAGCTCTTAATGAGA
GAAATAATGGGCAGAAGGGAAATTCCATACTTTTTATTGACTCCTTTGGA
GCCAAGCTCTTACCGTCTCAAGAGGGAGCCTTGAGACTGCACTttagaag
atagttggacagaagtTCTATGAATTCTTCACATACAGTATATTTATTAT
CCTTTAGAACCATGCAGTGTCAAGGCTTTCCTCCCTCTTGATTCTCTTCA
ATTCAAAGTTTGAATCTAGAGGAGTCATTCACTAAATTCCTCagtgaatt
tcaattttttccagtTCTTCTT
Run BLAST on NCBI

transcript from alignment at scaffold_220:96648..97119

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052874 ID=TCONS_00052874|Name=TCONS_00052874|organism=Clytia hemisphaerica|type=transcript|length=472bp|location=Sequence derived from alignment at scaffold_220:96648..97119 (Clytia hemisphaerica)
AAGAAGAactggaaaaaattgaaattcactGAGGAATTTAGTGAATGACT
CCTCTAGATTCAAACTTTGAATTGAAGAGAATCAAGAGGGAGGAAAGCCT
TGACACTGCATGGTTCTAAAGGATAATAAATATACTGTATGTGAAGAATT
CATAGAacttctgtccaactatcttctaaAGTGCAGTCTCAAGGCTCCCT
CTTGAGACGGTAAGAGCTTGGCTCCAAAGGAGTCAATAAAAAGTATGGAA
TTTCCCTTCTGCCCATTATTTCTCTCATTAAGAGCTACAGGTGATTTTGT
GGTTCAAAGATGCTGGTCAAATCGACCTGGCCAGTACAGAGCACAGTGCT
GATAAGTCCCAATACTGTAGGATGAAATACGCTCACCTGGCCTGCCACCC
AATCTGCTGACAGAATATAtaggacagaaattcttatttctatTCATGGT
AGACATTGCTGATCAAGTAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033402XLOC_033402Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052874-exon-scaffold_220-1491911889:96648..97119TCONS_00052874-exon-scaffold_220-1491911889:96648..97119Clytia hemisphaericaexon
TCONS_00052874-exon-scaffold_220-1510915933:96648..97119TCONS_00052874-exon-scaffold_220-1510915933:96648..97119Clytia hemisphaericaexon
TCONS_00052874-exon-scaffold_220-1575043694:96648..97119TCONS_00052874-exon-scaffold_220-1575043694:96648..97119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:96648..97119 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.152737	0.149429	0.727661	0.862511	0.520292	0.487091	0	0	0	0.269521	0.179431	0.465851	0.153197	0.082202	0.101266	0.103795	0	0.450166	0	0.190851	0	0.140617	0	0.129259	0	0	0.748622	0.152546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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