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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052872 ID=TCONS_00052872|Name=TCONS_00052872|organism=Clytia hemisphaerica|type=transcript|length=3090bp
cacCCGGTAGTATACTGCTTGAAGTTAGTTAGAGACGTCTTGTTCACCAT
AACCTTCAAAACAGAAGCCTAATAAGAATTAAAGTTTGTGTTCTTCAAAT
ATGTTTTGGACGTTCCAACTTACATAACTTTccttaaaatttgtttttaa
tagaaaataaaattgaaacagaTGTGAAATGCTCTCTTGGTGACATGAAT
GAAAGCACGTCTGATAACGAAGTCGAAGAAGAAGACCAAGAGGAAGATGA
CCTCTCTTGGGAATTAGAATCCGATGAATTGGTTGAACTGATCATGAGTG
ATGATTCCCATTTTGAGGATATTCGTAAATTCATCAAAGAAAATGCTCCT
TTTAATGTCAATTATTGTCACAATGGTTGGACACCATTACATTATGCAAC
AGTGAAAAACAAAATAGATGTTTGCAAATTACTTGTTGAACTTGGTTCAG
ATGTAAATTTTATGGCTGTTGCTGTTCCTTGGACTTTTATAGATTATACT
GATATTGGGCGATCTCCTTTCCAACTTTCATGTGGACGTGCTGTTTCATT
TGatactttcaaatttttacttaacAATGGTGGGGAAGTAAACAAGAGTT
GGTGTGGAATAACACCCTTAATGTTTATTGGAAGAGAACCTGAACTAGAA
GATGGCCTACATGATATCGAGACTCAAGAACAAAAATTACTATTGCTTTT
GGAACAGGGTGCAGACGCAAGTGCCCATGACATGTATGGGAAAAATGTTC
TTCATCATTTTGACTTGTAttctgaagatgaaaatgaagaagaactaGTT
TTGGGGATGATTCAAAGTATAATCAATCAAAATCTTGACATAATTAATAG
AAGAGATAGTTGGGGTTTTACACCACTTCGAACATCCACTGAAGTTCTAC
GGCTTAGTCGTATAgaacttcttttgaaaaatggcGCAGATATCCATCAA
TCACGGACACCAAGAGATGGTAGCACCATTATTCATGCTCTAAAACAAAT
CAATGAAGATGAtgtgacttcaaattttgatacaCGTTTTGAAAGTTGTC
TACAAATACTTTTAAACACAGGAATAAGTATCAACACTGTCACGTTCATG
GGGAACAGTATTCTTCATGACATAACCTGTGGTACCCATTCAAAGGACAC
agtaagaaaacttttaaaacatgGAGCAAACATCAATCAACAAAACGTGT
TTGGTCATACACCATTACACGCCTGTTTGACTTATAAAGATCTTCCTAAG
AATGAAGATTACTTGAAAAATAGATTAGAAATAGTTGAGCTGCTTTTTAA
TTCAGCAGCTGATGCTAATATAAGAACTGTGAATGGTATGACACCTTTAA
TGACTGCTGTTAGAGGAAACGTCTCAGAACATGTATCCCTCTTATTAAAA
CTACTTACTGGTGAATATGATTTGCTAGCAACTGATAAATTTGGAAGGAC
AGCTCTTCACCACTGCATCATTAAAGCTAATGAGATAAAAGGACTTGTGG
GTGCAATGAAAGGTTGGGGAATAGCAGATAACAAGGAAATCTTCGAAATG
CTCATAAAATCTCGCATTAAACCCAATTTAGAGGATTGTTTTGGTAAAAA
GGCTATATATTACACAAAGTTTTTAAGTGAGCATcagaaagaatttttta
aacaacatcttgaagaagaaaatgataaaGTAGAAACAGATGAATGGTTA
AACTATCAAACAAGCAAAAACGTTCtaggaaattattttgatttaactAA
ATCCAGCAATCCACATTCCAAAGAAAACGAGAAGGTTTTAAAAGAATTGT
TCGAAACAAAAGGAATAGGGTCAGTCCATGCACTGGAAGAAACCTCGACT
ATTAACAAGgaaattgaagaattgatgGGTGAGATTTGTcatttgataaa
caaaaaatgCAAGTATGGATATCAATACAGTCTTCTACTTTCAGGAGGTG
TAGGAGAAGGCACCAAAATTGGTTTCCCGGATGAATTCGATTATCTCCTT
ATGATTGAAGGTTTTCAAGATCATCTTACACCTGAGGATGTAAAACCAGG
CTATGTCAAATTGAAATTGTCAGAGAAGAAGACAAACCCTTTTTGCAGTG
AAGGATGTTTTGATAGTGTCAAATTCACAAGTTATTTTTATGAATTAGTA
AACAGTGCTCTTCAATCACCATTTATTGAGAACACTAGATTTTACTTATT
TCCAAATGAAGGTGATTTCAACAATGAGCGCATAAAGAAAACCGCAAACT
TTTTAATCACAATGGAATACTAttcgaaaaattttggaacaatagaactt
ACAATTGATTTAGTTCctgttttaaaattaaaacatggATGGTGGCCTAG
TTATTGCAGCAATCCAAccaaatttcaagaacattTATGTGCAACTCTTA
CAAAGCCTGCGGGAACACTTCAAGGACAGAATCTTCATTTAAGAATATCA
ACATCATTGGTTGAATTGAGTGTTATCGAACGCTTACCAAATACTGTCAA
AAGTGCATATACCATCCTGAAAGTTTTAAAGGATATTTGCAAATGCTCGG
TCAATGAAATTGTTTACAGGGTTTCATTATATATAAATACGTACCTAATT
AAGAATGCTTTAATGAAATATGCTATTGAAAATGAATATAACGAACTAGA
AGCAGAGGAGGACGTAGTTGATCATGttataaacattttgaaaaacataa
gtgtcaattcttttttctttcctgGAATGGACATTGAAAGACCAATTGAA
TTCGATGAAGAAACATATGACCATATGCACGATGTTGATTATAGAAATAC
TATGATTGAAACTTTGATTAATTTTCTACGATCTTAAAAACAGCTTAGCT
gaaattccatttttttaattattaatgTAATCTTAGGCAATTTTAATCCC
TATTAGAATTTCACTTGAAAAATCTACAATCTGATTAATCAAGCTTTTCG
ATAAATTTACCGACCGATCTTGACTTTGaccatttttatgttttttaaaa
gtaaaagactTCAAATATGAAAACTGAACTCTCATGACATGGAGAGGTGA
TTTTTTGTTGTGATAACATAATGATATGCTAGAATTTTAT Run BLAST on NCBI protein sequence of TCONS_00052872-protein >TCONS_00052872-protein ID=TCONS_00052872-protein|Name=TCONS_00052872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=880bp
MNESTSDNEVEEEDQEEDDLSWELESDELVELIMSDDSHFEDIRKFIKEN
APFNVNYCHNGWTPLHYATVKNKIDVCKLLVELGSDVNFMAVAVPWTFID
YTDIGRSPFQLSCGRAVSFDTFKFLLNNGGEVNKSWCGITPLMFIGREPE
LEDGLHDIETQEQKLLLLLEQGADASAHDMYGKNVLHHFDLYSEDENEEE
LVLGMIQSIINQNLDIINRRDSWGFTPLRTSTEVLRLSRIELLLKNGADI
HQSRTPRDGSTIIHALKQINEDDVTSNFDTRFESCLQILLNTGISINTVT
FMGNSILHDITCGTHSKDTVRKLLKHGANINQQNVFGHTPLHACLTYKDL
PKNEDYLKNRLEIVELLFNSAADANIRTVNGMTPLMTAVRGNVSEHVSLL
LKLLTGEYDLLATDKFGRTALHHCIIKANEIKGLVGAMKGWGIADNKEIF
EMLIKSRIKPNLEDCFGKKAIYYTKFLSEHQKEFFKQHLEEENDKVETDE
WLNYQTSKNVLGNYFDLTKSSNPHSKENEKVLKELFETKGIGSVHALEET
STINKEIEELMGEICHLINKKCKYGYQYSLLLSGGVGEGTKIGFPDEFDY
LLMIEGFQDHLTPEDVKPGYVKLKLSEKKTNPFCSEGCFDSVKFTSYFYE
LVNSALQSPFIENTRFYLFPNEGDFNNERIKKTANFLITMEYYSKNFGTI
ELTIDLVPVLKLKHGWWPSYCSNPTKFQEHLCATLTKPAGTLQGQNLHLR
ISTSLVELSVIERLPNTVKSAYTILKVLKDICKCSVNEIVYRVSLYINTY
LIKNALMKYAIENEYNELEAEEDVVDHVINILKNISVNSFFFPGMDIERP
IEFDEETYDHMHDVDYRNTMIETLINFLRS Run BLAST on NCBI transcript from alignment at scaffold_220:25648..28737 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052872 ID=TCONS_00052872|Name=TCONS_00052872|organism=Clytia hemisphaerica|type=transcript|length=3090bp|location=Sequence derived from alignment at scaffold_220:25648..28737 (Clytia hemisphaerica)
ATAAAATTCTAGCATATCATTATGTTATCACAACAAAAAATCACCTCTCC
ATGTCATGAGAGTTCAGTTTTCATATTTGAagtcttttacttttaaaaaa
cataaaaatggtCAAAGTCAAGATCGGTCGGTAAATTTATCGAAAAGCTT
GATTAATCAGATTGTAGATTTTTCAAGTGAAATTCTAATAGGGATTAAAA
TTGCCTAAGATTAcattaataattaaaaaaatggaatttcAGCTAAGCTG
TTTTTAAGATCGTAGAAAATTAATCAAAGTTTCAATCATAGTATTTCTAT
AATCAACATCGTGCATATGGTCATATGTTTCTTCATCGAATTCAATTGGT
CTTTCAATGTCCATTCcaggaaagaaaaaagaattgacacttatgttttt
caaaatgtttataaCATGATCAACTACGTCCTCCTCTGCTTCTAGTTCGT
TATATTCATTTTCAATAGCATATTTCATTAAAGCATTCTTAATTAGGTAC
GTATTTATATATAATGAAACCCTGTAAACAATTTCATTGACCGAGCATTT
GCAAATATCCTTTAAAACTTTCAGGATGGTATATGCACTTTTGACAGTAT
TTGGTAAGCGTTCGATAACACTCAATTCAACCAATGATGTTGATATTCTT
AAATGAAGATTCTGTCCTTGAAGTGTTCCCGCAGGCTTTGTAAGAGTTGC
ACATAaatgttcttgaaatttggTTGGATTGCTGCAATAACTAGGCCACC
ATccatgttttaattttaaaacagGAACTAAATCAATTGTaagttctatt
gttccaaaatttttcgaaTAGTATTCCATTGTGATTAAAAAGTTTGCGGT
TTTCTTTATGCGCTCATTGTTGAAATCACCTTCATTTGGAAATAAGTAAA
ATCTAGTGTTCTCAATAAATGGTGATTGAAGAGCACTGTTTACTAATTCA
TAAAAATAACTTGTGAATTTGACACTATCAAAACATCCTTCACTGCAAAA
AGGGTTTGTCTTCTTCTCTGACAATTTCAATTTGACATAGCCTGGTTTTA
CATCCTCAGGTGTAAGATGATCTTGAAAACCTTCAATCATAAGGAGATAA
TCGAATTCATCCGGGAAACCAATTTTGGTGCCTTCTCCTACACCTCCTGA
AAGTAGAAGACTGTATTGATATCCATACTTGcattttttgtttatcaaat
gACAAATCTCACCcatcaattcttcaatttcCTTGTTAATAGTCGAGGTT
TCTTCCAGTGCATGGACTGACCCTATTCCTTTTGTTTCGAACAATTCTTT
TAAAACCTTCTCGTTTTCTTTGGAATGTGGATTGCTGGATTTagttaaat
caaaataatttcctaGAACGTTTTTGCTTGTTTGATAGTTTAACCATTCA
TCTGTTTCTACtttatcattttcttcttcaagatgttgtttaaaaaattc
tttctgATGCTCACTTAAAAACTTTGTGTAATATATAGCCTTTTTACCAA
AACAATCCTCTAAATTGGGTTTAATGCGAGATTTTATGAGCATTTCGAAG
ATTTCCTTGTTATCTGCTATTCCCCAACCTTTCATTGCACCCACAAGTCC
TTTTATCTCATTAGCTTTAATGATGCAGTGGTGAAGAGCTGTCCTTCCAA
ATTTATCAGTTGCTAGCAAATCATATTCACCAGTAAGTAGTTTTAATAAG
AGGGATACATGTTCTGAGACGTTTCCTCTAACAGCAGTCATTAAAGGTGT
CATACCATTCACAGTTCTTATATTAGCATCAGCTGCTGAATTAAAAAGCA
GCTCAACTATTTCTAATCTATTTTTCAAGTAATCTTCATTCTTAGGAAGA
TCTTTATAAGTCAAACAGGCGTGTAATGGTGTATGACCAAACACGTTTTG
TTGATTGATGTTTGCTCcatgttttaaaagttttcttactGTGTCCTTTG
AATGGGTACCACAGGTTATGTCATGAAGAATACTGTTCCCCATGAACGTG
ACAGTGTTGATACTTATTCCTGTGTTTAAAAGTATTTGTAGACAACTTTC
AAAACGtgtatcaaaatttgaagtcacaTCATCTTCATTGATTTGTTTTA
GAGCATGAATAATGGTGCTACCATCTCTTGGTGTCCGTGATTGATGGATA
TCTGCgccatttttcaaaagaagttcTATACGACTAAGCCGTAGAACTTC
AGTGGATGTTCGAAGTGGTGTAAAACCCCAACTATCTCTTCTATTAATTA
TGTCAAGATTTTGATTGATTATACTTTGAATCATCCCCAAAACtagttct
tcttcattttcatcttcagaaTACAAGTCAAAATGATGAAGAACATTTTT
CCCATACATGTCATGGGCACTTGCGTCTGCACCCTGTTCCAAAAGCAATA
GTAATTTTTGTTCTTGAGTCTCGATATCATGTAGGCCATCTTCTAGTTCA
GGTTCTCTTCCAATAAACATTAAGGGTGTTATTCCACACCAACTCTTGTT
TACTTCCCCACCATTgttaagtaaaaatttgaaagtatCAAATGAAACAG
CACGTCCACATGAAAGTTGGAAAGGAGATCGCCCAATATCAGTATAATCT
ATAAAAGTCCAAGGAACAGCAACAGCCATAAAATTTACATCTGAACCAAG
TTCAACAAGTAATTTGCAAACATCTATTTTGTTTTTCACTGTTGCATAAT
GTAATGGTGTCCAACCATTGTGACAATAATTGACATTAAAAGGAGCATTT
TCTTTGATGAATTTACGAATATCCTCAAAATGGGAATCATCACTCATGAT
CAGTTCAACCAATTCATCGGATTCTAATTCCCAAGAGAGGTCATCTTCCT
CTTGGTCTTCTTCTTCGACTTCGTTATCAGACGTGCTTTCATTCATGTCA
CCAAGAGAGCATTTCACAtctgtttcaattttattttctattaaaaacaa
attttaaggAAAGTTATGTAAGTTGGAACGTCCAAAACATATTTGAAGAA
CACAAACTTTAATTCTTATTAGGCTTCTGTTTTGAAGGTTATGGTGAACA
AGACGTCTCTAACTAACTTCAAGCAGTATACTACCGGgtg Coding sequence (CDS) from alignment at scaffold_220:25648..28737 >TCONS_00052872 ID=TCONS_00052872|Name=TCONS_00052872|organism=Clytia hemisphaerica|type=CDS|length=2643bp|location=Sequence derived from alignment at scaffold_220:25648..28737 (Clytia hemisphaerica)
TTAAGATCGTAGAAAATTAATCAAAGTTTCAATCATAGTATTTCTATAAT
CAACATCGTGCATATGGTCATATGTTTCTTCATCGAATTCAATTGGTCTT
TCAATGTCCATTCcaggaaagaaaaaagaattgacacttatgtttttcaa
aatgtttataaCATGATCAACTACGTCCTCCTCTGCTTCTAGTTCGTTAT
ATTCATTTTCAATAGCATATTTCATTAAAGCATTCTTAATTAGGTACGTA
TTTATATATAATGAAACCCTGTAAACAATTTCATTGACCGAGCATTTGCA
AATATCCTTTAAAACTTTCAGGATGGTATATGCACTTTTGACAGTATTTG
GTAAGCGTTCGATAACACTCAATTCAACCAATGATGTTGATATTCTTAAA
TGAAGATTCTGTCCTTGAAGTGTTCCCGCAGGCTTTGTAAGAGTTGCACA
TAaatgttcttgaaatttggTTGGATTGCTGCAATAACTAGGCCACCATc
catgttttaattttaaaacagGAACTAAATCAATTGTaagttctattgtt
ccaaaatttttcgaaTAGTATTCCATTGTGATTAAAAAGTTTGCGGTTTT
CTTTATGCGCTCATTGTTGAAATCACCTTCATTTGGAAATAAGTAAAATC
TAGTGTTCTCAATAAATGGTGATTGAAGAGCACTGTTTACTAATTCATAA
AAATAACTTGTGAATTTGACACTATCAAAACATCCTTCACTGCAAAAAGG
GTTTGTCTTCTTCTCTGACAATTTCAATTTGACATAGCCTGGTTTTACAT
CCTCAGGTGTAAGATGATCTTGAAAACCTTCAATCATAAGGAGATAATCG
AATTCATCCGGGAAACCAATTTTGGTGCCTTCTCCTACACCTCCTGAAAG
TAGAAGACTGTATTGATATCCATACTTGcattttttgtttatcaaatgAC
AAATCTCACCcatcaattcttcaatttcCTTGTTAATAGTCGAGGTTTCT
TCCAGTGCATGGACTGACCCTATTCCTTTTGTTTCGAACAATTCTTTTAA
AACCTTCTCGTTTTCTTTGGAATGTGGATTGCTGGATTTagttaaatcaa
aataatttcctaGAACGTTTTTGCTTGTTTGATAGTTTAACCATTCATCT
GTTTCTACtttatcattttcttcttcaagatgttgtttaaaaaattcttt
ctgATGCTCACTTAAAAACTTTGTGTAATATATAGCCTTTTTACCAAAAC
AATCCTCTAAATTGGGTTTAATGCGAGATTTTATGAGCATTTCGAAGATT
TCCTTGTTATCTGCTATTCCCCAACCTTTCATTGCACCCACAAGTCCTTT
TATCTCATTAGCTTTAATGATGCAGTGGTGAAGAGCTGTCCTTCCAAATT
TATCAGTTGCTAGCAAATCATATTCACCAGTAAGTAGTTTTAATAAGAGG
GATACATGTTCTGAGACGTTTCCTCTAACAGCAGTCATTAAAGGTGTCAT
ACCATTCACAGTTCTTATATTAGCATCAGCTGCTGAATTAAAAAGCAGCT
CAACTATTTCTAATCTATTTTTCAAGTAATCTTCATTCTTAGGAAGATCT
TTATAAGTCAAACAGGCGTGTAATGGTGTATGACCAAACACGTTTTGTTG
ATTGATGTTTGCTCcatgttttaaaagttttcttactGTGTCCTTTGAAT
GGGTACCACAGGTTATGTCATGAAGAATACTGTTCCCCATGAACGTGACA
GTGTTGATACTTATTCCTGTGTTTAAAAGTATTTGTAGACAACTTTCAAA
ACGtgtatcaaaatttgaagtcacaTCATCTTCATTGATTTGTTTTAGAG
CATGAATAATGGTGCTACCATCTCTTGGTGTCCGTGATTGATGGATATCT
GCgccatttttcaaaagaagttcTATACGACTAAGCCGTAGAACTTCAGT
GGATGTTCGAAGTGGTGTAAAACCCCAACTATCTCTTCTATTAATTATGT
CAAGATTTTGATTGATTATACTTTGAATCATCCCCAAAACtagttcttct
tcattttcatcttcagaaTACAAGTCAAAATGATGAAGAACATTTTTCCC
ATACATGTCATGGGCACTTGCGTCTGCACCCTGTTCCAAAAGCAATAGTA
ATTTTTGTTCTTGAGTCTCGATATCATGTAGGCCATCTTCTAGTTCAGGT
TCTCTTCCAATAAACATTAAGGGTGTTATTCCACACCAACTCTTGTTTAC
TTCCCCACCATTgttaagtaaaaatttgaaagtatCAAATGAAACAGCAC
GTCCACATGAAAGTTGGAAAGGAGATCGCCCAATATCAGTATAATCTATA
AAAGTCCAAGGAACAGCAACAGCCATAAAATTTACATCTGAACCAAGTTC
AACAAGTAATTTGCAAACATCTATTTTGTTTTTCACTGTTGCATAATGTA
ATGGTGTCCAACCATTGTGACAATAATTGACATTAAAAGGAGCATTTTCT
TTGATGAATTTACGAATATCCTCAAAATGGGAATCATCACTCATGATCAG
TTCAACCAATTCATCGGATTCTAATTCCCAAGAGAGGTCATCTTCCTCTT
GGTCTTCTTCTTCGACTTCGTTATCAGACGTGCTTTCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052872-exon-scaffold_220-1491911889:25648..28737 | TCONS_00052872-exon-scaffold_220-1491911889:25648..28737 | Clytia hemisphaerica | exon |
| TCONS_00052872-exon-scaffold_220-1510915933:25648..28737 | TCONS_00052872-exon-scaffold_220-1510915933:25648..28737 | Clytia hemisphaerica | exon |
| TCONS_00052872-exon-scaffold_220-1575043694:25648..28737 | TCONS_00052872-exon-scaffold_220-1575043694:25648..28737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:25648..28737 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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