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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052869 ID=TCONS_00052869|Name=TCONS_00052869|organism=Clytia hemisphaerica|type=transcript|length=1845bp
CTTCTTCAACAACAACTAGGACAAGTTTtgcaacagcaacaacaacctCA
AACTCAACATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAAGA
TTATCAAACAAATAAAGAATGGTGAGTTCATTGACTTTGACCTCTTGCTG
CCTAGCAATATTGGTAGGCCTGCCAATACTTCTGTAGCATTTGCCTTCGA
TGGAGATGGAAATATATATCTCCAACAGCGTAGTGACTCTAGTctgttta
caaaaaaagctaaggTTATTGACCTAAATTCATGGCTGATGGCGTGGTCC
AGGTTCATTCAAGCCACCTTGGTTTTTCGCCCTTTTCTCGTCAACCAGTT
GATTGCATACCAAGTGTATATTGCACAACTAGCCAACGATTACTTTTTTA
ATGGGTGGTATGTATATGACAAAGCCTTCAGAACTTACATCGCAAACAAC
CCCACTGCTAGGTGGGATATTACTAATACAACATTATTCAACATGCACCT
CCAGGGTCAAAGGGAGCCTAGCAAATGTTACCTTTGCCAAAGCAAGGACC
ATCTTGCCCCTCGATGCCCCGCGTCTTCTGCTTCCCTTTCTGGTCGGTCG
TCCTTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTT
GCCTTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTCGTGCAC
AGTACTTCCAACCCTACCCTTCCCTCCGCCAGCCCTTTCCTAACCCCCAG
CAAGCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACAC
AATCTTTTCAACACAAGCCTCCCTTGTCGTCCCGGCTGCAGGTACGTCCA
CACCTGCCTCATCTGCAGCGACAACCACCCAGCCCTCCAGTGCCCCTACC
GTTAGCGATTTTCAAACCCTACTTGACTTTCCCTCCTTTTCCTTTCTCCC
CTCTCCCTCTAAGCCAGCCACCTCTGTGAAACCTGAAGTGCTCCACGAAT
TNCCAGCCCTCCAGTGCCCCTACCGTTAGCGATTATCAAACCCTACTTGA
CTTTCCCTCCTTTTCCTTTCTCCCCTCTCCCTCTAAGCCAGCCACCTCTG
TGAAACCTGAAGTGCTCCATGAATGGCTCTCTGGGTATGACCCTGAAATA
AGAGATTTTTTAGTGTCCGGGTTTTTCTATGGATTCCACATTGGATTTCA
AGGGCCCCCTCCCTCAGGACCTGAACGCAACAACCTTTCGGCCGATTCTA
ACGGTGAGGCTGTGTCTACAGCCATCTTGAAAGAATTGAAGCGGGGACAT
ACCGCAGGCCCCTTCGACTCCCACCCTCTACCTTCCTTCTTCTGTTCCCC
ACTTGGTGCTGCCCCAAAGAAAGATGGAACCCAACGTGTCATCCTGGACT
TATCCCCCCCTGGCTCTTCTGTTAATGATGGAATCCCTATCAATCTAACT
CATGTGGAATACACATCCTTTGATGAAGCCCTCAACATGATCCGCCTAGT
GGGCCCAGGTTGTTTTATGGGAAAAATCGACATTAAGCATGCCTTTCGCC
TATGCCCCGTTCACCCTGATGACTGGCCCCTTCTAGGTTACCATTGGCAA
GGTAGGTATTCTTTTGATCTTTGTCTCCCTTTTGGCAGCCGATCCTCCCC
CTGTATTTTCAACATGTTTGCTGAAGCTCTGCAGTGGATTCTTGTACATA
AATGTCTTCTATCTGCTCTCTCCCACTATCTTGACAACTTCATTCTGTGT
GCGGTTACTTCAGTCGAAACTCAGCATAAGATGAATGTTACACAGGCTCT
CTTCAAGGGCGTTGGTGTTCCCATCGCTTTGGACAAATTGGAAGG Run BLAST on NCBI transcript from alignment at scaffold_220:503909..505753- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052869 ID=TCONS_00052869|Name=TCONS_00052869|organism=Clytia hemisphaerica|type=transcript|length=1845bp|location=Sequence derived from alignment at scaffold_220:503909..505753- (Clytia hemisphaerica)
CTTCTTCAACAACAACTAGGACAAGTTTTGCAACAGCAACAACAACCTCA
AACTCAACATCAATTGTGTACGAACGAACTGCCTGCTATTCCAGCCAAGA
TTATCAAACAAATAAAGAATGGTGAGTTCATTGACTTTGACCTCTTGCTG
CCTAGCAATATTGGTAGGCCTGCCAATACTTCTGTAGCATTTGCCTTCGA
TGGAGATGGAAATATATATCTCCAACAGCGTAGTGACTCTAGTCTGTTTA
CAAAAAAAGCTAAGGTTATTGACCTAAATTCATGGCTGATGGCGTGGTCC
AGGTTCATTCAAGCCACCTTGGTTTTTCGCCCTTTTCTCGTCAACCAGTT
GATTGCATACCAAGTGTATATTGCACAACTAGCCAACGATTACTTTTTTA
ATGGGTGGTATGTATATGACAAAGCCTTCAGAACTTACATCGCAAACAAC
CCCACTGCTAGGTGGGATATTACTAATACAACATTATTCAACATGCACCT
CCAGGGTCAAAGGGAGCCTAGCAAATGTTACCTTTGCCAAAGCAAGGACC
ATCTTGCCCCTCGATGCCCCGCGTCTTCTGCTTCCCTTTCTGGTCGGTCG
TCCTTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTT
GCCTTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTCGTGCAC
AGTACTTCCAACCCTACCCTTCCCTCCGCCAGCCCTTTCCTAACCCCCAG
CAAGCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACAC
AATCTTTTCAACACAAGCCTCCCTTGTCGTCCCGGCTGCAGGTACGTCCA
CACCTGCCTCATCTGCAGCGACAACCACCCAGCCCTCCAGTGCCCCTACC
GTTAGCGATTTTCAAACCCTACTTGACTTTCCCTCCTTTTCCTTTCTCCC
CTCTCCCTCTAAGCCAGCCACCTCTGTGAAACCTGAAGTGCTCCACGAAT
TNCCAGCCCTCCAGTGCCCCTACCGTTAGCGATTATCAAACCCTACTTGA
CTTTCCCTCCTTTTCCTTTCTCCCCTCTCCCTCTAAGCCAGCCACCTCTG
TGAAACCTGAAGTGCTCCATGAATGGCTCTCTGGGTATGACCCTGAAATA
AGAGATTTTTTAGTGTCCGGGTTTTTCTATGGATTCCACATTGGATTTCA
AGGGCCCCCTCCCTCAGGACCTGAACGCAACAACCTTTCGGCCGATTCTA
ACGGTGAGGCTGTGTCTACAGCCATCTTGAAAGAATTGAAGCGGGGACAT
ACCGCAGGCCCCTTCGACTCCCACCCTCTACCTTCCTTCTTCTGTTCCCC
ACTTGGTGCTGCCCCAAAGAAAGATGGAACCCAACGTGTCATCCTGGACT
TATCCCCCCCTGGCTCTTCTGTTAATGATGGAATCCCTATCAATCTAACT
CATGTGGAATACACATCCTTTGATGAAGCCCTCAACATGATCCGCCTAGT
GGGCCCAGGTTGTTTTATGGGAAAAATCGACATTAAGCATGCCTTTCGCC
TATGCCCCGTTCACCCTGATGACTGGCCCCTTCTAGGTTACCATTGGCAA
GGTAGGTATTCTTTTGATCTTTGTCTCCCTTTTGGCAGCCGATCCTCCCC
CTGTATTTTCAACATGTTTGCTGAAGCTCTGCAGTGGATTCTTGTACATA
AATGTCTTCTATCTGCTCTCTCCCACTATCTTGACAACTTCATTCTGTGT
GCGGTTACTTCAGTCGAAACTCAGCATAAGATGAATGTTACACAGGCTCT
CTTCAAGGGCGTTGGTGTTCCCATCGCTTTGGACAAATTGGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052869-exon-scaffold_220-1575043694:503909..505753 | TCONS_00052869-exon-scaffold_220-1575043694:503909..505753 | Clytia hemisphaerica | exon |
| TCONS_00052869-exon-scaffold_220-1510915933:503909..505753 | TCONS_00052869-exon-scaffold_220-1510915933:503909..505753 | Clytia hemisphaerica | exon |
| TCONS_00052869-exon-scaffold_220-1491911889:503909..505753 | TCONS_00052869-exon-scaffold_220-1491911889:503909..505753 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:503909..505753 - |
Blast
The following BLAST results are available for this feature:
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