TCONS_00052866 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052866
Unique NameTCONS_00052866
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052866 ID=TCONS_00052866|Name=TCONS_00052866|organism=Clytia hemisphaerica|type=transcript|length=1844bp
TTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTTGCC
TTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTTGTGCACAGT
ACTTCCAACCCTACCCTTCCCTCTGCCAGCCCTTTCCTAACCCCCAGCAA
GCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACACAAG
CCTCCCTTGTCGCNTTCGATGTTTCCAACCTTACCCACATATCCTTCCTT
GAGATCTTTGCTGCTTTTGTATCTTTAACAACATGGACTGAGTTTTTTAG
GGATTGTAGGATTGTTGTGTTTTCTGACAATGAGGCTACAGTTTCGGTCT
GGTCGTCTTCTTCTTCAAAAGACAAGCAAATGATGGCAATTATTAGGGAG
ATCTTTTTTATTACCGCTAAGAAGAATATCCTCCTTTCCGTCCGTCACAT
CCCGGGTTCCGATAATGTTTTTGCTGATCTCTTGTCCCGTTTACAGGTCG
ACGCATTCAAATTAGTCTGTCCCGAATCTTGTCCGTACCCATCAATTCCA
CCAGTCTCTTCAATGGATCTCTTGGCAAAGATCTTGTTGGGCTCTTAAAA
GACTCGTTGGCCCCTTCCACCCAATCCACCTATATGTGCGGCACCCGCTC
CTACCTCAATTTTTGCGAGACATCTGGTTTGACCCCATTTCCTGTTTCAG
AGTCTTCGTTGTGTTTCTTTGCTGTCTTCTCTTTTAATCGTGGTATAGCT
TGCAAAACCATTAAAGTATACATTACAGGAGTACTACACCAAAACACCAT
GCTGGGTTCCAATGCATCCCTACCCCTTATGCCCGTCCTTCACAAACTCG
TCCGAGGTATCCGACGTCGCCAAGGCAACTCCTTAACCCGCAAACAAAGA
AAACCTATCACCATGTCCCACCTGCGAATTATTTCCAACTTTTTACTGTG
CAGTGGTCACCCTACACACGATAAATACATGCTCCTGACTGCTTGCCTTA
CAGCCTTTTTTGGCTTTTTGAGAGTTTCTGAATTTACTTGCCCATCACTC
AGTTCGTATGACCCAACAGCACACCTCCAAAGATCGGATATTACGTTTAA
CCCGGATTTTTCAATTATGTCCGTCCGAATCAGGGCAAGTAAGACTGATC
CTTTTCGACTTGGTGTGACCATCCGAATTGCCGCCACCTTCGACCAAATT
TGCCCTGTGGGTGCAATGAGGAACTATCTAGCCATGCGTGATTCATCAAT
TGGCCCGctctttaaatttttagatgGCAAATTTCTAACGCGCAGGATAG
TTCATGATCTTCTCGGAAAGTCCCCCCCGCTTGAACACAATTTGAATACC
CATAGTTTTCGCATTGGTGGTGCTTCAGCTGCCCTCTCAGCAGGTGTATC
TGACTCAATGATACGCATCATGGGTAGATGGTCTAGTGATTGCTATCTTA
GGTATCTCAGAATCTCTGACCGAGATATTTCGAAATTTAACACTAACATG
GCTAAGGTAACTTTTGTTTCGTCCACCTGGGACCCAAATAATTGGTGatt
tatataaattttatctCTATTATGTTATACTTTACTATTTGTACCCTATC
TAATGTCTAATTACGTGGCAATATTTCCCTCAGATTAATTTGTTTgtcct
ttcttttttttaatctttatcTACTCCCTTCATTTCCTCCTTTCCTActc
cccatttttcttttaattaaaatttggaCTTGGGTGACGTTGGGGTGTTG
GGTTACTACGTAACCTTGGCAAGTCAGTAGGCAGTTACTTAGATACATCC
CCTAAGGTCAAGGATCCAGTTAGTTAGATACATCCCCTAAGGTC
Run BLAST on NCBI

transcript from alignment at scaffold_220:501135..503844-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052866 ID=TCONS_00052866|Name=TCONS_00052866|organism=Clytia hemisphaerica|type=transcript|length=2710bp|location=Sequence derived from alignment at scaffold_220:501135..503844- (Clytia hemisphaerica)
TTGAATCTTGGCTCAGCTCCTCAACCTGCACACCACACCCCTCGTTTGCC
TTCCCAGCCTGGCCCTCGCCCTCGGCCCCCTTCTTTTCCTTGTGCACAGT
ACTTCCAACCCTACCCTTCCCTCTGCCAGCCCTTTCCTAACCCCCAGCAA
GCTTCCTCTGCTGCCAATACCACGAAGCAATGCCATCTTTTCAACACAAG
CCTCCCTTGTCGCNTTCGATGTTTCCAACCTTACCCACATATCCTTCCTT
GAGATCTTTGCTGCTTTTGTATCTTTAACAACATGGACTGAGTTTTTTAG
GGATTGTAGGATTGTTGTGTTTTCTGACAATGAGGCTACAGTTTCGGTCT
GGTCGTCTTCTTCTTCAAAAGACAAGCAAATGATGGCAATTATTAGGGAG
ATCTTTTTTATTACCGCTAAGAAGAATATCCTCCTTTCCGTCCGTCACAT
CCCGGGTTCCGATAATGTTTTTGCTGATCTCTTGTCCCGTTTACAGGTCG
ACGCATTCAAATTAGTCTGTCCCGAATCTTGTCCGTACCCATCAATTCCA
CCAGTCTCTTCAATGGATCTCTTGGCAAAGATCTTGTTGGGCTCTTAAAA
GACTCGTTGGCCCCTTCCACCCAATCCACCTATATGTGCGGCACCCGCTC
CTACCTCAATTTTTGCGAGACATCTGGTTTGACCCCATTTCCTGTTTCAG
AGTCTTCGTTGTGTTTCTTTGCTGTCTTCTCTTTTAATCGTGGTATAGCT
TGCAAAACCATTAAAGTATACATTACAGGAGTACTACACCAAAACACCAT
GCTGGGTTCCAATGCATCCCTACCCCTTATGCCCGTCCTTCACAAACTCG
TCCGAGGTATCCGACGTCGCCAAGGCAACTCCTTAACCCGCAAACAAAGA
AAACCTATCACCATGTCCCACCTGCGAATTATTTCCAACTTTTTACTGTG
CAGTGGTCACCCTACACACGATAAATACATGCTCCTGACTGCTTGCCTTA
CAGCCTTTTTTGGCTTTTTGAGAGTTTCTGAATTTACTTGCCCATCACTC
AGTTCGTATGACCCAACAGCACACCTCCAAAGATCGGATATTACGTTTAA
CCCGGATTTTTCAATTATGTCCGTCCGAATCAGGGCAAGTAAGACTGATC
CTTTTCGACTTGGTGTGACCATCCGAATTGCCGCCACCTTCGACCAAATT
TGCCCTGTGGGTGCAATGAGGAACTATCTAGCCATGCGTGATTCATCAAT
TGGCCCGCTCTTTAAATTTTTAGATGGCAAATTTCTAACGCGCAGGATAG
TTCATGATCTTCTCGGAAAGTCCCCCCCGCTTGAACACAATTTGAATACC
CATAGTTTTCGCATTGGTGGTGCTTCAGCTGCCCTCTCAGCAGGTGTATC
TGACTCAATGATACGCATCATGGGTAGATGGTCTAGTGATTGCTATCTTA
GGTATCTCAGAATCTCTGACCGAGATATTTCGAAATTTAACACTAACATG
GCTAAGGTAACTTTTGTTTCGTCCACCTGGGACCCAAATAATTGGTGATT
TATATAAATTTTATCTCTATTATGTTATACTTTACTATTTGTACCCTATC
TAATGTCTAATTACGTGGCAATATTTCCCTCAGATTAATTTGTTTGTCCT
TTCTTTTTTTTAATCTTTATCTACTCCCTTCATTTCCTCCTTTCCTACTC
CCCATTTTTCTTTTAATTAAAATTTGGACTTGGGTGACGTTGGGGTGTTG
GGTTACTACGTAACCTTGGCAAGTCAGTAGGCAGTTACTTAGATACATCC
CCTAAGGTCAAGGATCCAGTTAGATCTGGATTAGGTTCGCACACTGTATT
CCCAACGGTGTTAAGGTTCGCCAGGGCAACCTCCCTGTTTATATCAACCT
CCGTCATCAAAACGGGGCTAGGGGGCGACACCTGTCATCAAAACAGGCTA
GGAAAACAGGACACCCGTCGTCAAAACGGGTTAGGCTCTCAGTTATATAT
ATCTTGATGCATCCCCAATGTCATCCCAAGTTCTATTATACATTTTCGGC
ATTCTTGTTTACGTTTCGAAATATACTGTTTCATCACCGCACAATTACGT
TTCTTTAACTTCTTGTTTGCTCATATCCTTTGGTACCTAGATCAGTCCAT
TTCGACCACTTTCAAAAACCTCTCGTACCTTTTCTACTTTGGCTGCTTAA
TTTATTTCCTCAACCTCCTAGGGCCTCATACTTTAATCTAATCTGAGACG
TGGGAATTAATTGGAGCTAAACCTTAGCTTAGGTTAATTCCAAGTCGAAT
GAAGTACATCCCGCCACTGTGCCGAGGCGGTTAAGAAATAGTATATTTCG
GCTGCCGGTTGTTCTTCCCTTGCCTATATATATTCTAGTGTCAAGCCCTC
TTCAAGCTGAGCCTGTATTAATTGCGACTTTAATCTTTCCCTCCCACCCT
CCCCCTGCTTGCCCCCTGTAGTTTCGGTTCTGCTCTCTGCTTCTTCTATT
TTTTTCTCTTTTAGTTATATATCAACTGCGTTCTCATCAGAGCATGGTAA
CTGCTGCTGCGACGGATCCTGATCTCATGGTTTCCTCTGGGCAAGGCTGT
GTTAACCAGAGATTAGGTCATTTGGGTTGCATCATGATACGTTTAGTGTT
GGGTTACTACGTAACCTTGGCAAGTCAGTAGGCAGTTACTTAGATACATC
CCCTAAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033397XLOC_033397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052866-exon-scaffold_220-1575043694:502022..503844TCONS_00052866-exon-scaffold_220-1575043694:502022..503844Clytia hemisphaericaexon
TCONS_00052866-exon-scaffold_220-1575043694:501135..501155TCONS_00052866-exon-scaffold_220-1575043694:501135..501155Clytia hemisphaericaexon
TCONS_00052866-exon-scaffold_220-1510915933:502022..503844TCONS_00052866-exon-scaffold_220-1510915933:502022..503844Clytia hemisphaericaexon
TCONS_00052866-exon-scaffold_220-1510915933:501135..501155TCONS_00052866-exon-scaffold_220-1510915933:501135..501155Clytia hemisphaericaexon
TCONS_00052866-exon-scaffold_220-1491911889:502022..503844TCONS_00052866-exon-scaffold_220-1491911889:502022..503844Clytia hemisphaericaexon
TCONS_00052866-exon-scaffold_220-1491911889:501135..501155TCONS_00052866-exon-scaffold_220-1491911889:501135..501155Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:501135..503844 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.565115	0.391756	0.307111	0.304903	0.775037	0.548458	0.80945	2.17879	0.424358	0.924999	0.816008	0.378514	0.406444	0.858375	0.248798	0.440228	0.0949758	0.463446	0.68027	0.922905	1.12576	0.728401	0	0.127418	0.449325	0.526283	1.28084	1.59429	1.43712	1.09412
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052866 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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