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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052854 ID=TCONS_00052854|Name=TCONS_00052854|organism=Clytia hemisphaerica|type=transcript|length=1138bp
CCTTCTTTCTGTGAGAATAGTTGCTCTAGTAAGGTGGTATCCTCAAATTT
GAAAGAATCGTCAATTGCTGCCATTCTTgtattgagtttaatatttaAAG
AACCAGAGATATCATCAAATAATAagctaaaagaaaaacattaaattaaa
gaTTTGTGACTGGAGCGGTCCGCCATTTTTAGATCTTTGCAAACGTCAAG
GAATATTGTCGTCTAGACGGTGCTTTAAAACTTACTCTCGTTACCGTGTA
TAGCAGGGCTTAAAGAGACATGATTCAGGGGGTCATGTTTCAACAAAGCC
ATTAGTGGAACTCTAGTTTGAAGAATTAAAAATGAGTATAAAATAGTTAG
CGTAAAATTTCTTGATttgaaaaagaatatttttaaagataaaactacaa
acaattaaaaaaaatgaactaTTTCAAGGTCTTACTTTTCTTTCTACCCT
CCGGAaactttgtaaacattcgattGAATAGCGAGACGAAATCATCTTGC
TCCAAATCGGATTCTTGCTGGACAAGctgagaaggaggtgtgtttcaTTT
TTACAAGAGGAGAGACTGCAAAAACTTGTACAACTTTCTCTAAAATTTCA
TTATGGCACAAGTCAAGAGAAAAGTCCTTATCCCTGTCGATGGATCAGAA
GATTCACAAGGAGCTTTCGATTTTTATATTGACAATCTTATGAAGAAGGA
TGATGAAGTTGAAATTTTACACATTCAACATACCCCTCATCTTTCTGTCC
TTAGCTTGCATGGTAGGTAAATTGAAAAACCGTTGTGACTGTAGTACAAG
TTGACAAGACGACCCATAGTATGGCCCAAACATACCCCAAACAGTATCAG
GGTCAAAATTGCCAAAGATTGTTTTCAGGCTTTAGAttttcatagtgtcc
tcctgggttggttccccccactaaaaatcaaaatttttctccattcctcc
ctcttttatttcccccaccatatttcaaaatttttcggttccccactctt
ttttgaattcccccagctatttgaagattttgcgtttccccatatggtta
acataaaaatgccttaaatcaagtttgaaattttggaaagcttgaaaaaa
tagccttgaaagtgctggaaaaatgaaattgtattgaa Run BLAST on NCBI transcript from alignment at scaffold_220:339008..341513- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052854 ID=TCONS_00052854|Name=TCONS_00052854|organism=Clytia hemisphaerica|type=transcript|length=2506bp|location=Sequence derived from alignment at scaffold_220:339008..341513- (Clytia hemisphaerica)
CCTTCTTTCTGTGAGAATAGTTGCTCTAGTAAGGTGGTATCCTCAAATTT
GAAAGAATCGTCAATTGCTGCCATTCTTGTATTGAGTTTAATATTTAAAG
AACCAGAGATATCATCAAATAATAAGCTAAAAGAAAAACATTAAATTAAA
GATTTGTGACTGGAGCGGTCCGCCATTTTTAGATCTTTGCAAACGTCAAG
GAATATTGTCGTCTAGACGGTGCTTTAAAACTTACTCTCGTTACCGTGTA
TAGCAGGGCTTAAAGAGACATGATTCAGGGGGTCATGTTTCAACAAAGCC
ATTAGTGGAACTCTAGTTTGAAGAATTAAAAATGAGTATAAAATAGTTAG
CGTAAAATTTCTTGATTTGAAAAAGAATATTTTTAAAGATAAAACTACAA
ACAATTAAAAAAAATGAACTATTTCAAGGTCTTACTTTTCTTTCTACCCT
CCGGAAACTTTGTAAACATTCGATTGAATAGCGAGACGAAATCATCTTGC
TCCAAATCGGATTCTTGCTGGACAAGCTGAGAAGGAGGTGTGTTTCATTT
TTACAAGAGGAGAGACTGCAAAAACTTGTACAACTTTCTCTAAAATTTCA
TTATGGCACAAGTCAAGAGAAAAGTCCTTATCCCTGTCGATGGATCAGAA
GATTCACAAGGAGCTTTCGATTGTAAGTTATAAATTTCTTTCAAAATGTG
CTATATACATTTGCATTTGGCTGAAGGCACAGTCCTATAGTAGAGCTGTG
TTGTTTCGTGTCAGGGGCCCAAAAATTTGGATCAGTTACGAATCTCCCAT
GGTTTAGCTATAGAAATTTAGGAATTTATTGGGCTGTAATGGACCATTCC
ATTTTTCTTTGCTTAGTGTCGATATTAGACACCATATTAGACGACATATA
AGGGTAAGTGCGTGGTCGTTTGTTTGATTACTTTGATCATTATCGATTAC
TTCGATAATTGAATTTATTAATCATTAATTAGTATCGTCTGGTGTTTAGA
ATACGTGTCATGTTGAATAGTTTAAAACTCCAGCATTAAAACAATAGCAT
TAAATGTAATAACTGTAACTTTGTGTAACATCATGCCATGTCTAATCCTG
CCATAGCAGCTATCTGGTCTGCAAAGAAGTTTGAGTGTTTTTTTAACAGC
TTTATACTCAGGCAAAAGGTCTATTGGGCCATTCTAGAAAATTTTGTTAC
TCCCGTCAGACGACGTGCATTTTTAAATTTTTTTTAGCTTCGGAAATGAA
TTTTGAAAACTTTTGCCCTTGAAAATTCTGTGTAGTCCGCCCCCCATTTT
TACAGACAAACCACTAAGACTGGGCTTAAAAAATCATTGGTTTGCGGTCA
CCCGACCCTAGATTTTAGAGGTGGGTCAGTCGATCGGAATTTTTTTTATT
TTGGCGATTTATGATATTTTCGTCCGTCCATGGAAGGGTTAACAGTTTGT
TTACATTTAGGTAATTTTGAATAAAAAACAGAAGTGCTAGCAGGGAATTT
ACGATTCTTATGCTTGAGACAAACAAGATACAAGTTTTGATTTTCTATTG
TTTGAAGTTTTTGAAGGAAAAAAAATCTTCTTTAAAAATGGCAATAAAAT
TTTTTGGGTCGGCAGCTATTATATTATGGTTGAGTTACAGGAGACTCTGG
GAGCCTATTCTCGCAACTATAGATGCTTTGAGTAAGCATCCCGTCAGCAC
CTTGAACTGACTACCCAATTCCCCTCACATGGCATGGACCCGGGCGAAGG
TTTGTTGTGAGTGGGAATCGAACCTTGGTCGCCTGTACAGGAATCAAGGT
TGATGTCCACTATACCACAACGCCTTTGAGGTAGAGTCGGTCATGTGACA
ATTTTTTAAGTCCAGCTTAAGCAAAGAAAAACTAAGACCACTAAGCAAAG
AAAAACATTTTCAACCTTTCTATAAATTTTAGCTGCTAAAAAGGATGTCG
GAATTAGAGGAGGGGTGTCGATACTAGACCAACTTACGGTATGTGTTCCA
AACCTCAATCAGCTTATTTTCATCACTTTCTTTATTTCAGTTTATATTGA
CAATCTTATGAAGAAGGATGATGAAGTTGAAATTTTACACATTCAACATA
CCCCTCATCTTTCTGTCCTTAGCTTGCATGGTAGGTAAATTGAAAAACCG
TTGTGACTGTAGTACAAGTTGACAAGACGACCCATAGTATGGCCCAAACA
TACCCCAAACAGTATCAGGGTCAAAATTGCCAAAGATTGTTTTCAGGCTT
TAGATTTTCATAGTGTCCTCCTGGGTTGGTTCCCCCCACTAAAAATCAAA
ATTTTTCTCCATTCCTCCCTCTTTTATTTCCCCCACCATATTTCAAAATT
TTTCGGTTCCCCACTCTTTTTTGAATTCCCCCAGCTATTTGAAGATTTTG
CGTTTCCCCATATGGTTAACATAAAAATGCCTTAAATCAAGTTTGAAATT
TTGGAAAGCTTGAAAAAATAGCCTTGAAAGTGCTGGAAAAATGAAATTGT
ATTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052854-exon-scaffold_220-1575043694:340842..341513 | TCONS_00052854-exon-scaffold_220-1575043694:340842..341513 | Clytia hemisphaerica | exon |
| TCONS_00052854-exon-scaffold_220-1575043694:339008..339473 | TCONS_00052854-exon-scaffold_220-1575043694:339008..339473 | Clytia hemisphaerica | exon |
| TCONS_00052854-exon-scaffold_220-1510915933:340842..341513 | TCONS_00052854-exon-scaffold_220-1510915933:340842..341513 | Clytia hemisphaerica | exon |
| TCONS_00052854-exon-scaffold_220-1510915933:339008..339473 | TCONS_00052854-exon-scaffold_220-1510915933:339008..339473 | Clytia hemisphaerica | exon |
| TCONS_00052854-exon-scaffold_220-1491911889:340842..341513 | TCONS_00052854-exon-scaffold_220-1491911889:340842..341513 | Clytia hemisphaerica | exon |
| TCONS_00052854-exon-scaffold_220-1491911889:339008..339473 | TCONS_00052854-exon-scaffold_220-1491911889:339008..339473 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:339008..341513 - |
Blast
The following BLAST results are available for this feature:
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