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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052820 ID=TCONS_00052820|Name=TCONS_00052820|organism=Clytia hemisphaerica|type=transcript|length=443bp
ATCTTCTTAATGAAAGTTTGTGACAAAACAGCCATGGCGTATAGGCGTGT
TCCTCTCACATGTCACAGCAGTCGCCACAGGCAAAGGTTAAATACCCTTA
CCTCTATTGTCAGTTGATGTTGAGTGGTGAAAAGTACAGCATACCGTTCC
AGATACGCGCTCGATACACGTTCCATGTACAATTCCAAGCCAATGATGAT
CCATATCTAGATAGACGCTGGTCAAAATTCTCTAATAACCCGTTCGAAAT
GATAGTTCCGGAAAAATCAACGTCTGATGGCCCAGATGATCAGACAGGGA
TGTATGTTGGAATACCAGTTGGTGCCATTGCGTTTCTTGTCGTCGTTGCA
ATTATTGGTATCTATATTAGacgACGTCATATTGAAGAAGGTTTGGAGCA
AAATGAAATGGTAAGAATAATGGTTACTTTTTATAGAACTGGC Run BLAST on NCBI transcript from alignment at scaffold_220:12498..18128- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052820 ID=TCONS_00052820|Name=TCONS_00052820|organism=Clytia hemisphaerica|type=transcript|length=5631bp|location=Sequence derived from alignment at scaffold_220:12498..18128- (Clytia hemisphaerica)
ATCTTCTTAATGAAAGTTTGTGACAAAACAGCCATGGCGTATAGGCGTGT
TCCTCTCACATGTCACAGCAGTCGCCACAGGCAAAGGTACATTAACTTGC
CAAATGAATTGCGGCGCTAAGTTAAAATGGGAGTGGAGAACGACAACCAC
TACACTATCATACCACTCAATTATTCGATTTTTCTTTCATTATTATTTCT
TTGTAGGTTAAATACCCTTACCTCTATTGTCAGTTGATGTTGAGTGGTGA
AAAGTACAGCATACCGTTCCAGATACGCGCTCGATACACGTTCCATGTAC
AATTCCAAGCCAATGATGATCCATATCTAGATAGACGCTGGTCAAAATTC
TCTAATAACCCGTTCGAAATGATAGTTCCGGAAAAATCAAGTGAGTGGTT
TATTTACTACTTTTAAGGTCTACTTGGCTACACAATATTTATCGCCGGTG
AACAATATTTAACAATAGCGAGTTTATGTATCGGGGGATATCAAGGGCCA
CGGTAAGTGAATTCGACTCAAAACAAAGTCAATACTTGGTGTAAGGCTCT
ATATCGCCTTTGCTCACCTACACAGAAGACGGTATTTTGGTGTTTTTACC
GTGGTCGAGCAACATATCAACTTTCCTTTATACCGTTTTCTTCGATTTAT
CTCGAATACATAAACTCGCTATTATAGTTTTTGGACCGTAGAATGTGTGG
TTTATCACGAGTAGGAATTTACTTTCTGAGAATTGTAAATAGAGCAGGTT
CGGTCCCTGTCAAGTTACAAAGCTGTTAAAACATAAACAATTATGTTTGA
TTAATGTAAGACAAGTCCATGCCGATACGAACCAGTCCAGACCGATCTAC
TGAAGCCAATTCTAATTTTAATTTTTTCGTCGTAATTGACTTACTCCCTG
TATCTTTTTGCCTTGATTCACCCCCTCTTATAAATCACTCCTTCTTATTT
TAGAAAATATTGTTTAAAATACTCCGTTAGAATAAAATTGCACTGTGTCC
CTTCGTCAGTTTATTTAAACACCCCTGTACCATTTATCTCCCCTGTTTAA
ACTTGCATGGTGATATTTTCTTTCGTATTTTATACATATCTAGTAGCGAT
GATACAAAATGATAATGCCCAAAAAATGTGCCCGATTTTAGGAAAAAAAA
TTTGGGCAAATTTCAAACAAAAACGGCTAAAAAAAGGGTTTTTGGACTTT
GTTGAAAACTGTTGAAGACTTTTCAAAAGAAATCTTTTTTATCTGATCGA
ACAGTATTCAAAACATTCAAACGTTCTCTGGAATTTGAAAGTCTTTGGGC
ATTCGAAATAGTGAACAAAAAAATACCGTCATTCGAAAAAAAAAACTGCT
AGTTTCAGCCGGGCTGTTTTGGACCGGTCTAGATTGGCCTTTGTTTCGAT
AAAAAGATCTAAAAACTTGGTTCAGTTAAGATCGACCTACATCGGCAAAG
ATCGGTCAACATCGGCCAAATTCAGCCAGAACCGGTCGAAATTGGTCACA
ACCTCGGCTTTTTAAGGATCGGCCTATTTTCAATGTGCTCCAAATCGCTT
ACAGGGACACATATTGTTAACACCTTTTCAATACATTGTGAGCATTTACT
GACATTTACATTGTGTAGTGTCTGTACAGTGTGTAGTGTCTGTACAGTGT
GTCCCGAAAAAAGCGGACAAATCTTTAAATAAAGTAAAATCCTCAAAACT
TATTACAAAAAAGATTACAATTCGTACTAGTAATCGTCAGTAAATAATCC
TCTGACACAGGACTTGCGAGAGAAAAGAATAAGGGGACAAAAGTGTCCCC
CCCCCCCCCCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNGTGCAAAAAGTGGTAATAGTGCAATT
AACGATTAATCGCACTCCTCTAAACCAATCAGATTCGAGTAATTTTGCAC
GGCTGACGATTATCTTTGTAATCAACTTCAAAGACGATTGAATAGGTTTT
TGAGATAGAAATATGAAGTATACAAGTCATAAAATTTGGCGTGAATTATG
ACGATTTTACTTTATAAAGAAATTTGTCCATTTTTTTCGGGACACACTGT
AGTCCTTTACTTACTTTTCCTTCTTTAAGAATGAGTAGGGGAGTTATTTG
CAAAGGCCTAGGTGGTTCTGAGTTTTGTTGACTTTGATTGAAATTTCGTA
AAATGTTAGGGGTCAAGGGATTTTAACTGTGAAGTTAGTATTTGAGTCCT
AAAAAACTTTCCTAGGCCTTTGCAGAACAACCCCCCCCTCGCGAAAAACT
CTTTAAATACTTTAATCTTTAAAATGGACCAGGTTTGGTTGCGTAGCATA
AATGATGTCAGATCCTAAGGGTTCGCCCCCCTACTAACTAAGCACGAAAT
AATATTTGAAGGTATGAAAAAATCACATTGGCAAATAGATTTATAAAGAG
AAGGGAGAATCTTTAATTTTATTATTGTATTAGCCAGGAGCTGTGACCCG
GGGGGGGGGGGGTACTTAGGCAAATGGAGGGTACGGTATGTGCCGGCCTT
AAGGGTGCCTTTTTTGGATTTCCCGCTAAGGGTCGGAAAAATCAGAAAAT
CAAAATTCAGTCCCATAAGGGTAGGAGAAATAGGAAAATTTCAACTTTTT
ACTCCCAGAAAGATCGAAATTTGGTCAGAATTGGTCAAATTTGTCCCGGT
AAGGGTCGCAAAATTCACAAAATTTTCCTTCGTTTTCTCCTGTTTAGTCC
CGGTAAGGGTCCGAGGGTCAAAGGTCGGGCGGCACCCCCCTCGTCAGCTC
GCAACCCTAGTACCCCCCGGAGCTGTGACCACTATGATAGTTCGAAACTT
TCGTCACTGACCTTTGTATATCCCTGGACCAAGCTATATCTGCCATCTTT
GATCGAAGTTTTTTTTAATTGGTACCCGTAAAGAAGCCATTGCAGTGCTA
AAAATTAACATCCAACGGCGCTACATCATCGAAAGTTTTCGAGTGAAAGT
AGATCTTAGCGCTCTCGATGTATATTTACACCGCTATTGAGTAGTGCCAC
AATTTTCAAAAAACTCTGATCAAAGGTTTTGCTTGACCGGGATTGAGAAA
CTCGGTCCAGGGTATATAAAGGTCAGTGTGCTTAGGACTAAAGGCTCAGA
CTAGTTCAGTCGATTCTAAATGATTTTGAATTATATATTAATTGTTTTCC
TTCCCATCTTTTCAGCGTCTGATGGCCCAGATGATCAGACAGGGATGTAT
GTTGGAATACCAGTTGGTGCCATTGCGTTTCTTGTCGTCGTTGCAATTAT
TGGTATCTATATTAGGTATGAAACTTTACTCATAAAGTAAACTCTCTTTA
ACTCGAACATGTATAATTCGATATAATTCTCAGTTCCCAATCAAGAATAA
ACCCTCATAAAATACTTTTCTACAGTTCAAATTATTCTGTAAATTCGAAT
GTATCATTATGTCCTTTGTAGTTCGAATTAGCAAGTGTCCACTATACCAT
AGGTTTATCCCTTAACGTCTATTGTTTAAGAACAATAAAATGCTATGCAT
AATGCGACACTTGCTTATTATAAAAAATATATGCAGCATTCGAGACTACG
GTAAGCAAGGTCATGGGTTCAATCACTGACCAGGTCATCCCAAACATTCC
AAAGGGGAATACTTGCCCAGTACTTACTCTCTACCGAATGCTCAGCAATT
TAGTATACTTTTTTGCTCAGAATTTCATGTTCTATCCGATGATATTAATT
ATTTTCGTTTAATTCGACTTTGAAAAAATCGTCAATTTTTGGTGCATTTT
AGACGACGTTAGTTTTTTGACAAATAAAAACTTTTTACCAGGCCTAATTC
ACGTGCCCCCTCTCAAAAAAGTCTCAAGATCCTATCTACTTTCGAGCCAA
TCACATGCGATTGCGTCGCACGAAAAATGCTAAGGATCCTAAGGGTTGCC
CCTTACTAGATGACGCAGTCAGTTTTCTCGACGTGGTTTTGATTCGCAAA
ACTCGAGGACAATAAAAGTACTGATTAACCATTCATCTCAGTCAATCAGA
ATTAGACAATGGAAAAGCGAACCGTACTTGCCGCATAAAAGTTAGTGTAC
ATTCTCTTGAAGTTGTTTTGTGTTTTGAAGCCAAAATCCACTGGAAAAGT
GCACTTTAAAGTGCAAGGTTTGCAAGGTTTTATTTTTCAAGCAACTTTAT
GAAGAAAGCTTGAGTATTGAATAGAGGGAAGATTCTTTTGAGTTTAAAAA
AAAATATTATAATGTTGTTTACCGAGTTATGGATTTGTTTATTATGTATG
TGACAGTCAACTCAGTAAGCCTCTATTAATTTAATTTTTCTTTAATTTGA
ACTAAAATGGTCCAATCAATTTTGAAATATCGTATAAAATACTTTCCGTA
ATTCGAATCTTTCTTTAATCCGAAAAATTCTCATGGTTTTCTTTTTCAAC
TGTATTCACGATGAATTGCTTTTGATCTTAGTCCACCAATGTAAAGCTTA
ACAAAGATATTGGTTCTATTGAGCAATGTCCAGAGTGTCACTCTCAGACA
TGCAATATAAGAAGCCCATCGGTTATGGCGTGATTAGCGTTTTTTTTTAA
TTCGTGATTTTGTGATTTGAGATTTTAAAACGCGTGATTGCGTGATCGGA
GGGACCAACTCAATCAACGTGATCGTGATAGAAAGGAAATTCAACTCGTT
ATAATATGATTTGGAAATATTTTTTTTTTGCGTGATTGCATGATTTGAAA
GGTGACTGGGAGCCTCGTATTCCGGCGCATCTTTGGCTTTATCGGTTGAC
TAGCTAACTCTTACTTCACTTTCGATCAAAATATTTTCAGCAGAAACTCA
TAAATTAACGAATCTCCAATATTCATGAATCATTACTAACGAGAGGAAAT
ATTTATTATTAAACGGACTTATACAGTCTTCAATTAAAGTTTTTACCAAG
TCACTTGAAGTATAAAGAACTGAAAGCCCGAGATTAGACATAAGAACATG
CAAGAATGATGAAGACAAGTCAAGGCAGTTTGTATACATTTGTACGTTCA
TTTGTTGCACAAAATGAGTAAGTTTATCTTCGTTGCATTTTTTTTTTTTT
TTTTTTTCGTGATACTGTAGGACTTCATATACACGCTTTTTTGTGTAAGA
ATAGTGTACTTTGGATGAGGGGCAAGTATTCTTAAGAAAGTGCCAAAATT
GAGGGTGAAATATTCTTAACGTATTCTTACTTTTTTAGACTTGACTTGAA
TTTATCTCTAACAAAGGGAGCAGTTTTTTCTGTTAACCAAATAGAAAATG
ACTGTATTCCTATCAAATTCTGTGAAATTCACCTTAGAGGGTATTCTTAG
GGTATTCTTAAGATTTGGCCAATTTTCACCCTTTAGAAGATATTCTTATA
AAAAAAGCGTGTATTTGACATTGGTTGATCTTGGTGCATATGGCCTAGAC
CTCAGGAGGGTTGTTCAAGCTTCGTTCGGCTTTAAAACAATTTTTTTTTC
ATTTTTAGACGACGTCATATTGAAGAAGGTTTGGAGCAAAATGAAATGGT
AAGAATAATGGTTACTTTTTATAGAACTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052820-exon-scaffold_220-1575043694:18043..18128 | TCONS_00052820-exon-scaffold_220-1575043694:18043..18128 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1575043694:17739..17922 | TCONS_00052820-exon-scaffold_220-1575043694:17739..17922 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1575043694:14764..14863 | TCONS_00052820-exon-scaffold_220-1575043694:14764..14863 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1575043694:12498..12570 | TCONS_00052820-exon-scaffold_220-1575043694:12498..12570 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1510915933:18043..18128 | TCONS_00052820-exon-scaffold_220-1510915933:18043..18128 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1510915933:17739..17922 | TCONS_00052820-exon-scaffold_220-1510915933:17739..17922 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1510915933:14764..14863 | TCONS_00052820-exon-scaffold_220-1510915933:14764..14863 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1510915933:12498..12570 | TCONS_00052820-exon-scaffold_220-1510915933:12498..12570 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1491911889:18043..18128 | TCONS_00052820-exon-scaffold_220-1491911889:18043..18128 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1491911889:17739..17922 | TCONS_00052820-exon-scaffold_220-1491911889:17739..17922 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1491911889:14764..14863 | TCONS_00052820-exon-scaffold_220-1491911889:14764..14863 | Clytia hemisphaerica | exon |
| TCONS_00052820-exon-scaffold_220-1491911889:12498..12570 | TCONS_00052820-exon-scaffold_220-1491911889:12498..12570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:12498..18128 - |
Blast
The following BLAST results are available for this feature:
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