TCONS_00052798 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052798
Unique NameTCONS_00052798
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052798 ID=TCONS_00052798|Name=TCONS_00052798|organism=Clytia hemisphaerica|type=transcript|length=594bp
tagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTG
ATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaagg
aaaacttcaaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTG
GagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTC
GGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGAT
ACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGA
ATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACT
GAAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCG
TCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATG
TAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTG
TATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGAC
AGGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACACCATTAC
Run BLAST on NCBI

transcript from alignment at scaffold_220:63898..71647+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052798 ID=TCONS_00052798|Name=TCONS_00052798|organism=Clytia hemisphaerica|type=transcript|length=7750bp|location=Sequence derived from alignment at scaffold_220:63898..71647+ (Clytia hemisphaerica)
tagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTG ATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaagg aaaacttcaaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTG GagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTC GGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGAT ACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGA ATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACT GAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataaga acaagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTA TAACCCTCAAATTgctcttatcctgttcttattctTTTGACAATATTAAT GAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCAT TCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGG AATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGAT CGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGA CTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATG GAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACG GTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAAT CGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGA TTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTA CCAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatcttata taaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCA CCATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcgatct ttcgcctCACCGTTTCGTGCCATTTAGgttttttgattggttgaacaaAT TTTGGTACCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGA cagcgcattattttgcttcacctgccgttgcttgggaaatacagagtagc tctatttAGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACAT GCAATCCTCAAGTAAATTAAATGAcgacaaaaacaattttttcactaaCA CTACTGTcttgttttttacattttaaacttatatttgcaatattcatgac gtaatgttttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCC GTATGAAACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACA TGTAACACCATTACACTATGCTATGCAACAAAACCACAAAGAGtgcatca aaattttgaaaggatcGTCATCCATGGTACAGAATAATGATGAGATGGCT TGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGC TCAAGAAGGTTGGTAACAAAATAACTAGAACACCCTTTACAGGGATGAGG TTTCCGCATCTCGTCTGGGAAGGATATAGTTTAAATGTCAGACTTTCTGC TTTGTCTTCGTTTGATGTAACGGAAGTAACAGAAAAAAGTCGACgggaaa aatcttgaaaaaggcTAAGTAGTAAAGTCATTGTATTAACGTTAAACTAA AGAAACCCTCGCATCCATTCGCTTTAGACAGGATCAATCTTCGTCAAAAA TAAGGAAGGCAAggcaaaaaaccttttaaatcAGACCTTAGTCCTAGAAT TACAAAACAATGTccatgatgataaaacaattaCATGTGAGATCGCTGGA TATAAAACTTTCTTGTTTGCGCACCCAGTAATTTCTCAATCCAAGTTTGC TTTGGCTATTATTGAGTTTGGGCCCCCAAGTGGTTTTCAtgatgacgtga tagggacttttttgcagcgcggttacgtgatttggaaatttgttcCTCGT GATTGCGTGACGAGGTTAAAACGATCGTGATTTAAAAGATAtttgagccg tgatacgtgatttagattttttcaaagggatgctgattttttgctgattt gcgtgatcgtgattgaagacaaaaaattgcgcgatatcgtgatcagagtt accgctgggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccagcctgccccaaagtttta gcctcgttttggcaaaaactcgtgaccacgtccttaaaaatgaaaatttt caaaaatgagaaaaaacacctccagatattcacccaaggaacaagtgtgc caaatttcaaccaaacccgatcatttttgaagtcttcagcctgccccaaa gttttagcctcgttttggcgaaaactcgtgaccgcgcccttgaaaatgga aattttgaaaaaatgagaaaaaacacccccagatattcacccaaaaAACA AGTATGCCAGATTTCAACTAAacccgatcatttttgaagtctccagcctg ccccaaagttttagcctcgttttggcgaaaactcgtgaccacgcccttaa aaatgaaaatttttaaaaaatgaaaaaaacacccccagatattcatccaa ggaacaagtgtaccaaatttcaaccaaatccgatcatttttgaagtctcc agcctgccccaaagttttagcctcgttttggcgaaaactcgtgaccacgc ccttaaaaatggaAATTNNNNNNNNNNNNGAAAAAAcatccccagatatt cacccaaggaacaagtgtgccaaatttcagccaaacctgatcatttttga agtctccagcctgccccaaagttttcggacagacatacatacacacacac acacacacacacacacacatacattgtcagattctagctcaactgaagtt gagaataaaaaaCGATTCGTTTTCCTTTCCTTTTTCTAGCTCTCATCAAC AAGAGTATATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAA TTATTTAGACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCG AAGCACTCAATACTATTATTACAGCTTCACAACACGGGCAAACTGATTAT ATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGA AGGCAACACACCGCTGCATTTCGCTTCAAGGTAAGATTCATGANCGATTA TATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAG AAGGCAACACACCGCTACATTTCGCTTCAAGGTAAGATTCATTCATAtct attcatgacgtaatgtttctgaattttgaatttcttttctccAGTCTAAA TTTGTCACTACTGGCAAAAGCCGGAgtgtttccgtagaaaacattacata ACGAATTCAAAGAAGTCACAGTTTAGCACACGTTGTTatttcaacattca tctaacgtgCACAGGACGTCATGGCGTTTTTTACTTATTTAAAATCTGGA CTAGTGTTTAAAGACACTCTACAACTCGAATCCTTCCATAAATTGTGTAC TTCCTGCTCAAAACGCCAACTTGGTAACTATTACTCGAAGTCAACGCTCG AAAAAGCGTCCCCTGTTTTGTCCCCACTCTAGCTTTAAAGAGGGGGGATC GTGTCAAATTAGATCTGATCTGACTTGAAATTATATTCTGCTTTTCACCT TTTCAGATACGGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAG CTGACTTGGACAAATTGAATCAAGANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGCTGCAAAATCGCATCTC GCTAGaagaatttcccttttttggcTTAAGTTTGAAGTGATATTGGGATA TTTCTCTTCAAATTCCCCTCAGCGAAAATTATCCTGTAATTAATCAGGAA CAACGACTCCCCAAATAGGGCGTGACTGCGCTTAAGGGATACATGGGTTT TATTTCACATTATCCTTTAAGCATTGAGGATTACAGgcgtcaaaattatt tttttaaacagtaAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgat tttttaagcctaaaaaagccttTCCTTTGAACTACAGTAAAAGGCAACAT TGTAAGTTTAGAAgtatttttgtgacttttttaaGAGATAACATGTAGGA AAATGTAAATATAAAGGGAAGAGAAAATacgtaaaaaatattttggttgc tATGTAAAAACTTTCTTACTTGCTTCAAGATAAACATCAAAAAACCTTTT GGGACTACACTTTTACACTTTATAAGGTTCAAAAAAGGTTCTAAAATGCC CTCTTTGGTATGGTGTATGTAACGTTTGCAAAGTTGTCTCACCTTTTCAT TCTTCAATTTATTTCAAGCTGTTTTtgtgttgtatttttttttgttctcg ttttagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGG TTGATAACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaaga aaggaaaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGA TTTGGagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCC GTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACC TGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGG TTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAAT AACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttat aagaacaagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGC GCTATAACCCTCAAATTgctcttatcctgttcttattctTTTGACAATAT TAAGGAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTT TCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAA GCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGA AGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATG ATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCG AATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAG TACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGC GAATCGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGAT TTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTT GTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatct tatataaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAA TCCACCATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcg atctttcgcctCACCGTTTCGTGCCAAACTGTGACCTACTCTGGCCTACT TTACTTCCAACAAAGAcggcgcattattttgcttcacctgccgtTGCTTG CGAAATACAGAGTAGCTATATTTAGTGTTTTATGTAAGATATCTATGGTG TATAAAATAACAACATGCAATCCTCAAGTAAATTGAATGAcgacaaaaac aattttttcactaaCACTACTGTCTTNAAGAAACCAAGAAAATATTCTAT AGAAGGAAAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTC GCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGAT ATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTA AGAAGATTctatctttttataagaacaagaaaatttttcttgagGATCGG CTCTTCTACTTTTTTTTTGCGCTATAACCCTCAAATTGCTCTTATCCTGT CCTTATTCTTTTGACAATATTAAGGAACTAAAGGCTTTTAACCAATTTCT ACTACTTTGACcctcaattttcattcattgcaGTTTGTCTGCGTTACATT TGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACAC GGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGA TACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATG GCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTC TAAGGGTTTTAAAAATACAGTACGGTCCTACGTCACTACAGTAACCAACC TGGGTTGAGCACCCGTTTGCGAATCGAGATAAAAGACAACAACATTCAAT TCTCAAAAGCCCTCCTAGATTTGAGTTTTCGATGCCGTCGTTGTCAAAAA GAATTTGTCTTGTATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACA GGCGTataccacagatatcttatataaaacactagacaGAGCTACTCCGT CCCTAGCTGAAGCAGAATAATCCACCATCTTTAAtaagtagaccatagtt cggtGTTGGCaattttatcgatctttcgcctCACCGTTTCGTGCCAAACT GTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcggcgcattatttt gcttcacctgccgtTGCTTGCGAAATACAGAGTAGCTATATTTAGTGTTT TATGTAAGATATCTATGGTGTATAAAATAACAACATGCAATCCTCAAGTA AATTGAATGAcgacaaaaacaattttttcactaaCACTACTGTCtagttt tttacattttaaacttatatttgcaatattcatgacgtaatgttttatac tgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGTATGAAACATTAC ATCATGTATTTTATGAATTTACCTATAGGTCCAACATGTAACACCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033370XLOC_033370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052798-exon-scaffold_220-1491911889:63898..64270TCONS_00052798-exon-scaffold_220-1491911889:63898..64270Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1510915933:63898..64270TCONS_00052798-exon-scaffold_220-1510915933:63898..64270Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1575043694:63898..64270TCONS_00052798-exon-scaffold_220-1575043694:63898..64270Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1491911889:64457..64655TCONS_00052798-exon-scaffold_220-1491911889:64457..64655Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1510915933:64457..64655TCONS_00052798-exon-scaffold_220-1510915933:64457..64655Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1575043694:64457..64655TCONS_00052798-exon-scaffold_220-1575043694:64457..64655Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1491911889:71626..71647TCONS_00052798-exon-scaffold_220-1491911889:71626..71647Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1510915933:71626..71647TCONS_00052798-exon-scaffold_220-1510915933:71626..71647Clytia hemisphaericaexon
TCONS_00052798-exon-scaffold_220-1575043694:71626..71647TCONS_00052798-exon-scaffold_220-1575043694:71626..71647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:63898..71647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0.00732368 0 0 0.0407967 0 0.0969075 0.240678 0 0.151676 1.11524 0.152718 0.0523258 0 0 0.139974 0 0 0.101275 0.635764 0.611438 0 31.7444 18.1009 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052798 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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