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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052797 ID=TCONS_00052797|Name=TCONS_00052797|organism=Clytia hemisphaerica|type=transcript|length=594bp
tagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTG
ATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaagg
aaaacttcaaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTG
GagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTC
GGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGAT
ACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGA
ATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACT
GAAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCG
TCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATG
TAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTG
TATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGAC
AGGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACACCATTAC Run BLAST on NCBI transcript from alignment at scaffold_220:63898..71647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052797 ID=TCONS_00052797|Name=TCONS_00052797|organism=Clytia hemisphaerica|type=transcript|length=7750bp|location=Sequence derived from alignment at scaffold_220:63898..71647+ (Clytia hemisphaerica)
tagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTG
ATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaagg
aaaacttcaaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTG
GagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTC
GGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGAT
ACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGA
ATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACT
GAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataaga
acaagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTA
TAACCCTCAAATTgctcttatcctgttcttattctTTTGACAATATTAAT
GAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCAT
TCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGG
AATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGAT
CGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGA
CTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATG
GAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACG
GTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAAT
CGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGA
TTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTA
CCAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatcttata
taaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCA
CCATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcgatct
ttcgcctCACCGTTTCGTGCCATTTAGgttttttgattggttgaacaaAT
TTTGGTACCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGA
cagcgcattattttgcttcacctgccgttgcttgggaaatacagagtagc
tctatttAGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACAT
GCAATCCTCAAGTAAATTAAATGAcgacaaaaacaattttttcactaaCA
CTACTGTcttgttttttacattttaaacttatatttgcaatattcatgac
gtaatgttttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCC
GTATGAAACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACA
TGTAACACCATTACACTATGCTATGCAACAAAACCACAAAGAGtgcatca
aaattttgaaaggatcGTCATCCATGGTACAGAATAATGATGAGATGGCT
TGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGC
TCAAGAAGGTTGGTAACAAAATAACTAGAACACCCTTTACAGGGATGAGG
TTTCCGCATCTCGTCTGGGAAGGATATAGTTTAAATGTCAGACTTTCTGC
TTTGTCTTCGTTTGATGTAACGGAAGTAACAGAAAAAAGTCGACgggaaa
aatcttgaaaaaggcTAAGTAGTAAAGTCATTGTATTAACGTTAAACTAA
AGAAACCCTCGCATCCATTCGCTTTAGACAGGATCAATCTTCGTCAAAAA
TAAGGAAGGCAAggcaaaaaaccttttaaatcAGACCTTAGTCCTAGAAT
TACAAAACAATGTccatgatgataaaacaattaCATGTGAGATCGCTGGA
TATAAAACTTTCTTGTTTGCGCACCCAGTAATTTCTCAATCCAAGTTTGC
TTTGGCTATTATTGAGTTTGGGCCCCCAAGTGGTTTTCAtgatgacgtga
tagggacttttttgcagcgcggttacgtgatttggaaatttgttcCTCGT
GATTGCGTGACGAGGTTAAAACGATCGTGATTTAAAAGATAtttgagccg
tgatacgtgatttagattttttcaaagggatgctgattttttgctgattt
gcgtgatcgtgattgaagacaaaaaattgcgcgatatcgtgatcagagtt
accgctgggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNccagcctgccccaaagtttta
gcctcgttttggcaaaaactcgtgaccacgtccttaaaaatgaaaatttt
caaaaatgagaaaaaacacctccagatattcacccaaggaacaagtgtgc
caaatttcaaccaaacccgatcatttttgaagtcttcagcctgccccaaa
gttttagcctcgttttggcgaaaactcgtgaccgcgcccttgaaaatgga
aattttgaaaaaatgagaaaaaacacccccagatattcacccaaaaAACA
AGTATGCCAGATTTCAACTAAacccgatcatttttgaagtctccagcctg
ccccaaagttttagcctcgttttggcgaaaactcgtgaccacgcccttaa
aaatgaaaatttttaaaaaatgaaaaaaacacccccagatattcatccaa
ggaacaagtgtaccaaatttcaaccaaatccgatcatttttgaagtctcc
agcctgccccaaagttttagcctcgttttggcgaaaactcgtgaccacgc
ccttaaaaatggaAATTNNNNNNNNNNNNGAAAAAAcatccccagatatt
cacccaaggaacaagtgtgccaaatttcagccaaacctgatcatttttga
agtctccagcctgccccaaagttttcggacagacatacatacacacacac
acacacacacacacacacatacattgtcagattctagctcaactgaagtt
gagaataaaaaaCGATTCGTTTTCCTTTCCTTTTTCTAGCTCTCATCAAC
AAGAGTATATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAA
TTATTTAGACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCG
AAGCACTCAATACTATTATTACAGCTTCACAACACGGGCAAACTGATTAT
ATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGA
AGGCAACACACCGCTGCATTTCGCTTCAAGGTAAGATTCATGANCGATTA
TATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAG
AAGGCAACACACCGCTACATTTCGCTTCAAGGTAAGATTCATTCATAtct
attcatgacgtaatgtttctgaattttgaatttcttttctccAGTCTAAA
TTTGTCACTACTGGCAAAAGCCGGAgtgtttccgtagaaaacattacata
ACGAATTCAAAGAAGTCACAGTTTAGCACACGTTGTTatttcaacattca
tctaacgtgCACAGGACGTCATGGCGTTTTTTACTTATTTAAAATCTGGA
CTAGTGTTTAAAGACACTCTACAACTCGAATCCTTCCATAAATTGTGTAC
TTCCTGCTCAAAACGCCAACTTGGTAACTATTACTCGAAGTCAACGCTCG
AAAAAGCGTCCCCTGTTTTGTCCCCACTCTAGCTTTAAAGAGGGGGGATC
GTGTCAAATTAGATCTGATCTGACTTGAAATTATATTCTGCTTTTCACCT
TTTCAGATACGGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAG
CTGACTTGGACAAATTGAATCAAGANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGCTGCAAAATCGCATCTC
GCTAGaagaatttcccttttttggcTTAAGTTTGAAGTGATATTGGGATA
TTTCTCTTCAAATTCCCCTCAGCGAAAATTATCCTGTAATTAATCAGGAA
CAACGACTCCCCAAATAGGGCGTGACTGCGCTTAAGGGATACATGGGTTT
TATTTCACATTATCCTTTAAGCATTGAGGATTACAGgcgtcaaaattatt
tttttaaacagtaAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgat
tttttaagcctaaaaaagccttTCCTTTGAACTACAGTAAAAGGCAACAT
TGTAAGTTTAGAAgtatttttgtgacttttttaaGAGATAACATGTAGGA
AAATGTAAATATAAAGGGAAGAGAAAATacgtaaaaaatattttggttgc
tATGTAAAAACTTTCTTACTTGCTTCAAGATAAACATCAAAAAACCTTTT
GGGACTACACTTTTACACTTTATAAGGTTCAAAAAAGGTTCTAAAATGCC
CTCTTTGGTATGGTGTATGTAACGTTTGCAAAGTTGTCTCACCTTTTCAT
TCTTCAATTTATTTCAAGCTGTTTTtgtgttgtatttttttttgttctcg
ttttagcaaaaatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGG
TTGATAACTTGTTTTCAGTGTCAGAAGATTcagttagaaaaaaagaaaga
aaggaaaacttcaaaatggtaaaaagcTATCAATCTTGATGAAGAGTTGA
TTTGGagagaaaaacttttaacttttgGATTACGAGAGGTACAAAATGCC
GTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGAAAAGATGAAGACC
TGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGG
TTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAAT
AACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctatctttttat
aagaacaagaaaatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGC
GCTATAACCCTCAAATTgctcttatcctgttcttattctTTTGACAATAT
TAAGGAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTT
TCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAA
GCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGA
AGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATG
ATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCG
AATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAG
TACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGC
GAATCGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGAT
TTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTT
GTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTataccacagatatct
tatataaaacactagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAA
TCCACCATCTTTAAtaagtagaccatagttcggtGTTGGCaattttatcg
atctttcgcctCACCGTTTCGTGCCAAACTGTGACCTACTCTGGCCTACT
TTACTTCCAACAAAGAcggcgcattattttgcttcacctgccgtTGCTTG
CGAAATACAGAGTAGCTATATTTAGTGTTTTATGTAAGATATCTATGGTG
TATAAAATAACAACATGCAATCCTCAAGTAAATTGAATGAcgacaaaaac
aattttttcactaaCACTACTGTCTTNAAGAAACCAAGAAAATATTCTAT
AGAAGGAAAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTC
GCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGAT
ATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTA
AGAAGATTctatctttttataagaacaagaaaatttttcttgagGATCGG
CTCTTCTACTTTTTTTTTGCGCTATAACCCTCAAATTGCTCTTATCCTGT
CCTTATTCTTTTGACAATATTAAGGAACTAAAGGCTTTTAACCAATTTCT
ACTACTTTGACcctcaattttcattcattgcaGTTTGTCTGCGTTACATT
TGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACAC
GGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGA
TACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATG
GCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTC
TAAGGGTTTTAAAAATACAGTACGGTCCTACGTCACTACAGTAACCAACC
TGGGTTGAGCACCCGTTTGCGAATCGAGATAAAAGACAACAACATTCAAT
TCTCAAAAGCCCTCCTAGATTTGAGTTTTCGATGCCGTCGTTGTCAAAAA
GAATTTGTCTTGTATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACA
GGCGTataccacagatatcttatataaaacactagacaGAGCTACTCCGT
CCCTAGCTGAAGCAGAATAATCCACCATCTTTAAtaagtagaccatagtt
cggtGTTGGCaattttatcgatctttcgcctCACCGTTTCGTGCCAAACT
GTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcggcgcattatttt
gcttcacctgccgtTGCTTGCGAAATACAGAGTAGCTATATTTAGTGTTT
TATGTAAGATATCTATGGTGTATAAAATAACAACATGCAATCCTCAAGTA
AATTGAATGAcgacaaaaacaattttttcactaaCACTACTGTCtagttt
tttacattttaaacttatatttgcaatattcatgacgtaatgttttatac
tgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGTATGAAACATTAC
ATCATGTATTTTATGAATTTACCTATAGGTCCAACATGTAACACCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052797-exon-scaffold_220-1491911889:63898..64270 | TCONS_00052797-exon-scaffold_220-1491911889:63898..64270 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1510915933:63898..64270 | TCONS_00052797-exon-scaffold_220-1510915933:63898..64270 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1575043694:63898..64270 | TCONS_00052797-exon-scaffold_220-1575043694:63898..64270 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1491911889:69611..69809 | TCONS_00052797-exon-scaffold_220-1491911889:69611..69809 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1510915933:69611..69809 | TCONS_00052797-exon-scaffold_220-1510915933:69611..69809 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1575043694:69611..69809 | TCONS_00052797-exon-scaffold_220-1575043694:69611..69809 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1491911889:71626..71647 | TCONS_00052797-exon-scaffold_220-1491911889:71626..71647 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1510915933:71626..71647 | TCONS_00052797-exon-scaffold_220-1510915933:71626..71647 | Clytia hemisphaerica | exon |
| TCONS_00052797-exon-scaffold_220-1575043694:71626..71647 | TCONS_00052797-exon-scaffold_220-1575043694:71626..71647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:63898..71647 + |
Blast
The following BLAST results are available for this feature:
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