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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052796 ID=TCONS_00052796|Name=TCONS_00052796|organism=Clytia hemisphaerica|type=transcript|length=706bp
AAAATGCCCTTTTTGGAATGGTGCATATGTAACGTTTGCAAAGTTGTCTC
ACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTTgtgttgtatttttt
ttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaagta
aaTTGTGGGTTGATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataa
aaaaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTCATGA
AGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAGGTAC
AAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGA
TGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAA
CAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTC
AATGAAATAACTGAAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTTACA
TTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAAC
ACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCAC
GATACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCA
TGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACAC
CATTAC Run BLAST on NCBI transcript from alignment at scaffold_220:63786..71647+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052796 ID=TCONS_00052796|Name=TCONS_00052796|organism=Clytia hemisphaerica|type=transcript|length=7862bp|location=Sequence derived from alignment at scaffold_220:63786..71647+ (Clytia hemisphaerica)
AAAATGCCCTTTTTGGAATGGTGCATATGTAACGTTTGCAAAGTTGTCTC
ACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTTgtgttgtatttttt
ttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaagta
aaTTGTGGGTTGATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataa
aaaaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTCATGA
AGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAGGTAC
AAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGA
TGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAA
CAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTC
AATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctat
ctttttataagaacaagaaaatttttcttgagGATCGGCTCTTCTACTTT
TTTTTTGCGCTATAACCCTCAAATTgctcttatcctgttcttattctTTT
GACAATATTAATGAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACC
CTCAACTTTCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTC
ACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTA
GACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTA
TGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAG
GTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAA
AAATACAGTACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCAC
CCGTTTGCGAATCGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCC
TCCTAGATTTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTG
TATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTataccac
agatatcttatataaaacactagacaGAGCTACTCCGTCCCTAGCTGAAG
CAGAATAATCCACCATCTTTAAtaagtagaccatagttcggtGTTGGCaa
ttttatcgatctttcgcctCACCGTTTCGTGCCATTTAGgttttttgatt
ggttgaacaaATTTTGGTACCAAACTGTGACCTACTCTGGCCTACTTTAC
TTCCAACAAAGAcagcgcattattttgcttcacctgccgttgcttgggaa
atacagagtagctctatttAGTGTTTTATGTAAGATATCTATGGTGTATA
AAATAACAACATGCAATCCTCAAGTAAATTAAATGAcgacaaaaacaatt
ttttcactaaCACTACTGTcttgttttttacattttaaacttatatttgc
aatattcatgacgtaatgttttatactgAAGCACCGAAAAAGAACGAGTG
TTTGCCACTTCCGTATGAAACATTACATCATGTATTTTATGAATTTACCT
ATAGGTCCAACATGTAACACCATTACACTATGCTATGCAACAAAACCACA
AAGAGtgcatcaaaattttgaaaggatcGTCATCCATGGTACAGAATAAT
GATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGAT
CTCACTAGCTGCTCAAGAAGGTTGGTAACAAAATAACTAGAACACCCTTT
ACAGGGATGAGGTTTCCGCATCTCGTCTGGGAAGGATATAGTTTAAATGT
CAGACTTTCTGCTTTGTCTTCGTTTGATGTAACGGAAGTAACAGAAAAAA
GTCGACgggaaaaatcttgaaaaaggcTAAGTAGTAAAGTCATTGTATTA
ACGTTAAACTAAAGAAACCCTCGCATCCATTCGCTTTAGACAGGATCAAT
CTTCGTCAAAAATAAGGAAGGCAAggcaaaaaaccttttaaatcAGACCT
TAGTCCTAGAATTACAAAACAATGTccatgatgataaaacaattaCATGT
GAGATCGCTGGATATAAAACTTTCTTGTTTGCGCACCCAGTAATTTCTCA
ATCCAAGTTTGCTTTGGCTATTATTGAGTTTGGGCCCCCAAGTGGTTTTC
Atgatgacgtgatagggacttttttgcagcgcggttacgtgatttggaaa
tttgttcCTCGTGATTGCGTGACGAGGTTAAAACGATCGTGATTTAAAAG
ATAtttgagccgtgatacgtgatttagattttttcaaagggatgctgatt
ttttgctgatttgcgtgatcgtgattgaagacaaaaaattgcgcgatatc
gtgatcagagttaccgctgggggggggggggNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccagcctgc
cccaaagttttagcctcgttttggcaaaaactcgtgaccacgtccttaaa
aatgaaaattttcaaaaatgagaaaaaacacctccagatattcacccaag
gaacaagtgtgccaaatttcaaccaaacccgatcatttttgaagtcttca
gcctgccccaaagttttagcctcgttttggcgaaaactcgtgaccgcgcc
cttgaaaatggaaattttgaaaaaatgagaaaaaacacccccagatattc
acccaaaaAACAAGTATGCCAGATTTCAACTAAacccgatcatttttgaa
gtctccagcctgccccaaagttttagcctcgttttggcgaaaactcgtga
ccacgcccttaaaaatgaaaatttttaaaaaatgaaaaaaacacccccag
atattcatccaaggaacaagtgtaccaaatttcaaccaaatccgatcatt
tttgaagtctccagcctgccccaaagttttagcctcgttttggcgaaaac
tcgtgaccacgcccttaaaaatggaAATTNNNNNNNNNNNNGAAAAAAca
tccccagatattcacccaaggaacaagtgtgccaaatttcagccaaacct
gatcatttttgaagtctccagcctgccccaaagttttcggacagacatac
atacacacacacacacacacacacacacacatacattgtcagattctagc
tcaactgaagttgagaataaaaaaCGATTCGTTTTCCTTTCCTTTTTCTA
GCTCTCATCAACAAGAGTATATCGAATTGGTTGAAAAACTCTGCACTGAC
CGGTCATACCAATTATTTAGACAAAATTAAAACAGCTATCAACAGAAAGT
TTGGTTCCCGCGAAGCACTCAATACTATTATTACAGCTTCACAACACGGG
CAAACTGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTC
GACAAATAAAGAAGGCAACACACCGCTGCATTTCGCTTCAAGGTAAGATT
CATGANCGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCAACT
CGACAAATAAAGAAGGCAACACACCGCTACATTTCGCTTCAAGGTAAGAT
TCATTCATAtctattcatgacgtaatgtttctgaattttgaatttctttt
ctccAGTCTAAATTTGTCACTACTGGCAAAAGCCGGAgtgtttccgtaga
aaacattacataACGAATTCAAAGAAGTCACAGTTTAGCACACGTTGTTa
tttcaacattcatctaacgtgCACAGGACGTCATGGCGTTTTTTACTTAT
TTAAAATCTGGACTAGTGTTTAAAGACACTCTACAACTCGAATCCTTCCA
TAAATTGTGTACTTCCTGCTCAAAACGCCAACTTGGTAACTATTACTCGA
AGTCAACGCTCGAAAAAGCGTCCCCTGTTTTGTCCCCACTCTAGCTTTAA
AGAGGGGGGATCGTGTCAAATTAGATCTGATCTGACTTGAAATTATATTC
TGCTTTTCACCTTTTCAGATACGGACACGAAGACACAATAAAGCTTCTCG
TTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGCTGCA
AAATCGCATCTCGCTAGaagaatttcccttttttggcTTAAGTTTGAAGT
GATATTGGGATATTTCTCTTCAAATTCCCCTCAGCGAAAATTATCCTGTA
ATTAATCAGGAACAACGACTCCCCAAATAGGGCGTGACTGCGCTTAAGGG
ATACATGGGTTTTATTTCACATTATCCTTTAAGCATTGAGGATTACAGgc
gtcaaaattatttttttaaacagtaAAATCTTTCACAAAGGCGATCAAGG
ATAAAGAGAgattttttaagcctaaaaaagccttTCCTTTGAACTACAGT
AAAAGGCAACATTGTAAGTTTAGAAgtatttttgtgacttttttaaGAGA
TAACATGTAGGAAAATGTAAATATAAAGGGAAGAGAAAATacgtaaaaaa
tattttggttgctATGTAAAAACTTTCTTACTTGCTTCAAGATAAACATC
AAAAAACCTTTTGGGACTACACTTTTACACTTTATAAGGTTCAAAAAAGG
TTCTAAAATGCCCTCTTTGGTATGGTGTATGTAACGTTTGCAAAGTTGTC
TCACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTtgtgttgtatttt
tttttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaa
gtaaaTTGTGGGTTGATAACTTGTTTTCAGTGTCAGAAGATTcagttaga
aaaaaagaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTG
ATGAAGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAG
GTACAAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGAA
AAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGC
AAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGA
TCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATT
ctatctttttataagaacaagaaaatttttcttgagGATCGGCTCTTCTA
CTTTTTTTTTGCGCTATAACCCTCAAATTgctcttatcctgttcttattc
tTTTGACAATATTAAGGAACTAAAGGCTTTTTACCTATTTCTACTGCTTT
GACCCTCAACTTTCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCG
CGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTA
TGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGT
TGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCG
ACAGGTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTT
TTAAAAATACAGTACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGA
GCACCCGTTTGCGAATCGAGATAAAAGACAACAACATTCAATTCTCAAAA
GCCCTCCTAGATTTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGT
CTTGTATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTata
ccacagatatcttatataaaacactagacaGAGCTACTCCGTCCCTAGCT
GAAGCAGAATAATCCACCATCTTTAAtaagtagaccatagttcggtGTTG
GCaattttatcgatctttcgcctCACCGTTTCGTGCCAAACTGTGACCTA
CTCTGGCCTACTTTACTTCCAACAAAGAcggcgcattattttgcttcacc
tgccgtTGCTTGCGAAATACAGAGTAGCTATATTTAGTGTTTTATGTAAG
ATATCTATGGTGTATAAAATAACAACATGCAATCCTCAAGTAAATTGAAT
GAcgacaaaaacaattttttcactaaCACTACTGTCTTNAAGAAACCAAG
AAAATATTCTATAGAAGGAAAAGATGAAGACCTGATACGGAACGATTTAT
ACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGT
CAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGG
CCAACAAGGGTAAGAAGATTctatctttttataagaacaagaaaattttt
cttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCTCAAATTG
CTCTTATCCTGTCCTTATTCTTTTGACAATATTAAGGAACTAAAGGCTTT
TAACCAATTTCTACTACTTTGACcctcaattttcattcattgcaGTTTGT
CTGCGTTACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATC
TTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCG
ACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTGAAATTGC
TTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTAAAC
ACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTACGTCACTA
CAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATAAAAGACA
ACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGAGTTTTCGATGCCGT
CGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCCGCACCGC
TAAGTACTGACAGGCGTataccacagatatcttatataaaacactagaca
GAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTTTAAtaag
tagaccatagttcggtGTTGGCaattttatcgatctttcgcctCACCGTT
TCGTGCCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcg
gcgcattattttgcttcacctgccgtTGCTTGCGAAATACAGAGTAGCTA
TATTTAGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACATGC
AATCCTCAAGTAAATTGAATGAcgacaaaaacaattttttcactaaCACT
ACTGTCtagttttttacattttaaacttatatttgcaatattcatgacgt
aatgttttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGT
ATGAAACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACATG
TAACACCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052796-exon-scaffold_220-1491911889:63786..64270 | TCONS_00052796-exon-scaffold_220-1491911889:63786..64270 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1510915933:63786..64270 | TCONS_00052796-exon-scaffold_220-1510915933:63786..64270 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1575043694:63786..64270 | TCONS_00052796-exon-scaffold_220-1575043694:63786..64270 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1491911889:70731..70929 | TCONS_00052796-exon-scaffold_220-1491911889:70731..70929 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1510915933:70731..70929 | TCONS_00052796-exon-scaffold_220-1510915933:70731..70929 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1575043694:70731..70929 | TCONS_00052796-exon-scaffold_220-1575043694:70731..70929 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1491911889:71626..71647 | TCONS_00052796-exon-scaffold_220-1491911889:71626..71647 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1510915933:71626..71647 | TCONS_00052796-exon-scaffold_220-1510915933:71626..71647 | Clytia hemisphaerica | exon |
| TCONS_00052796-exon-scaffold_220-1575043694:71626..71647 | TCONS_00052796-exon-scaffold_220-1575043694:71626..71647 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_220 | supercontig | scaffold_220:63786..71647 + |
Blast
The following BLAST results are available for this feature:
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