TCONS_00052796 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052796
Unique NameTCONS_00052796
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052796 ID=TCONS_00052796|Name=TCONS_00052796|organism=Clytia hemisphaerica|type=transcript|length=706bp
AAAATGCCCTTTTTGGAATGGTGCATATGTAACGTTTGCAAAGTTGTCTC
ACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTTgtgttgtatttttt
ttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaagta
aaTTGTGGGTTGATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataa
aaaaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTCATGA
AGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAGGTAC
AAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGA
TGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAA
CAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTC
AATGAAATAACTGAAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTTACA
TTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAAC
ACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCAC
GATACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCA
TGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACAC
CATTAC
Run BLAST on NCBI

transcript from alignment at scaffold_220:63786..71647+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052796 ID=TCONS_00052796|Name=TCONS_00052796|organism=Clytia hemisphaerica|type=transcript|length=7862bp|location=Sequence derived from alignment at scaffold_220:63786..71647+ (Clytia hemisphaerica)
AAAATGCCCTTTTTGGAATGGTGCATATGTAACGTTTGCAAAGTTGTCTC ACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTTgtgttgtatttttt ttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaagta aaTTGTGGGTTGATAACTTGTTATAAGTGTCAGAAGTTTCAgttagataa aaaaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTCATGA AGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAGGTAC AAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGA TGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAA CAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTC AATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATTctat ctttttataagaacaagaaaatttttcttgagGATCGGCTCTTCTACTTT TTTTTTGCGCTATAACCCTCAAATTgctcttatcctgttcttattctTTT GACAATATTAATGAACTAAAGGCTTTTTACCTATTTCTACTGCTTTGACC CTCAACTTTCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCGCGTC ACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTA GACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTA TGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAG GTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTTTTAA AAATACAGTACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGAGCAC CCGTTTGCGAATCGAGATAAAAGACAACAACATTCAATTCTCAAAAGCCC TCCTAGATTTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGTCTTG TATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTataccac agatatcttatataaaacactagacaGAGCTACTCCGTCCCTAGCTGAAG CAGAATAATCCACCATCTTTAAtaagtagaccatagttcggtGTTGGCaa ttttatcgatctttcgcctCACCGTTTCGTGCCATTTAGgttttttgatt ggttgaacaaATTTTGGTACCAAACTGTGACCTACTCTGGCCTACTTTAC TTCCAACAAAGAcagcgcattattttgcttcacctgccgttgcttgggaa atacagagtagctctatttAGTGTTTTATGTAAGATATCTATGGTGTATA AAATAACAACATGCAATCCTCAAGTAAATTAAATGAcgacaaaaacaatt ttttcactaaCACTACTGTcttgttttttacattttaaacttatatttgc aatattcatgacgtaatgttttatactgAAGCACCGAAAAAGAACGAGTG TTTGCCACTTCCGTATGAAACATTACATCATGTATTTTATGAATTTACCT ATAGGTCCAACATGTAACACCATTACACTATGCTATGCAACAAAACCACA AAGAGtgcatcaaaattttgaaaggatcGTCATCCATGGTACAGAATAAT GATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGAT CTCACTAGCTGCTCAAGAAGGTTGGTAACAAAATAACTAGAACACCCTTT ACAGGGATGAGGTTTCCGCATCTCGTCTGGGAAGGATATAGTTTAAATGT CAGACTTTCTGCTTTGTCTTCGTTTGATGTAACGGAAGTAACAGAAAAAA GTCGACgggaaaaatcttgaaaaaggcTAAGTAGTAAAGTCATTGTATTA ACGTTAAACTAAAGAAACCCTCGCATCCATTCGCTTTAGACAGGATCAAT CTTCGTCAAAAATAAGGAAGGCAAggcaaaaaaccttttaaatcAGACCT TAGTCCTAGAATTACAAAACAATGTccatgatgataaaacaattaCATGT GAGATCGCTGGATATAAAACTTTCTTGTTTGCGCACCCAGTAATTTCTCA ATCCAAGTTTGCTTTGGCTATTATTGAGTTTGGGCCCCCAAGTGGTTTTC Atgatgacgtgatagggacttttttgcagcgcggttacgtgatttggaaa tttgttcCTCGTGATTGCGTGACGAGGTTAAAACGATCGTGATTTAAAAG ATAtttgagccgtgatacgtgatttagattttttcaaagggatgctgatt ttttgctgatttgcgtgatcgtgattgaagacaaaaaattgcgcgatatc gtgatcagagttaccgctgggggggggggggNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccagcctgc cccaaagttttagcctcgttttggcaaaaactcgtgaccacgtccttaaa aatgaaaattttcaaaaatgagaaaaaacacctccagatattcacccaag gaacaagtgtgccaaatttcaaccaaacccgatcatttttgaagtcttca gcctgccccaaagttttagcctcgttttggcgaaaactcgtgaccgcgcc cttgaaaatggaaattttgaaaaaatgagaaaaaacacccccagatattc acccaaaaAACAAGTATGCCAGATTTCAACTAAacccgatcatttttgaa gtctccagcctgccccaaagttttagcctcgttttggcgaaaactcgtga ccacgcccttaaaaatgaaaatttttaaaaaatgaaaaaaacacccccag atattcatccaaggaacaagtgtaccaaatttcaaccaaatccgatcatt tttgaagtctccagcctgccccaaagttttagcctcgttttggcgaaaac tcgtgaccacgcccttaaaaatggaAATTNNNNNNNNNNNNGAAAAAAca tccccagatattcacccaaggaacaagtgtgccaaatttcagccaaacct gatcatttttgaagtctccagcctgccccaaagttttcggacagacatac atacacacacacacacacacacacacacacatacattgtcagattctagc tcaactgaagttgagaataaaaaaCGATTCGTTTTCCTTTCCTTTTTCTA GCTCTCATCAACAAGAGTATATCGAATTGGTTGAAAAACTCTGCACTGAC CGGTCATACCAATTATTTAGACAAAATTAAAACAGCTATCAACAGAAAGT TTGGTTCCCGCGAAGCACTCAATACTATTATTACAGCTTCACAACACGGG CAAACTGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTC GACAAATAAAGAAGGCAACACACCGCTGCATTTCGCTTCAAGGTAAGATT CATGANCGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCAACT CGACAAATAAAGAAGGCAACACACCGCTACATTTCGCTTCAAGGTAAGAT TCATTCATAtctattcatgacgtaatgtttctgaattttgaatttctttt ctccAGTCTAAATTTGTCACTACTGGCAAAAGCCGGAgtgtttccgtaga aaacattacataACGAATTCAAAGAAGTCACAGTTTAGCACACGTTGTTa tttcaacattcatctaacgtgCACAGGACGTCATGGCGTTTTTTACTTAT TTAAAATCTGGACTAGTGTTTAAAGACACTCTACAACTCGAATCCTTCCA TAAATTGTGTACTTCCTGCTCAAAACGCCAACTTGGTAACTATTACTCGA AGTCAACGCTCGAAAAAGCGTCCCCTGTTTTGTCCCCACTCTAGCTTTAA AGAGGGGGGATCGTGTCAAATTAGATCTGATCTGACTTGAAATTATATTC TGCTTTTCACCTTTTCAGATACGGACACGAAGACACAATAAAGCTTCTCG TTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGANNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGGAGCTGCA AAATCGCATCTCGCTAGaagaatttcccttttttggcTTAAGTTTGAAGT GATATTGGGATATTTCTCTTCAAATTCCCCTCAGCGAAAATTATCCTGTA ATTAATCAGGAACAACGACTCCCCAAATAGGGCGTGACTGCGCTTAAGGG ATACATGGGTTTTATTTCACATTATCCTTTAAGCATTGAGGATTACAGgc gtcaaaattatttttttaaacagtaAAATCTTTCACAAAGGCGATCAAGG ATAAAGAGAgattttttaagcctaaaaaagccttTCCTTTGAACTACAGT AAAAGGCAACATTGTAAGTTTAGAAgtatttttgtgacttttttaaGAGA TAACATGTAGGAAAATGTAAATATAAAGGGAAGAGAAAATacgtaaaaaa tattttggttgctATGTAAAAACTTTCTTACTTGCTTCAAGATAAACATC AAAAAACCTTTTGGGACTACACTTTTACACTTTATAAGGTTCAAAAAAGG TTCTAAAATGCCCTCTTTGGTATGGTGTATGTAACGTTTGCAAAGTTGTC TCACCTTTTCATTCTTCAATTTATTTCAAGCTGTTTTtgtgttgtatttt tttttgttctcgttttagcaaaaatagaaaaatcaaggaaaaatacaaaa gtaaaTTGTGGGTTGATAACTTGTTTTCAGTGTCAGAAGATTcagttaga aaaaaagaaagaaaggaaaacttcaaaatggtaaaaagcTATCAATCTTG ATGAAGAGTTGATTTGGagagaaaaacttttaacttttgGATTACGAGAG GTACAAAATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGAA AAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGC AAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGA TCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGGTAAGAAGATT ctatctttttataagaacaagaaaatttttcttgagGATCGGCTCTTCTA CTTTTTTTTTGCGCTATAACCCTCAAATTgctcttatcctgttcttattc tTTTGACAATATTAAGGAACTAAAGGCTTTTTACCTATTTCTACTGCTTT GACCCTCAACTTTCATTCATTGCAGTTTGTCTGCGTCACATTTGGCTGCG CGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTA TGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGT TGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCG ACAGGTGGAGCGAATGGAAGCGAGGTAAACACTTTTTCTTTCTAAGGGTT TTAAAAATACAGTACGGTCCTACGTCACTACAGTAACCAACCTGGGTTGA GCACCCGTTTGCGAATCGAGATAAAAGACAACAACATTCAATTCTCAAAA GCCCTCCTAGATTTGATTTTTCGATGCCGTCGTTGTCAAAAAGAATTTGT CTTGTATTTTTTGTTACCAGTCCGCACCGCTAAGTACTGACAGGCGTata ccacagatatcttatataaaacactagacaGAGCTACTCCGTCCCTAGCT GAAGCAGAATAATCCACCATCTTTAAtaagtagaccatagttcggtGTTG GCaattttatcgatctttcgcctCACCGTTTCGTGCCAAACTGTGACCTA CTCTGGCCTACTTTACTTCCAACAAAGAcggcgcattattttgcttcacc tgccgtTGCTTGCGAAATACAGAGTAGCTATATTTAGTGTTTTATGTAAG ATATCTATGGTGTATAAAATAACAACATGCAATCCTCAAGTAAATTGAAT GAcgacaaaaacaattttttcactaaCACTACTGTCTTNAAGAAACCAAG AAAATATTCTATAGAAGGAAAAGATGAAGACCTGATACGGAACGATTTAT ACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGT CAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGG CCAACAAGGGTAAGAAGATTctatctttttataagaacaagaaaattttt cttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCTCAAATTG CTCTTATCCTGTCCTTATTCTTTTGACAATATTAAGGAACTAAAGGCTTT TAACCAATTTCTACTACTTTGACcctcaattttcattcattgcaGTTTGT CTGCGTTACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATC TTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCG ACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTGAAATTGC TTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTAAAC ACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTACGTCACTA CAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATAAAAGACA ACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGAGTTTTCGATGCCGT CGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCCGCACCGC TAAGTACTGACAGGCGTataccacagatatcttatataaaacactagaca GAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTTTAAtaag tagaccatagttcggtGTTGGCaattttatcgatctttcgcctCACCGTT TCGTGCCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcg gcgcattattttgcttcacctgccgtTGCTTGCGAAATACAGAGTAGCTA TATTTAGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACATGC AATCCTCAAGTAAATTGAATGAcgacaaaaacaattttttcactaaCACT ACTGTCtagttttttacattttaaacttatatttgcaatattcatgacgt aatgttttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGT ATGAAACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACATG TAACACCATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033370XLOC_033370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052796-exon-scaffold_220-1491911889:63786..64270TCONS_00052796-exon-scaffold_220-1491911889:63786..64270Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1510915933:63786..64270TCONS_00052796-exon-scaffold_220-1510915933:63786..64270Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1575043694:63786..64270TCONS_00052796-exon-scaffold_220-1575043694:63786..64270Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1491911889:70731..70929TCONS_00052796-exon-scaffold_220-1491911889:70731..70929Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1510915933:70731..70929TCONS_00052796-exon-scaffold_220-1510915933:70731..70929Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1575043694:70731..70929TCONS_00052796-exon-scaffold_220-1575043694:70731..70929Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1491911889:71626..71647TCONS_00052796-exon-scaffold_220-1491911889:71626..71647Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1510915933:71626..71647TCONS_00052796-exon-scaffold_220-1510915933:71626..71647Clytia hemisphaericaexon
TCONS_00052796-exon-scaffold_220-1575043694:71626..71647TCONS_00052796-exon-scaffold_220-1575043694:71626..71647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_220supercontigscaffold_220:63786..71647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 2.67383e-06 0 0.589639 0 0 0 2.54139 4.15661 0 0 1.40542 1.94986 8.03744 10.2233 3.82775 3.61336 0 1.5362 39.0693 23.6882 0 0 0.140816 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052796 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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