|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052794 ID=TCONS_00052794|Name=TCONS_00052794|organism=Clytia hemisphaerica|type=transcript|length=1493bp CCTTTAAGCATTGAGGATTACAGgcgtcaaaataatttttttttaacagt aAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgattttttaagccta aaaaagccttTCCTTTGAACTACAGTAAAAGGCAACATTGTAAGTTTAGA AGtatttttcgtgacttttttaagAGATAACATGtagaaaaatgtaaata taaaGGGAAGAGAAAATacgtaaaaaatattttggttgctATGTAAAAAC TTTCTTACTTGCTTCAAGATAAacatcaaaaaaacttttgggACTACACT TTTACACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAAT GGTGCATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATT TATTTCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaa aatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTT GTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaactt caaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaa aaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGA AACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAAC GATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGAT ATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATG AGAAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAAC CAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACAT AGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGAT ATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGA GCGAATGGAAGCGAGGTCCAACATGTAACACCATTACACTATGCTATGCA ACAAAACCACAAAGAGtgcatcaaaattttgaaaggatcGTCATCCATGG TACAGAATAATGATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAAT GTTTCAATGATCTCACTAGCTGCTCAAGAAGCTCTCATCAACAAGAGTAT ATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTAG ACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACTC AATACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGAA ACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACA CACCGCTACATTTCGCTTCAAGATACGGACACGAAGACACAATAAAGCTT CTCGTTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGANN Run BLAST on NCBI protein sequence of TCONS_00052794-protein >TCONS_00052794-protein ID=TCONS_00052794-protein|Name=TCONS_00052794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MPFGKKPRKYSIEGKDEDLIRNDLYEACRTGKTEWLNVILGQPEDMFDLN EITEDEKGQQGLSASHLAARHNQAECLEILLEHGAYVDIEDRFGFRPIHD TALYGYDDCLKLLLSHGASTGGANGSEVQHVTPLHYAMQQNHKECIKILK GSSSMVQNNDEMAWDMASKRGNVSMISLAAQEALINKSISNWLKNSALTG HTNYLDKIKTAINRKFGSREALNTIITASQHGQTDYIRKLIEQGVDVNST NKEGNTPLHFASRYGHEDTIKLLVDSGADLDKLNQX Run BLAST on NCBI transcript from alignment at scaffold_220:63455..68324+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052794 ID=TCONS_00052794|Name=TCONS_00052794|organism=Clytia hemisphaerica|type=transcript|length=4870bp|location=Sequence derived from alignment at scaffold_220:63455..68324+ (Clytia hemisphaerica) CCTTTAAGCATTGAGGATTACAGgcgtcaaaataatttttttttaacagt
aAAATCTTTCACAAAGGCGATCAAGGATAAAGAGAgattttttaagccta
aaaaagccttTCCTTTGAACTACAGTAAAAGGCAACATTGTAAGTTTAGA
AGtatttttcgtgacttttttaagAGATAACATGtagaaaaatgtaaata
taaaGGGAAGAGAAAATacgtaaaaaatattttggttgctATGTAAAAAC
TTTCTTACTTGCTTCAAGATAAacatcaaaaaaacttttgggACTACACT
TTTACACTTTATAAGGTCCAAAAAAGGTTCTAAAATGCCCTTTTTGGAAT
GGTGCATATGTAACGTTTGCAAAGTTGTCTCACCTTTTCATTCTTCAATT
TATTTCAAGCTGTTTTTgtgttgtattttttttgttctcgttttagcaaa
aatagaaaaatcaaggaaaaatacaaaagtaaaTTGTGGGTTGATAACTT
GTTATAAGTGTCAGAAGTTTCAgttagataaaaaaaagaaaggaaaactt
caaaatggtaaaaagcTATCAATCTTCATGAAGAGTTGATTTGGagagaa
aaacttttaacttttgGATTACGAGAGGTACAAAATGCCGTTCGGCAAGA
AACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAAC
GATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGAT
ATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATG
AGAAAGGCCAACAAGGGTAAGAAGATTctatctttttataagaacaagaa
aatttttcttgagGATCGGCTCTTCTACTTTTTTTTTGCGCTATAACCCT
CAAATTgctcttatcctgttcttattctTTTGACAATATTAATGAACTAA
AGGCTTTTTACCTATTTCTACTGCTTTGACCCTCAACTTTCATTCATTGC
AGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTT
GGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTG
GATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTG
AAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGA
GGTAAACACTTTTTCTTTCTAAGGGTTTTAAAAATACAGTACGGTCCTAC
GTCACTACAGTAACCAACCTGGGTTGAGCACCCGTTTGCGAATCGAGATA
AAAGACAACAACATTCAATTCTCAAAAGCCCTCCTAGATTTGATTTTTCG
ATGCCGTCGTTGTCAAAAAGAATTTGTCTTGTATTTTTTGTTACCAGTCC
GCACCGCTAAGTACTGACAGGCGTataccacagatatcttatataaaaca
ctagacaGAGCTACTCCGTCCCTAGCTGAAGCAGAATAATCCACCATCTT
TAAtaagtagaccatagttcggtGTTGGCaattttatcgatctttcgcct
CACCGTTTCGTGCCATTTAGgttttttgattggttgaacaaATTTTGGTA
CCAAACTGTGACCTACTCTGGCCTACTTTACTTCCAACAAAGAcagcgca
ttattttgcttcacctgccgttgcttgggaaatacagagtagctctattt
AGTGTTTTATGTAAGATATCTATGGTGTATAAAATAACAACATGCAATCC
TCAAGTAAATTAAATGAcgacaaaaacaattttttcactaaCACTACTGT
cttgttttttacattttaaacttatatttgcaatattcatgacgtaatgt
tttatactgAAGCACCGAAAAAGAACGAGTGTTTGCCACTTCCGTATGAA
ACATTACATCATGTATTTTATGAATTTACCTATAGGTCCAACATGTAACA
CCATTACACTATGCTATGCAACAAAACCACAAAGAGtgcatcaaaatttt
gaaaggatcGTCATCCATGGTACAGAATAATGATGAGATGGCTTGGGATA
TGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGCTCAAGAA
GGTTGGTAACAAAATAACTAGAACACCCTTTACAGGGATGAGGTTTCCGC
ATCTCGTCTGGGAAGGATATAGTTTAAATGTCAGACTTTCTGCTTTGTCT
TCGTTTGATGTAACGGAAGTAACAGAAAAAAGTCGACgggaaaaatcttg
aaaaaggcTAAGTAGTAAAGTCATTGTATTAACGTTAAACTAAAGAAACC
CTCGCATCCATTCGCTTTAGACAGGATCAATCTTCGTCAAAAATAAGGAA
GGCAAggcaaaaaaccttttaaatcAGACCTTAGTCCTAGAATTACAAAA
CAATGTccatgatgataaaacaattaCATGTGAGATCGCTGGATATAAAA
CTTTCTTGTTTGCGCACCCAGTAATTTCTCAATCCAAGTTTGCTTTGGCT
ATTATTGAGTTTGGGCCCCCAAGTGGTTTTCAtgatgacgtgatagggac
ttttttgcagcgcggttacgtgatttggaaatttgttcCTCGTGATTGCG
TGACGAGGTTAAAACGATCGTGATTTAAAAGATAtttgagccgtgatacg
tgatttagattttttcaaagggatgctgattttttgctgatttgcgtgat
cgtgattgaagacaaaaaattgcgcgatatcgtgatcagagttaccgctg
ggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNccagcctgccccaaagttttagcctcgt
tttggcaaaaactcgtgaccacgtccttaaaaatgaaaattttcaaaaat
gagaaaaaacacctccagatattcacccaaggaacaagtgtgccaaattt
caaccaaacccgatcatttttgaagtcttcagcctgccccaaagttttag
cctcgttttggcgaaaactcgtgaccgcgcccttgaaaatggaaattttg
aaaaaatgagaaaaaacacccccagatattcacccaaaaAACAAGTATGC
CAGATTTCAACTAAacccgatcatttttgaagtctccagcctgccccaaa
gttttagcctcgttttggcgaaaactcgtgaccacgcccttaaaaatgaa
aatttttaaaaaatgaaaaaaacacccccagatattcatccaaggaacaa
gtgtaccaaatttcaaccaaatccgatcatttttgaagtctccagcctgc
cccaaagttttagcctcgttttggcgaaaactcgtgaccacgcccttaaa
aatggaAATTNNNNNNNNNNNNGAAAAAAcatccccagatattcacccaa
ggaacaagtgtgccaaatttcagccaaacctgatcatttttgaagtctcc
agcctgccccaaagttttcggacagacatacatacacacacacacacaca
cacacacacacatacattgtcagattctagctcaactgaagttgagaata
aaaaaCGATTCGTTTTCCTTTCCTTTTTCTAGCTCTCATCAACAAGAGTA
TATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTA
GACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACT
CAATACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGA
AACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAAC
ACACCGCTGCATTTCGCTTCAAGGTAAGATTCATGANCGATTATATACGG
AAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAA
CACACCGCTACATTTCGCTTCAAGGTAAGATTCATTCATAtctattcatg
acgtaatgtttctgaattttgaatttcttttctccAGTCTAAATTTGTCA
CTACTGGCAAAAGCCGGAgtgtttccgtagaaaacattacataACGAATT
CAAAGAAGTCACAGTTTAGCACACGTTGTTatttcaacattcatctaacg
tgCACAGGACGTCATGGCGTTTTTTACTTATTTAAAATCTGGACTAGTGT
TTAAAGACACTCTACAACTCGAATCCTTCCATAAATTGTGTACTTCCTGC
TCAAAACGCCAACTTGGTAACTATTACTCGAAGTCAACGCTCGAAAAAGC
GTCCCCTGTTTTGTCCCCACTCTAGCTTTAAAGAGGGGGGATCGTGTCAA
ATTAGATCTGATCTGACTTGAAATTATATTCTGCTTTTCACCTTTTCAGA
TACGGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAGCTGACTT
GGACAAATTGAATCAAGANN Coding sequence (CDS) from alignment at scaffold_220:63455..68324+ >TCONS_00052794 ID=TCONS_00052794|Name=TCONS_00052794|organism=Clytia hemisphaerica|type=CDS|length=5148bp|location=Sequence derived from alignment at scaffold_220:63455..68324+ (Clytia hemisphaerica) ATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGA AGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAG AATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAAT GAAATAACTGAAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTCACATTT GGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACG GTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGAT ACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGG CGCATCGACAGGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACACCAT TACACTATGCTATGCAACAAAACCACAAAGAGtgcatcaaaattttgaaa ggatcGTCATCCATGGTACAGAATAATGATGAGATGGCTTGGGATATGGC TTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGCTCAAGAAGCTC TCATCAACAAGAGTATATCGAATTGGTTGAAAAACTCTGCACTGACCGGT CATACCAATTATTTAGACAAAATTAAAACAGCTATCAACAGAAAGTTTGG TTCCCGCGAAGCACTCAATACTATTATTACAGCTTCACAACACGGGCAAA CTGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACA AATAAAGAAGGCAACACACCGCTACATTTCGCTTCAAGATACGGACACGA AGACACAATAAAGCTTCTCGTTGATTCAGGAGCTGACTTGGACAAATTGA ATCAAGANATGCCGTTCGGCAAGAAACCAAGAAAATATTCTATAGAAGGC AAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGTCGCACGGG CAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGATATGTTTG ATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGTTTGTCTGCG TCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAGATCTTACT TGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATTTCGACCCA TTCACGATACAGCGTTGTATGGATATGATGACTGCTTGAAATTGCTTTTA TCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTCCAACATGT AACACCATTACACTATGCTATGCAACAAAACCACAAAGAGtgcatcaaaa ttttgaaaggatcGTCATCCATGGTACAGAATAATGATGAGATGGCTTGG GATATGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTAGCTGCTCA AGAAGCTCTCATCAACAAGAGTATATCGAATTGGTTGAAAAACTCTGCAC TGACCGGTCATACCAATTATTTAGACAAAATTAAAACAGCTATCAACAGA AAGTTTGGTTCCCGCGAAGCACTCAATACTATTATTACAGCTTCACAACA CGGGCAAACTGATTATATACGGAAACTTATCGAACAAGGTGTAGATGTCA ACTCGACAAATAAAGAAGGCAACACACCGCTACATTTCGCTTCAAGATAC GGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAGCTGACTTGGA CAAATTGAATCAAGANATGCCGTTCGGCAAGAAACCAAGAAAATATTCTA TAGAAGGCAAAGATGAAGACCTGATACGGAACGATTTATACGAAGCATGT CGCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGTCAACCAGAAGA TATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGGCCAACAAGGTT TGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAATGTTTGGAG ATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGCTTTGGATT TCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTGCTTGAAAT TGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAAGCGAGGTC CAACATGTAACACCATTACACTATGCTATGCAACAAAACCACAAAGAGtg catcaaaattttgaaaggatcGTCATCCATGGTACAGAATAATGATGAGA TGGCTTGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGATCTCACTA GCTGCTCAAGAAGCTCTCATCAACAAGAGTATATCGAATTGGTTGAAAAA CTCTGCACTGACCGGTCATACCAATTATTTAGACAAAATTAAAACAGCTA TCAACAGAAAGTTTGGTTCCCGCGAAGCACTCAATACTATTATTACAGCT TCACAACACGGGCAAACTGATTATATACGGAAACTTATCGAACAAGGTGT AGATGTCAACTCGACAAATAAAGAAGGCAACACACCGCTACATTTCGCTT CAAGATACGGACACGAAGACACAATAAAGCTTCTCGTTGATTCAGGAGCT GACTTGGACAAATTGAATCAAGANATGCCGTTCGGCAAGAAACCAAGAAA ATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAACGATTTATACG AAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATATTAGGTCAA CCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAGAAAGGCCA ACAAGGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCAAGCGGAAT GTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAGAAGATCGC TTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATATGATGACTG CTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGCGAATGGAA GCGAGGTCCAACATGTAACACCATTACACTATGCTATGCAACAAAACCAC AAAGAGtgcatcaaaattttgaaaggatcGTCATCCATGGTACAGAATAA TGATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAATGTTTCAATGA TCTCACTAGCTGCTCAAGAAGCTCTCATCAACAAGAGTATATCGAATTGG TTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTAGACAAAATTAA AACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACTCAATACTATTA TTACAGCTTCACAACACGGGCAAACTGATTATATACGGAAACTTATCGAA CAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACACACCGCTACA TTTCGCTTCAAGATACGGACACGAAGACACAATAAAGCTTCTCGTTGATT CAGGAGCTGACTTGGACAAATTGAATCAAGANATGCCGTTCGGCAAGAAA CCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATACGGAACGA TTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAATGTGATAT TAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTGAAGATGAG AAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCGTCACAACCA AGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGTAGACATAG AAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGTATGGATAT GATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACAGGTGGAGC GAATGGAAGCGAGGTCCAACATGTAACACCATTACACTATGCTATGCAAC AAAACCACAAAGAGtgcatcaaaattttgaaaggatcGTCATCCATGGTA CAGAATAATGATGAGATGGCTTGGGATATGGCTTCTAAACGAGGAAATGT TTCAATGATCTCACTAGCTGCTCAAGAAGCTCTCATCAACAAGAGTATAT CGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATTATTTAGAC AAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAAGCACTCAA TACTATTATTACAGCTTCACAACACGGGCAAACTGATTATATACGGAAAC TTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAGGCAACACA CCGCTACATTTCGCTTCAAGATACGGACACGAAGACACAATAAAGCTTCT CGTTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGANATGCCGTTCG GCAAGAAACCAAGAAAATATTCTATAGAAGGCAAAGATGAAGACCTGATA CGGAACGATTTATACGAAGCATGTCGCACGGGCAAAACAGAATGGTTGAA TGTGATATTAGGTCAACCAGAAGATATGTTTGATCTCAATGAAATAACTG AAGATGAGAAAGGCCAACAAGGTTTGTCTGCGTCACATTTGGCTGCGCGT CACAACCAAGCGGAATGTTTGGAGATCTTACTTGAACACGGTGCGTATGT AGACATAGAAGATCGCTTTGGATTTCGACCCATTCACGATACAGCGTTGT ATGGATATGATGACTGCTTGAAATTGCTTTTATCTCATGGCGCATCGACA GGTGGAGCGAATGGAAGCGAGGTCCAACATGTAACACCATTACACTATGC TATGCAACAAAACCACAAAGAGtgcatcaaaattttgaaaggatcGTCAT CCATGGTACAGAATAATGATGAGATGGCTTGGGATATGGCTTCTAAACGA GGAAATGTTTCAATGATCTCACTAGCTGCTCAAGAAGCTCTCATCAACAA GAGTATATCGAATTGGTTGAAAAACTCTGCACTGACCGGTCATACCAATT ATTTAGACAAAATTAAAACAGCTATCAACAGAAAGTTTGGTTCCCGCGAA GCACTCAATACTATTATTACAGCTTCACAACACGGGCAAACTGATTATAT ACGGAAACTTATCGAACAAGGTGTAGATGTCAACTCGACAAATAAAGAAG GCAACACACCGCTACATTTCGCTTCAAGATACGGACACGAAGACACAATA AAGCTTCTCGTTGATTCAGGAGCTGACTTGGACAAATTGAATCAAGAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00052794-exon-scaffold_220-1491911889:63455..64270 | TCONS_00052794-exon-scaffold_220-1491911889:63455..64270 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:63455..64270 | TCONS_00052794-exon-scaffold_220-1510915933:63455..64270 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:63455..64270 | TCONS_00052794-exon-scaffold_220-1575043694:63455..64270 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1491911889:64457..64655 | TCONS_00052794-exon-scaffold_220-1491911889:64457..64655 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:64457..64655 | TCONS_00052794-exon-scaffold_220-1510915933:64457..64655 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:64457..64655 | TCONS_00052794-exon-scaffold_220-1575043694:64457..64655 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1491911889:65390..65555 | TCONS_00052794-exon-scaffold_220-1491911889:65390..65555 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:65390..65555 | TCONS_00052794-exon-scaffold_220-1510915933:65390..65555 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:65390..65555 | TCONS_00052794-exon-scaffold_220-1575043694:65390..65555 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1491911889:67487..67699 | TCONS_00052794-exon-scaffold_220-1491911889:67487..67699 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:67487..67699 | TCONS_00052794-exon-scaffold_220-1510915933:67487..67699 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:67487..67699 | TCONS_00052794-exon-scaffold_220-1575043694:67487..67699 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1491911889:67801..67828 | TCONS_00052794-exon-scaffold_220-1491911889:67801..67828 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:67801..67828 | TCONS_00052794-exon-scaffold_220-1510915933:67801..67828 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:67801..67828 | TCONS_00052794-exon-scaffold_220-1575043694:67801..67828 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1491911889:68254..68324 | TCONS_00052794-exon-scaffold_220-1491911889:68254..68324 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1510915933:68254..68324 | TCONS_00052794-exon-scaffold_220-1510915933:68254..68324 | Clytia hemisphaerica | exon |
TCONS_00052794-exon-scaffold_220-1575043694:68254..68324 | TCONS_00052794-exon-scaffold_220-1575043694:68254..68324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_220 | supercontig | scaffold_220:63455..68324 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00052794 vs. Swiss-Prot (Human)
Match: ANK2 (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4) HSP 1 Score: 93.9745 bits (232), Expect = 6.571e-20 Identity = 71/279 (25.45%), Postives = 138/279 (49.46%), Query Frame = 2
Query: 698 NDLYEACRTGKTEWLNVILGQPEDMFDLNEITEDEKGQQGLSASHLAARHNQAECLEILLEHGAYVDIEDRFGFRPIHDTALYGYDDCLKLLLSHGA--STGGANGSEVQHVTPLHYAMQQNHKECIKIL-----KGSSSMVQNNDEMAWDMASKRGNVSMISLAAQ---------EALINKSISNWLKNSALTGHTNYLDKIKTAINR----KFGSREALNTIITASQHGQTDYIRKLIEQGVDVNSTNKEGNTPLHFASRYGHEDTIKLLVDSGADL 1474
N L+ A + G + +LG+ + D ++G +A H+A+ QAE +++L++ GA ++ + + GF P++ A + D +K LL +GA ST +G TPL A+QQ H + + IL KG + A +A+++ + +L Q + ++N++ + + H ++ +NR F +R + + AS+ G T+ ++ L+++G +++ ++G TPLH A+R GH+ ++LL++ GA L
Sbjct: 66 NALHLAAKEGHVGLVQELLGRGSSV--------DSATKKGNTALHIASLAGQAEVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDG-----FTPLAVALQQGHNQAVAILLENDTKGKVRLP------ALHIAARKDDTKSAALLLQNDHNADVQSKMMVNRTTESGFTPLHIAAHYGNVNVATLLLNRGAAVDFTARNGITPLHVASKRGNTNMVKLLLDRGGQIDAKTRDGLTPLHCAARSGHDQVVELLLERGAPL 325 HSP 2 Score: 88.1965 bits (217), Expect = 4.533e-18 Identity = 83/296 (28.04%), Postives = 126/296 (42.57%), Query Frame = 2
Query: 704 LYEACRTGKTEWLNVILGQPEDMFDLNEITEDEKGQQGLSASHLAARHNQAECLEILLEHGAYVDIEDRFGFRPIHDTALYGYDDCLKLLLSH--GASTGGANGSEVQHV----------------------------TPLHYAMQQNHKECIKIL---KGSSSMVQNNDEMAWDMASKRGNVSMISLAAQE-ALINKSISNWLKNSALTGHTNYLDKIKTA-INRKFGSREALNT------IITASQHGQTDYIRKLIEQGVDVNSTNKEGNTPLHFASRYGHEDTIKLLVDSGA 1468
L+ A R GKTE + ++L D G + H++AR Q + +LLE GA + + GF P+H A YG D KLLL A + G NG HV TPLH A ++N + L +++V +AS+ G+ M++L + A I+ S + L + L DK+ A I K G+ + +T +I A +G + L++QG +VN+ K G TPLH A++ GH I +L+ GA
Sbjct: 501 LHIASRLGKTEIVQLLLQHMAH--------PDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSLATKKGFTPLHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHATAKNGYTPLHIAAKKNQMQIASTLLNYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTKSGLTSLHLAAQE---DKVNVADILTKHGADQDAHTKLGYTPLIVACHYGNVKMVNFLLKQGANVNAKTKNGYTPLHQAAQQGHTHIINVLLQHGA 785
The following BLAST results are available for this feature:
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